git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15409 f3b2605a-c512-4ea7-a41b-209d697bcdaa
This commit is contained in:
sjplimp
BIN
doc/Manual.pdf
BIN
doc/Manual.pdf
Binary file not shown.
425
doc/lammps.book
425
doc/lammps.book
@ -14,58 +14,96 @@ accelerate_omp.html
|
||||
accelerate_opt.html
|
||||
Section_howto.html
|
||||
Section_example.html
|
||||
tutorial_drude.html
|
||||
Section_perf.html
|
||||
Section_tools.html
|
||||
Section_modify.html
|
||||
Section_python.html
|
||||
Section_errors.html
|
||||
Section_history.html
|
||||
|
||||
tutorial_drude.html
|
||||
tutorial_github.html
|
||||
|
||||
body.html
|
||||
manifolds.html
|
||||
|
||||
angle_coeff.html
|
||||
angle_style.html
|
||||
atom_modify.html
|
||||
atom_style.html
|
||||
balance.html
|
||||
box.html
|
||||
bond_coeff.html
|
||||
bond_style.html
|
||||
bond_write.html
|
||||
boundary.html
|
||||
box.html
|
||||
change_box.html
|
||||
clear.html
|
||||
comm_style.html
|
||||
comm_modify.html
|
||||
comm_style.html
|
||||
compute.html
|
||||
compute_modify.html
|
||||
create_atoms.html
|
||||
create_bonds.html
|
||||
create_box.html
|
||||
delete_atoms.html
|
||||
delete_bonds.html
|
||||
dielectric.html
|
||||
dihedral_coeff.html
|
||||
dihedral_style.html
|
||||
dimension.html
|
||||
displace_atoms.html
|
||||
dump.html
|
||||
dump_custom_vtk.html
|
||||
dump_h5md.html
|
||||
dump_image.html
|
||||
dump_modify.html
|
||||
dump_molfile.html
|
||||
echo.html
|
||||
fix.html
|
||||
fix_modify.html
|
||||
group.html
|
||||
group2ndx.html
|
||||
if.html
|
||||
improper_coeff.html
|
||||
improper_style.html
|
||||
include.html
|
||||
info.html
|
||||
jump.html
|
||||
kspace_modify.html
|
||||
kspace_style.html
|
||||
label.html
|
||||
lattice.html
|
||||
log.html
|
||||
mass.html
|
||||
minimize.html
|
||||
min_style.html
|
||||
min_modify.html
|
||||
min_style.html
|
||||
minimize.html
|
||||
molecule.html
|
||||
neb.html
|
||||
neighbor.html
|
||||
neigh_modify.html
|
||||
neighbor.html
|
||||
newton.html
|
||||
next.html
|
||||
package.html
|
||||
pair_coeff.html
|
||||
pair_modify.html
|
||||
pair_style.html
|
||||
pair_write.html
|
||||
partition.html
|
||||
prd.html
|
||||
print.html
|
||||
processors.html
|
||||
python.html
|
||||
quit.html
|
||||
read_data.html
|
||||
read_dump.html
|
||||
read_restart.html
|
||||
region.html
|
||||
replicate.html
|
||||
rerun.html
|
||||
reset_timestep.html
|
||||
restart.html
|
||||
run.html
|
||||
run_style.html
|
||||
set.html
|
||||
@ -75,47 +113,32 @@ suffix.html
|
||||
tad.html
|
||||
temper.html
|
||||
thermo.html
|
||||
thermo_style.html
|
||||
thermo_modify.html
|
||||
timestep.html
|
||||
thermo_style.html
|
||||
timer.html
|
||||
timestep.html
|
||||
uncompute.html
|
||||
undump.html
|
||||
unfix.html
|
||||
units.html
|
||||
variable.html
|
||||
velocity.html
|
||||
read_data.html
|
||||
write_data.html
|
||||
write_coeff.html
|
||||
restart.html
|
||||
read_restart.html
|
||||
write_restart.html
|
||||
dump.html
|
||||
undump.html
|
||||
dump_modify.html
|
||||
dump_custom_vtk.html
|
||||
dump_h5md.html
|
||||
dump_image.html
|
||||
dump_molfile.html
|
||||
rerun.html
|
||||
read_dump.html
|
||||
write_data.html
|
||||
write_dump.html
|
||||
atom_style.html
|
||||
body.html
|
||||
atom_modify.html
|
||||
kspace_style.html
|
||||
kspace_modify.html
|
||||
fix.html
|
||||
unfix.html
|
||||
fix_modify.html
|
||||
write_restart.html
|
||||
|
||||
fix_adapt.html
|
||||
fix_adapt_fep.html
|
||||
fix_addforce.html
|
||||
fix_addtorque.html
|
||||
fix_append_atoms.html
|
||||
fix_atc.html
|
||||
fix_atom_swap.html
|
||||
fix_ave_atom.html
|
||||
fix_ave_chunk.html
|
||||
fix_ave_correlate.html
|
||||
fix_ave_correlate_long.html
|
||||
fix_ave_chunk.html
|
||||
fix_ave_histo.html
|
||||
fix_ave_time.html
|
||||
fix_aveforce.html
|
||||
@ -128,14 +151,15 @@ fix_colvars.html
|
||||
fix_deform.html
|
||||
fix_deposit.html
|
||||
fix_drag.html
|
||||
fix_drude_transform.html
|
||||
fix_drude.html
|
||||
fix_eos_cv.html
|
||||
fix_eos_table.html
|
||||
fix_langevin_drude.html
|
||||
fix_drude_transform.html
|
||||
fix_dt_reset.html
|
||||
fix_efield.html
|
||||
fix_ehex.html
|
||||
fix_enforce2d.html
|
||||
fix_eos_cv.html
|
||||
fix_eos_table.html
|
||||
fix_eos_table_rx.html
|
||||
fix_evaporate.html
|
||||
fix_external.html
|
||||
fix_freeze.html
|
||||
@ -145,9 +169,10 @@ fix_gle.html
|
||||
fix_gravity.html
|
||||
fix_heat.html
|
||||
fix_imd.html
|
||||
fix_ipi.html
|
||||
fix_indent.html
|
||||
fix_ipi.html
|
||||
fix_langevin.html
|
||||
fix_langevin_drude.html
|
||||
fix_langevin_eff.html
|
||||
fix_lb_fluid.html
|
||||
fix_lb_momentum.html
|
||||
@ -156,9 +181,6 @@ fix_lb_rigid_pc_sphere.html
|
||||
fix_lb_viscous.html
|
||||
fix_lineforce.html
|
||||
fix_manifoldforce.html
|
||||
fix_nve_manifold_rattle.html
|
||||
fix_nvt_manifold_rattle.html
|
||||
manifolds.html
|
||||
fix_meso.html
|
||||
fix_meso_stationary.html
|
||||
fix_momentum.html
|
||||
@ -175,22 +197,24 @@ fix_npt_asphere.html
|
||||
fix_npt_body.html
|
||||
fix_npt_sphere.html
|
||||
fix_nve.html
|
||||
fix_nve_eff.html
|
||||
fix_nve_asphere.html
|
||||
fix_nve_asphere_noforce.html
|
||||
fix_nve_body.html
|
||||
fix_nve_eff.html
|
||||
fix_nve_limit.html
|
||||
fix_nve_line.html
|
||||
fix_nve_manifold_rattle.html
|
||||
fix_nve_noforce.html
|
||||
fix_nve_sphere.html
|
||||
fix_nve_tri.html
|
||||
fix_nvt_asphere.html
|
||||
fix_nvt_body.html
|
||||
fix_nvt_manifold_rattle.html
|
||||
fix_nvt_sllod.html
|
||||
fix_nvt_sllod_eff.html
|
||||
fix_nvt_sphere.html
|
||||
fix_oneway.html
|
||||
fix_orient_fcc.html
|
||||
fix_orient.html
|
||||
fix_phonon.html
|
||||
fix_pimd.html
|
||||
fix_planeforce.html
|
||||
@ -205,14 +229,15 @@ fix_qeq_comb.html
|
||||
fix_qeq_reax.html
|
||||
fix_qmmm.html
|
||||
fix_qtb.html
|
||||
fix_reaxc_bonds.html
|
||||
fix_reax_bonds.html
|
||||
fix_reaxc_species.html
|
||||
fix_recenter.html
|
||||
fix_restrain.html
|
||||
fix_rigid.html
|
||||
fix_rx.html
|
||||
fix_saed_vtk.html
|
||||
fix_setforce.html
|
||||
fix_shake.html
|
||||
fix_saed_vtk.html
|
||||
fix_shardlow.html
|
||||
fix_smd.html
|
||||
fix_smd_adjust_dt.html
|
||||
@ -223,6 +248,7 @@ fix_smd_setvel.html
|
||||
fix_smd_tlsph_reference_configuration.html
|
||||
fix_smd_wall_surface.html
|
||||
fix_spring.html
|
||||
fix_spring_chunk.html
|
||||
fix_spring_rg.html
|
||||
fix_spring_self.html
|
||||
fix_srd.html
|
||||
@ -237,135 +263,130 @@ fix_thermal_conductivity.html
|
||||
fix_ti_rs.html
|
||||
fix_ti_spring.html
|
||||
fix_tmd.html
|
||||
fix_tune_kspace.html
|
||||
fix_ttm.html
|
||||
fix_tune_kspace.html
|
||||
fix_vector.html
|
||||
fix_viscosity.html
|
||||
fix_viscous.html
|
||||
fix_wall_gran.html
|
||||
fix_wall.html
|
||||
fix_wall_gran.html
|
||||
fix_wall_piston.html
|
||||
fix_wall_reflect.html
|
||||
fix_wall_region.html
|
||||
fix_wall_srd.html
|
||||
compute.html
|
||||
uncompute.html
|
||||
compute_modify.html
|
||||
compute_group_group.html
|
||||
compute_pair.html
|
||||
compute_angle.html
|
||||
compute_bond.html
|
||||
compute_dihedral.html
|
||||
compute_improper.html
|
||||
compute_pair_local.html
|
||||
compute_body_local.html
|
||||
compute_angle_local.html
|
||||
compute_dihedral_local.html
|
||||
compute_improper_local.html
|
||||
compute_property_local.html
|
||||
compute_chunk_atom.html
|
||||
compute_angmom_chunk.html
|
||||
compute_com_chunk.html
|
||||
compute_dipole_chunk.html
|
||||
compute_gyration_chunk.html
|
||||
compute_inertia_chunk.html
|
||||
compute_msd_chunk.html
|
||||
compute_omega_chunk.html
|
||||
compute_property_chunk.html
|
||||
compute_temp_chunk.html
|
||||
compute_torque_chunk.html
|
||||
compute_vcm_chunk.html
|
||||
compute_com.html
|
||||
compute_dpd.html
|
||||
compute_erotate_asphere.html
|
||||
compute_erotate_sphere.html
|
||||
compute_erotate_rigid.html
|
||||
compute_event_displace.html
|
||||
compute_fep.html
|
||||
compute_gyration.html
|
||||
compute_heat_flux.html
|
||||
compute_ke.html
|
||||
compute_msd.html
|
||||
compute_pe.html
|
||||
compute_msd_nongauss.html
|
||||
compute_pressure.html
|
||||
compute_rdf.html
|
||||
compute_reduce.html
|
||||
compute_slice.html
|
||||
compute_saed.html
|
||||
compute_property_atom.html
|
||||
|
||||
compute_ackland_atom.html
|
||||
compute_angle.html
|
||||
compute_angle_local.html
|
||||
compute_angmom_chunk.html
|
||||
compute_basal_atom.html
|
||||
compute_body_local.html
|
||||
compute_bond.html
|
||||
compute_bond_local.html
|
||||
compute_centro_atom.html
|
||||
compute_chunk_atom.html
|
||||
compute_cluster_atom.html
|
||||
compute_cna_atom.html
|
||||
compute_com.html
|
||||
compute_com_chunk.html
|
||||
compute_contact_atom.html
|
||||
compute_coord_atom.html
|
||||
compute_damage_atom.html
|
||||
compute_dihedral.html
|
||||
compute_dihedral_local.html
|
||||
compute_dilatation_atom.html
|
||||
compute_dipole_chunk.html
|
||||
compute_displace_atom.html
|
||||
compute_dpd.html
|
||||
compute_dpd_atom.html
|
||||
compute_erotate_asphere.html
|
||||
compute_erotate_rigid.html
|
||||
compute_erotate_sphere.html
|
||||
compute_erotate_sphere_atom.html
|
||||
compute_event_displace.html
|
||||
compute_fep.html
|
||||
compute_group_group.html
|
||||
compute_gyration.html
|
||||
compute_gyration_chunk.html
|
||||
compute_heat_flux.html
|
||||
compute_hexorder_atom.html
|
||||
compute_improper.html
|
||||
compute_improper_local.html
|
||||
compute_inertia_chunk.html
|
||||
compute_ke.html
|
||||
compute_ke_atom.html
|
||||
compute_ke_eff.html
|
||||
compute_ke_atom_eff.html
|
||||
compute_ke_eff.html
|
||||
compute_ke_rigid.html
|
||||
compute_meso_e_atom.html
|
||||
compute_meso_rho_atom.html
|
||||
compute_meso_t_atom.html
|
||||
compute_msd.html
|
||||
compute_msd_chunk.html
|
||||
compute_msd_nongauss.html
|
||||
compute_omega_chunk.html
|
||||
compute_orientorder_atom.html
|
||||
compute_pair.html
|
||||
compute_pair_local.html
|
||||
compute_pe.html
|
||||
compute_pe_atom.html
|
||||
compute_plasticity_atom.html
|
||||
compute_sna_atom.html
|
||||
compute_stress_atom.html
|
||||
compute_voronoi_atom.html
|
||||
compute_xrd.html
|
||||
compute_pressure.html
|
||||
compute_property_atom.html
|
||||
compute_property_chunk.html
|
||||
compute_property_local.html
|
||||
compute_rdf.html
|
||||
compute_reduce.html
|
||||
compute_rigid_local.html
|
||||
compute_saed.html
|
||||
compute_slice.html
|
||||
compute_smd_contact_radius.html
|
||||
compute_smd_damage.html
|
||||
compute_smd_hourglass_error.html
|
||||
compute_smd_internal_energy.html
|
||||
compute_smd_plastic_strain_rate.html
|
||||
compute_smd_plastic_strain.html
|
||||
compute_smd_plastic_strain_rate.html
|
||||
compute_smd_rho.html
|
||||
compute_smd_tlsph_defgrad.html
|
||||
compute_smd_tlsph_dt.html
|
||||
compute_smd_tlsph_num_neighs.html
|
||||
compute_smd_tlsph_shape.html
|
||||
compute_smd_tlsph_strain_rate.html
|
||||
compute_smd_tlsph_strain.html
|
||||
compute_smd_tlsph_strain_rate.html
|
||||
compute_smd_tlsph_stress.html
|
||||
compute_smd_triangle_mesh_vertices.html
|
||||
compute_smd_ulsph_num_neighs.html
|
||||
compute_smd_ulsph_strain_rate.html
|
||||
compute_smd_ulsph_strain.html
|
||||
compute_smd_ulsph_strain_rate.html
|
||||
compute_smd_ulsph_stress.html
|
||||
compute_smd_vol.html
|
||||
compute_sna_atom.html
|
||||
compute_stress_atom.html
|
||||
compute_tally.html
|
||||
compute_temp.html
|
||||
compute_temp_asphere.html
|
||||
compute_temp_body.html
|
||||
compute_temp_chunk.html
|
||||
compute_temp_com.html
|
||||
compute_temp_cs.html
|
||||
compute_temp_deform.html
|
||||
compute_temp_deform_eff.html
|
||||
compute_temp_drude.html
|
||||
compute_temp_eff.html
|
||||
compute_temp_partial.html
|
||||
compute_temp_profile.html
|
||||
compute_temp_ramp.html
|
||||
compute_temp_region.html
|
||||
compute_temp_region_eff.html
|
||||
compute_temp_rotate.html
|
||||
compute_temp_sphere.html
|
||||
compute_temp_eff.html
|
||||
compute_temp_deform_eff.html
|
||||
compute_temp_region_eff.html
|
||||
compute_ti.html
|
||||
compute_torque_chunk.html
|
||||
compute_vacf.html
|
||||
pair_style.html
|
||||
pair_modify.html
|
||||
pair_write.html
|
||||
pair_none.html
|
||||
pair_zero.html
|
||||
compute_vcm_chunk.html
|
||||
compute_voronoi_atom.html
|
||||
compute_xrd.html
|
||||
|
||||
pair_adp.html
|
||||
pair_airebo.html
|
||||
pair_awpmd.html
|
||||
@ -378,7 +399,6 @@ pair_buck.html
|
||||
pair_buck_long.html
|
||||
pair_charmm.html
|
||||
pair_class2.html
|
||||
pair_coeff.html
|
||||
pair_colloid.html
|
||||
pair_comb.html
|
||||
pair_coul.html
|
||||
@ -392,6 +412,7 @@ pair_eam.html
|
||||
pair_edip.html
|
||||
pair_eff.html
|
||||
pair_eim.html
|
||||
pair_exp6_rx.html
|
||||
pair_gauss.html
|
||||
pair_gayberne.html
|
||||
pair_gran.html
|
||||
@ -400,9 +421,9 @@ pair_hbond_dreiding.html
|
||||
pair_hybrid.html
|
||||
pair_kim.html
|
||||
pair_lcbop.html
|
||||
pair_line_lj.html
|
||||
pair_list.html
|
||||
pair_lj.html
|
||||
pair_line_lj.html
|
||||
pair_lj96.html
|
||||
pair_lj_cubic.html
|
||||
pair_lj_expand.html
|
||||
@ -413,7 +434,6 @@ pair_lj_smooth_linear.html
|
||||
pair_lj_soft.html
|
||||
pair_lubricate.html
|
||||
pair_lubricateU.html
|
||||
pair_nb3b_harmonic.html
|
||||
pair_mdf.html
|
||||
pair_meam.html
|
||||
pair_meam_spline.html
|
||||
@ -422,20 +442,24 @@ pair_mgpt.html
|
||||
pair_mie.html
|
||||
pair_morse.html
|
||||
pair_multi_lucy.html
|
||||
pair_multi_lucy_rx.html
|
||||
pair_nb3b_harmonic.html
|
||||
pair_nm.html
|
||||
pair_none.html
|
||||
pair_peri.html
|
||||
pair_polymorphic.html
|
||||
pair_quip.html
|
||||
pair_reax.html
|
||||
pair_reax_c.html
|
||||
pair_resquared.html
|
||||
pair_sdk.html
|
||||
pair_snap.html
|
||||
pair_soft.html
|
||||
pair_smd_hertz.html
|
||||
pair_smd_tlsph.html
|
||||
pair_smd_triangulated_surface.html
|
||||
pair_smd_ulsph.html
|
||||
pair_smtbq.html
|
||||
pair_snap.html
|
||||
pair_soft.html
|
||||
pair_sph_heatconduction.html
|
||||
pair_sph_idealgas.html
|
||||
pair_sph_lj.html
|
||||
@ -445,6 +469,7 @@ pair_sph_taitwater_morris.html
|
||||
pair_srp.html
|
||||
pair_sw.html
|
||||
pair_table.html
|
||||
pair_table_rx.html
|
||||
pair_tersoff.html
|
||||
pair_tersoff_mod.html
|
||||
pair_tersoff_zbl.html
|
||||
@ -454,28 +479,24 @@ pair_vashishta.html
|
||||
pair_yukawa.html
|
||||
pair_yukawa_colloid.html
|
||||
pair_zbl.html
|
||||
bond_style.html
|
||||
bond_write.html
|
||||
bond_none.html
|
||||
bond_zero.html
|
||||
pair_zero.html
|
||||
|
||||
bond_class2.html
|
||||
bond_coeff.html
|
||||
bond_fene_expand.html
|
||||
bond_fene.html
|
||||
bond_fene_expand.html
|
||||
bond_harmonic.html
|
||||
bond_harmonic_shift.html
|
||||
bond_harmonic_shift_cut.html
|
||||
bond_hybrid.html
|
||||
bond_morse.html
|
||||
bond_none.html
|
||||
bond_nonlinear.html
|
||||
bond_quartic.html
|
||||
bond_table.html
|
||||
angle_style.html
|
||||
angle_none.html
|
||||
angle_zero.html
|
||||
bond_zero.html
|
||||
|
||||
angle_charmm.html
|
||||
angle_class2.html
|
||||
angle_coeff.html
|
||||
angle_cosine.html
|
||||
angle_cosine_delta.html
|
||||
angle_cosine_periodic.html
|
||||
@ -487,15 +508,14 @@ angle_fourier.html
|
||||
angle_fourier_simple.html
|
||||
angle_harmonic.html
|
||||
angle_hybrid.html
|
||||
angle_none.html
|
||||
angle_quartic.html
|
||||
angle_sdk.html
|
||||
angle_table.html
|
||||
dihedral_style.html
|
||||
dihedral_none.html
|
||||
dihedral_zero.html
|
||||
angle_zero.html
|
||||
|
||||
dihedral_charmm.html
|
||||
dihedral_class2.html
|
||||
dihedral_coeff.html
|
||||
dihedral_cosine_shift_exp.html
|
||||
dihedral_fourier.html
|
||||
dihedral_harmonic.html
|
||||
@ -503,101 +523,102 @@ dihedral_helix.html
|
||||
dihedral_hybrid.html
|
||||
dihedral_multi_harmonic.html
|
||||
dihedral_nharmonic.html
|
||||
dihedral_none.html
|
||||
dihedral_opls.html
|
||||
dihedral_quadratic.html
|
||||
dihedral_spherical.html
|
||||
dihedral_table.html
|
||||
improper_style.html
|
||||
improper_none.html
|
||||
improper_zero.html
|
||||
dihedral_zero.html
|
||||
|
||||
improper_class2.html
|
||||
improper_coeff.html
|
||||
improper_cossq.html
|
||||
improper_cvff.html
|
||||
improper_distance.html
|
||||
improper_fourier.html
|
||||
improper_harmonic.html
|
||||
improper_hybrid.html
|
||||
improper_none.html
|
||||
improper_ring.html
|
||||
improper_umbrella.html
|
||||
improper_zero.html
|
||||
|
||||
fix_atc.html
|
||||
USER/atc/man_poisson_solver.html
|
||||
USER/atc/man_atom_element_map.html
|
||||
USER/atc/man_pair_interactions.html
|
||||
USER/atc/man_output_nodeset.html
|
||||
USER/atc/man_mesh_write.html
|
||||
USER/atc/man_set.html
|
||||
USER/atc/man_localized_lambda.html
|
||||
USER/atc/man_mesh_delete_elements.html
|
||||
USER/atc/man_internal_atom_integrate.html
|
||||
USER/atc/man_mesh_create_faceset_plane.html
|
||||
USER/atc/man_boundary_faceset.html
|
||||
USER/atc/man_control.html
|
||||
USER/atc/man_control_thermal.html
|
||||
USER/atc/man_source.html
|
||||
USER/atc/man_material.html
|
||||
USER/atc/man_write_restart.html
|
||||
USER/atc/man_add_molecule.html
|
||||
USER/atc/man_add_species.html
|
||||
USER/atc/man_atom_element_map.html
|
||||
USER/atc/man_atom_weight.html
|
||||
USER/atc/man_atomic_charge.html
|
||||
USER/atc/man_boundary.html
|
||||
USER/atc/man_boundary_dynamics.html
|
||||
USER/atc/man_boundary_faceset.html
|
||||
USER/atc/man_boundary_integral.html
|
||||
USER/atc/man_consistent_fe_initialization.html
|
||||
USER/atc/man_contour_integral.html
|
||||
USER/atc/man_control.html
|
||||
USER/atc/man_control_momentum.html
|
||||
USER/atc/man_control_thermal.html
|
||||
USER/atc/man_control_thermal_correction_max_iterations.html
|
||||
USER/atc/man_decomposition.html
|
||||
USER/atc/man_electron_integration.html
|
||||
USER/atc/man_equilibrium_start.html
|
||||
USER/atc/man_extrinsic_exchange.html
|
||||
USER/atc/man_fe_md_boundary.html
|
||||
USER/atc/man_fem_mesh.html
|
||||
USER/atc/man_filter_scale.html
|
||||
USER/atc/man_filter_type.html
|
||||
USER/atc/man_fix_atc.html
|
||||
USER/atc/man_fix_flux.html
|
||||
USER/atc/man_fix_nodes.html
|
||||
USER/atc/man_track_displacement.html
|
||||
USER/atc/man_unfix_flux.html
|
||||
USER/atc/man_mesh_output.html
|
||||
USER/atc/man_hardy_on_the_fly.html
|
||||
USER/atc/man_contour_integral.html
|
||||
USER/atc/man_fem_mesh.html
|
||||
USER/atc/man_electron_integration.html
|
||||
USER/atc/man_remove_source.html
|
||||
USER/atc/man_time_filter.html
|
||||
USER/atc/man_write_atom_weights.html
|
||||
USER/atc/man_mesh_read.html
|
||||
USER/atc/man_extrinsic_exchange.html
|
||||
USER/atc/man_mesh_create_nodeset.html
|
||||
USER/atc/man_source_integration.html
|
||||
USER/atc/man_kernel_function.html
|
||||
USER/atc/man_lumped_lambda_solve.html
|
||||
USER/atc/man_reset_atomic_reference_positions.html
|
||||
USER/atc/man_boundary_dynamics.html
|
||||
USER/atc/man_mesh_nodeset_to_elementset.html
|
||||
USER/atc/man_mass_matrix.html
|
||||
USER/atc/man_atom_weight.html
|
||||
USER/atc/man_hardy_computes.html
|
||||
USER/atc/man_hardy_fields.html
|
||||
USER/atc/man_hardy_gradients.html
|
||||
USER/atc/man_hardy_kernel.html
|
||||
USER/atc/man_boundary_integral.html
|
||||
USER/atc/man_output.html
|
||||
USER/atc/man_atomic_charge.html
|
||||
USER/atc/man_read_restart.html
|
||||
USER/atc/man_remove_species.html
|
||||
USER/atc/man_control_momentum.html
|
||||
USER/atc/man_filter_scale.html
|
||||
USER/atc/man_sample_frequency.html
|
||||
USER/atc/man_internal_quadrature.html
|
||||
USER/atc/man_fe_md_boundary.html
|
||||
USER/atc/man_add_species.html
|
||||
USER/atc/man_mesh_quadrature.html
|
||||
USER/atc/man_momentum_time_integration.html
|
||||
USER/atc/man_thermal_time_integration.html
|
||||
USER/atc/man_mesh_add_to_nodeset.html
|
||||
USER/atc/man_internal_element_set.html
|
||||
USER/atc/man_mesh_create_elementset.html
|
||||
USER/atc/man_fix_atc.html
|
||||
USER/atc/man_initial.html
|
||||
USER/atc/man_equilibrium_start.html
|
||||
USER/atc/man_unfix_nodes.html
|
||||
USER/atc/man_reset_time.html
|
||||
USER/atc/man_consistent_fe_initialization.html
|
||||
USER/atc/man_mask_direction.html
|
||||
USER/atc/man_mesh_create.html
|
||||
USER/atc/man_temperature_definition.html
|
||||
USER/atc/man_hardy_fields.html
|
||||
USER/atc/man_hardy_on_the_fly.html
|
||||
USER/atc/man_hardy_rates.html
|
||||
USER/atc/man_output_elementset.html
|
||||
USER/atc/man_boundary.html
|
||||
USER/atc/man_filter_type.html
|
||||
USER/atc/man_hardy_computes.html
|
||||
USER/atc/man_remove_molecule.html
|
||||
USER/atc/man_initial.html
|
||||
USER/atc/man_internal_atom_integrate.html
|
||||
USER/atc/man_internal_element_set.html
|
||||
USER/atc/man_internal_quadrature.html
|
||||
USER/atc/man_kernel_function.html
|
||||
USER/atc/man_localized_lambda.html
|
||||
USER/atc/man_lumped_lambda_solve.html
|
||||
USER/atc/man_mask_direction.html
|
||||
USER/atc/man_mass_matrix.html
|
||||
USER/atc/man_material.html
|
||||
USER/atc/man_mesh_add_to_nodeset.html
|
||||
USER/atc/man_mesh_create.html
|
||||
USER/atc/man_mesh_create_elementset.html
|
||||
USER/atc/man_mesh_create_faceset_box.html
|
||||
USER/atc/man_decomposition.html
|
||||
tutorial_github.html
|
||||
USER/atc/man_mesh_create_faceset_plane.html
|
||||
USER/atc/man_mesh_create_nodeset.html
|
||||
USER/atc/man_mesh_delete_elements.html
|
||||
USER/atc/man_mesh_nodeset_to_elementset.html
|
||||
USER/atc/man_mesh_output.html
|
||||
USER/atc/man_mesh_quadrature.html
|
||||
USER/atc/man_mesh_read.html
|
||||
USER/atc/man_mesh_write.html
|
||||
USER/atc/man_momentum_time_integration.html
|
||||
USER/atc/man_output.html
|
||||
USER/atc/man_output_elementset.html
|
||||
USER/atc/man_output_nodeset.html
|
||||
USER/atc/man_pair_interactions.html
|
||||
USER/atc/man_poisson_solver.html
|
||||
USER/atc/man_read_restart.html
|
||||
USER/atc/man_remove_molecule.html
|
||||
USER/atc/man_remove_source.html
|
||||
USER/atc/man_remove_species.html
|
||||
USER/atc/man_reset_atomic_reference_positions.html
|
||||
USER/atc/man_reset_time.html
|
||||
USER/atc/man_sample_frequency.html
|
||||
USER/atc/man_set.html
|
||||
USER/atc/man_source.html
|
||||
USER/atc/man_source_integration.html
|
||||
USER/atc/man_temperature_definition.html
|
||||
USER/atc/man_thermal_time_integration.html
|
||||
USER/atc/man_time_filter.html
|
||||
USER/atc/man_track_displacement.html
|
||||
USER/atc/man_unfix_flux.html
|
||||
USER/atc/man_unfix_nodes.html
|
||||
USER/atc/man_write_atom_weights.html
|
||||
USER/atc/man_write_restart.html
|
||||
|
||||
|
||||
|
||||
@ -6,11 +6,20 @@
|
||||
|
||||
:line
|
||||
|
||||
[Description:]
|
||||
Manifolds (surfacse) :h3
|
||||
|
||||
Below is a list of currently supported manifolds, their parameters and a short description of them.
|
||||
The parameters listed here are in the same order as they should be passed to the relevant fixes.
|
||||
[Overview:]
|
||||
|
||||
This doc page is not about a LAMMPS input script command, but about
|
||||
manifolds, which are generalized surfaces, as defined and used by the
|
||||
USER-MANIFOLD package, to track particle motion on the manifolds. See
|
||||
the src/USER-MANIFOLD/README file for more details about the package
|
||||
and its commands.
|
||||
|
||||
Below is a list of currently supported manifolds by the USER-MANIFOLD
|
||||
package, their parameters and a short description of them. The
|
||||
parameters listed here are in the same order as they should be passed
|
||||
to the relevant fixes.
|
||||
|
||||
{manifold} || {parameters} || {equation} || {description}
|
||||
cylinder || R || x^2 + y^2 - R^2 = 0 || Cylinder along z-axis, axis going through (0,0,0)
|
||||
|
||||
@ -207,8 +207,6 @@ pair style be defined.
|
||||
|
||||
:line
|
||||
|
||||
Use of {special} keyword :h5
|
||||
|
||||
The {special} keyword allows to override the 1-2, 1-3, and 1-4
|
||||
exclusion settings for individual sub-styles of a
|
||||
"hybrid pair style"_pair_hybrid.html. It requires 4 arguments similar
|
||||
|
||||
@ -6,19 +6,19 @@
|
||||
|
||||
:line
|
||||
|
||||
LAMMPS GitHub tutorial :h2
|
||||
written by Stefan Paquay :h3
|
||||
LAMMPS GitHub tutorial :h3
|
||||
[written by Stefan Paquay]
|
||||
|
||||
:line
|
||||
|
||||
This document briefly describes how to use GitHub to merge changes
|
||||
into LAMMPS using GitHub. It assumes that you are familiar with
|
||||
This document briefly describes how to use GitHub to merge changes you
|
||||
make into LAMMPS, using GitHub. It assumes that you are familiar with
|
||||
git. You may want to have a look at the "Git
|
||||
book"_http://git-scm.com/book/ to reacquaint yourself.
|
||||
|
||||
:line
|
||||
|
||||
Making an account :h2
|
||||
[Making an account]
|
||||
|
||||
First of all, you need a GitHub account. This is fairly simple, just
|
||||
go to "GitHub"_https://github.com and create an account by clicking
|
||||
@ -28,7 +28,7 @@ username or e-mail address and password.
|
||||
|
||||
:line
|
||||
|
||||
Forking the repository :h2
|
||||
[Forking the repository]
|
||||
|
||||
To get changes into LAMMPS, you need to first fork the repository. At
|
||||
the time of writing, LAMMPS-ICMS is the preferred fork. Go to "LAMMPS
|
||||
@ -49,12 +49,12 @@ can include changes from upstream into your repository.
|
||||
|
||||
:line
|
||||
|
||||
Adding changes to your own fork :h2
|
||||
[Adding changes to your own fork]
|
||||
|
||||
Before adding changes, it is better to first create a new branch that
|
||||
will contain these changes, a so-called feature branch.
|
||||
|
||||
Feature branches :h3
|
||||
[Feature branches]
|
||||
|
||||
Since LAMMPS is such a big project and most user contributions come in
|
||||
small portions, the most ideal workflow for LAMMPS is the so-called
|
||||
@ -111,7 +111,7 @@ After the files are added, the change should be comitted:
|
||||
The "-m" switch is used to add a message to the commit. Use this to
|
||||
indicate what type of change was commited.
|
||||
|
||||
Wisdom by Axel: :h4
|
||||
[Wisdom by Axel]
|
||||
|
||||
{"Do not use "git commit -a". the -a flag will automatically include
|
||||
*all* modified or new files. mercurial does that and it find it
|
||||
@ -176,7 +176,7 @@ request.
|
||||
|
||||
:line
|
||||
|
||||
Additional changes :h2
|
||||
[Additional changes]
|
||||
|
||||
Before the pull request is accepted, any additional changes you push
|
||||
into your repository will automatically become part of the pull
|
||||
@ -184,7 +184,7 @@ request.
|
||||
|
||||
:line
|
||||
|
||||
After a merge :h2
|
||||
[After a merge]
|
||||
|
||||
When everything is fine the feature branch is merged into the LAMMPS
|
||||
repositories:
|
||||
|
||||
Reference in New Issue
Block a user