fixing broken doc references

doc/src/Commands_fix.rst

@@ -91,6 +91,7 @@ OPT.
    * :doc:`grem <fix_grem>`
    * :doc:`halt <fix_halt>`
    * :doc:`heat <fix_heat>`
+   * :doc:`heat/flow/sphere/temp <fix_heat_flow_sphere_temp>`
    * :doc:`hyper/global <fix_hyper_global>`
    * :doc:`hyper/local <fix_hyper_local>`
    * :doc:`imd <fix_imd>`
@@ -235,7 +236,6 @@ OPT.
    * :doc:`temp/berendsen <fix_temp_berendsen>`
    * :doc:`temp/csld <fix_temp_csvr>`
    * :doc:`temp/csvr <fix_temp_csvr>`
-   * :doc:`temp/integrate <fix_temp_integrate>`
    * :doc:`temp/rescale <fix_temp_rescale>`
    * :doc:`temp/rescale/eff <fix_temp_rescale_eff>`
    * :doc:`tfmc <fix_tfmc>`

doc/src/Howto_granular.rst

@@ -46,7 +46,7 @@ atoms, and should be used for granular system instead of the fix style
 To model heat conduction, one must use the atom style:
 * :doc:`atom_style sphere/temp <atom_style>`
 a temperature integration fix
-* :doc:`fix temp/integrate <fix_temp_integrate>`
+* :doc:`fix heat/flow/sphere/temp <fix_heat_flow_sphere_temp>`
 and a heat conduction option defined in both
 * :doc:`pair_style granular <pair_granular>`
 * :doc:`fix wall/gran <fix_wall_gran>`
@@ -65,4 +65,4 @@ computations between frozen atoms by using this command:
    doc page, where 2d simulations are discussed.
 
 To add custom granular contact models, see the
-:doc:`modifying granular submodels page <Modify_gsm>`.
+:doc:`modifying granular sub-models page <Modify_gran_sub_mod>`.

doc/src/fix.rst

@@ -238,6 +238,7 @@ accelerated styles exist.
 * :doc:`grem <fix_grem>` - implements the generalized replica exchange method
 * :doc:`halt <fix_halt>` - terminate a dynamics run or minimization
 * :doc:`heat <fix_heat>` - add/subtract momentum-conserving heat
+* :doc:`heat/flow/sphere/temp <fix_heat_flow_sphere_temp>` - plain time integration of heat flow with per-atom temperature updates
 * :doc:`hyper/global <fix_hyper_global>` - global hyperdynamics
 * :doc:`hyper/local <fix_hyper_local>` - local hyperdynamics
 * :doc:`imd <fix_imd>` - implements the "Interactive MD" (IMD) protocol
@@ -382,7 +383,6 @@ accelerated styles exist.
 * :doc:`temp/berendsen <fix_temp_berendsen>` - temperature control by Berendsen thermostat
 * :doc:`temp/csld <fix_temp_csvr>` - canonical sampling thermostat with Langevin dynamics
 * :doc:`temp/csvr <fix_temp_csvr>` - canonical sampling thermostat with Hamiltonian dynamics
-* :doc:`temp/integrate <fix_temp_integrate>` - plain time integration with per-atom temperature updates
 * :doc:`temp/rescale <fix_temp_rescale>` - temperature control by velocity rescaling
 * :doc:`temp/rescale/eff <fix_temp_rescale_eff>` - temperature control by velocity rescaling in the electron force field model
 * :doc:`tfmc <fix_tfmc>` - perform force-bias Monte Carlo with time-stamped method

doc/src/pair_granular.rst

@@ -659,8 +659,9 @@ where :math:`\Delta T` is the difference in the two particles' temperature,
 :math:`a` is the area of the contact and depends on the normal force model.
 
 Note that the option *none* must either be used in all or none of of the
-*pair_coeff* calls. See :doc:`fix temp/integrate <fix_temp_integrate>` for
+*pair_coeff* calls. See
-more information on this option.
+:doc:`fix heat/flow/sphere/temp <fix_heat_flow_sphere_temp>` for more
+information on this option.
 
 ----------
 

src/GRANULAR/granular_model.cpp

@@ -409,7 +409,6 @@ void GranularModel::calculate_forces()
   vrel = len3(vtr);
 
   // calculate forces/torques
-  forces[0] = 0.0;
   double Fdamp, dist_to_contact;
   if (area_flag)
     area = normal_model->calculate_area();