more debugging and features

src/dump.cpp

@@ -330,6 +330,8 @@ void Dump::write()
 
   if (delay_flag && update->ntimestep < delaystep) return;
 
+  printf("DUMP %ld\n",update->ntimestep);
+
   // if file per timestep, open new file
 
   if (multifile) openfile();

src/fix_dt_reset.cpp

@@ -198,6 +198,7 @@ void FixDtReset::end_of_step()
   laststep = update->ntimestep;
 
   // calls to other classes that need to know timestep size changed
+  // similar logic is in Input::timestep()
 
   update->update_time();
   update->dt = dt;

src/input.cpp

@@ -1836,8 +1836,24 @@ void Input::timer_command()
 void Input::timestep()
 {
   if (narg != 1) error->all(FLERR,"Illegal timestep command");
+
+  update->update_time();
   update->dt = utils::numeric(FLERR,arg[0],false,lmp);
   update->dt_default = 0;
+
+  if (update->first_update == 0) return;
+
+  // calls to other classes that need to know timestep size changed
+  // similar logic is in FixDtReset::end_of_step()
+  // only if a run has already occurred
+
+  int respaflag = 0;
+  if (utils::strmatch(update->integrate_style, "^respa")) respaflag = 1;
+  if (respaflag) update->integrate->reset_dt();
+
+  if (force->pair) force->pair->reset_dt();
+  for (int i = 0; i < modify->nfix; i++) modify->fix[i]->reset_dt();
+  output->reset_dt();
 }
 
 /* ---------------------------------------------------------------------- */

src/output.cpp

@@ -565,42 +565,22 @@ void Output::write_restart(bigint ntimestep)
 
 /* ----------------------------------------------------------------------
    timestep is being changed, called by update->reset_timestep()
-   reset next output values for dumps, restart, thermo output
+   for dumps, require that no dump is "active"
+     meaning that a snapshot has already been output
+   reset next output values restart and thermo output
    reset to smallest value >= new timestep
    if next timestep set by variable evaluation,
      eval for ntimestep-1, so current ntimestep can be returned if needed
      no guarantee that variable can be evaluated for ntimestep-1
-       if it depends on computes, but live with that rare case for now
+     e.g. if it depends on computes, but live with that rare case for now
 ------------------------------------------------------------------------- */
 
 void Output::reset_timestep(bigint ntimestep)
 {
   next_dump_any = MAXBIGINT;
-  for (int idump = 0; idump < ndump; idump++) {
+  for (int idump = 0; idump < ndump; idump++)
-    if (every_dump[idump]) {
+    if (last_dump[idump] >= 0)
-      next_dump[idump] = (ntimestep/every_dump[idump])*every_dump[idump];
+      error->all("Cannot reset timestep with active dump - must undump first");
-      if (next_dump[idump] < ntimestep) next_dump[idump] += every_dump[idump];
-    } else {
-      // ivar_dump may not be initialized
-      if (ivar_dump[idump] < 0) {
-        ivar_dump[idump] = input->variable->find(var_dump[idump]);
-        if (ivar_dump[idump] < 0)
-          error->all(FLERR,"Variable name for dump every does not exist");
-        if (!input->variable->equalstyle(ivar_dump[idump]))
-          error->all(FLERR,"Variable for dump every is invalid style");
-      }
-      modify->clearstep_compute();
-      update->ntimestep--;
-      bigint nextdump = static_cast<bigint>
-        (input->variable->compute_equal(ivar_dump[idump]));
-      if (nextdump < ntimestep)
-        error->all(FLERR,"Dump every variable returned a bad timestep");
-      update->ntimestep++;
-      next_dump[idump] = nextdump;
-      modify->addstep_compute(next_dump[idump]);
-    }
-    next_dump_any = MIN(next_dump_any,next_dump[idump]);
-  }
 
   if (restart_flag_single) {
     if (restart_every_single) {
@@ -669,21 +649,30 @@ void Output::reset_timestep(bigint ntimestep)
 
 void Output::reset_dt()
 {
-  next_dump_any = MAXBIGINT;
-
   bigint ntimestep = update->ntimestep;
 
+  next_dump_any = MAXBIGINT;
+
   for (int idump = 0; idump < ndump; idump++) {
     if (mode_dump[idump] == 1) {
 
-      // reset next_dump for unchanged next_time_dump, 2 arg for reset_dt()
+      // reset next_dump but do not change next_time_dump, 2 arg for reset_dt()
       // do not invoke for a dump already scheduled for this step
       // use compute_all() b/c don't know what computes will be needed
 
       if (next_dump[idump] != ntimestep) {
         calculate_next_dump(2,idump,update->ntimestep);
-        if (dump[idump]->clearstep || var_dump[idump])
+
-          modify->addstep_compute_all(next_dump[idump]);
+        // NOTE: think I should not do this here
+        // for time dumps, calc_next_dump should calc the next timestep
+        //   as one less and not add it to computes
+        // then on that step, write() should not actually write the dump
+        //   but trigger it on next step and addstep_compute_all for that step
+        // b/c when write() is called, the next-step timestep is set
+        // unless run every timestep is invoked in-between!
+
+        //if (dump[idump]->clearstep || var_dump[idump])
+        //  modify->addstep_compute_all(next_dump[idump]);
       }
     }
 

src/update.cpp

@@ -491,6 +491,7 @@ void Update::reset_timestep(bigint newstep)
   }
 
   // changes to output that depend on timestep
+  // no active dumps allowed
 
   output->reset_timestep(ntimestep);
 

src/verlet.cpp

@@ -252,6 +252,8 @@ void Verlet::run(int n)
     ntimestep = ++update->ntimestep;
     ev_set(ntimestep);
 
+    printf("VERLET %ld: %d %d\n",ntimestep,eflag,vflag);
+
     // initial time integration
 
     timer->stamp();