diff --git a/unittest/formats/CMakeLists.txt b/unittest/formats/CMakeLists.txt index 039913ce71..cacbfb83af 100644 --- a/unittest/formats/CMakeLists.txt +++ b/unittest/formats/CMakeLists.txt @@ -44,6 +44,12 @@ if (PKG_COMPRESS) set_tests_properties(DumpCustomGZ PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR}") set_tests_properties(DumpCustomGZ PROPERTIES ENVIRONMENT "GZIP_BINARY=${GZIP_BINARY}") + add_executable(test_dump_cfg_gz test_dump_cfg_gz.cpp) + target_link_libraries(test_dump_cfg_gz PRIVATE lammps GTest::GMock GTest::GTest) + add_test(NAME DumpCfgGZ COMMAND test_dump_cfg_gz WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}) + set_tests_properties(DumpCfgGZ PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR}") + set_tests_properties(DumpCfgGZ PROPERTIES ENVIRONMENT "GZIP_BINARY=${GZIP_BINARY}") + find_program(ZSTD_BINARY NAMES zstd) if (ZSTD_BINARY) diff --git a/unittest/formats/test_dump_cfg.cpp b/unittest/formats/test_dump_cfg.cpp index 2bf6be259d..8096bf1913 100644 --- a/unittest/formats/test_dump_cfg.cpp +++ b/unittest/formats/test_dump_cfg.cpp @@ -46,7 +46,7 @@ TEST_F(DumpCfgTest, invalid_options) TEST_F(DumpCfgTest, require_multifile) { - auto dump_file = "dump_melt_run.cfg"; + auto dump_file = "dump.melt.cfg_run.cfg"; auto fields = "mass type xs ys zs id proc procp1 x y z ix iy iz xu yu zu xsu ysu zsu vx vy vz fx fy fz"; if (!verbose) ::testing::internal::CaptureStdout(); @@ -60,58 +60,58 @@ TEST_F(DumpCfgTest, require_multifile) TEST_F(DumpCfgTest, run0) { - auto dump_file = "dump_cfg_run*.melt"; + auto dump_file = "dump_cfg_run*.melt.cfg"; auto fields = "mass type xs ys zs id proc procp1 x y z ix iy iz vx vy vz fx fy fz"; generate_dump(dump_file, fields, "", 0); - ASSERT_FILE_EXISTS("dump_cfg_run0.melt"); - auto lines = read_lines("dump_cfg_run0.melt"); + ASSERT_FILE_EXISTS("dump_cfg_run0.melt.cfg"); + auto lines = read_lines("dump_cfg_run0.melt.cfg"); ASSERT_EQ(lines.size(), 124); ASSERT_THAT(lines[0], Eq("Number of particles = 32")); - delete_file("dump_cfg_run0.melt"); + delete_file("dump_cfg_run0.melt.cfg"); } TEST_F(DumpCfgTest, unwrap_run0) { - auto dump_file = "dump_cfg_unwrap_run*.melt"; + auto dump_file = "dump_cfg_unwrap_run*.melt.cfg"; auto fields = "mass type xsu ysu zsu id proc procp1 x y z ix iy iz vx vy vz fx fy fz"; generate_dump(dump_file, fields, "", 0); - ASSERT_FILE_EXISTS("dump_cfg_unwrap_run0.melt"); - auto lines = read_lines("dump_cfg_unwrap_run0.melt"); + ASSERT_FILE_EXISTS("dump_cfg_unwrap_run0.melt.cfg"); + auto lines = read_lines("dump_cfg_unwrap_run0.melt.cfg"); ASSERT_EQ(lines.size(), 124); ASSERT_THAT(lines[0], Eq("Number of particles = 32")); - delete_file("dump_cfg_unwrap_run0.melt"); + delete_file("dump_cfg_unwrap_run0.melt.cfg"); } TEST_F(DumpCfgTest, no_buffer_run0) { - auto dump_file = "dump_cfg_no_buffer_run*.melt"; + auto dump_file = "dump_cfg_no_buffer_run*.melt.cfg"; auto fields = "mass type xsu ysu zsu id proc procp1 x y z ix iy iz vx vy vz fx fy fz"; generate_dump(dump_file, fields, "buffer no", 0); - ASSERT_FILE_EXISTS("dump_cfg_no_buffer_run0.melt"); - auto lines = read_lines("dump_cfg_no_buffer_run0.melt"); + ASSERT_FILE_EXISTS("dump_cfg_no_buffer_run0.melt.cfg"); + auto lines = read_lines("dump_cfg_no_buffer_run0.melt.cfg"); ASSERT_EQ(lines.size(), 124); ASSERT_THAT(lines[0], Eq("Number of particles = 32")); - delete_file("dump_cfg_no_buffer_run0.melt"); + delete_file("dump_cfg_no_buffer_run0.melt.cfg"); } TEST_F(DumpCfgTest, no_unwrap_no_buffer_run0) { - auto dump_file = "dump_cfg_no_unwrap_no_buffer_run*.melt"; + auto dump_file = "dump_cfg_no_unwrap_no_buffer_run*.melt.cfg"; auto fields = "mass type xs ys zs id proc procp1 x y z ix iy iz vx vy vz fx fy fz"; generate_dump(dump_file, fields, "buffer no", 0); - ASSERT_FILE_EXISTS("dump_cfg_no_unwrap_no_buffer_run0.melt"); - auto lines = read_lines("dump_cfg_no_unwrap_no_buffer_run0.melt"); + ASSERT_FILE_EXISTS("dump_cfg_no_unwrap_no_buffer_run0.melt.cfg"); + auto lines = read_lines("dump_cfg_no_unwrap_no_buffer_run0.melt.cfg"); ASSERT_EQ(lines.size(), 124); ASSERT_THAT(lines[0], Eq("Number of particles = 32")); - delete_file("dump_cfg_no_unwrap_no_buffer_run0.melt"); + delete_file("dump_cfg_no_unwrap_no_buffer_run0.melt.cfg"); } diff --git a/unittest/formats/test_dump_cfg_gz.cpp b/unittest/formats/test_dump_cfg_gz.cpp new file mode 100644 index 0000000000..f04b1db6e2 --- /dev/null +++ b/unittest/formats/test_dump_cfg_gz.cpp @@ -0,0 +1,129 @@ +/* ---------------------------------------------------------------------- + LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator + http://lammps.sandia.gov, Sandia National Laboratories + Steve Plimpton, sjplimp@sandia.gov + + Copyright (2003) Sandia Corporation. Under the terms of Contract + DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains + certain rights in this software. This software is distributed under + the GNU General Public License. + + See the README file in the top-level LAMMPS directory. +------------------------------------------------------------------------- */ + +#include "gtest/gtest.h" +#include "gmock/gmock.h" +#include "fmt/format.h" +#include "utils.h" +#include "../testing/core.h" +#include "../testing/systems/melt.h" +#include "../testing/utils.h" + +char * GZIP_BINARY = nullptr; + +using ::testing::Eq; + +class DumpCfgGZTest : public MeltTest { + std::string dump_style = "cfg"; +public: + void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file, std::string compression_style, + std::string fields, std::string dump_modify_options, int ntimesteps) { + if (!verbose) ::testing::internal::CaptureStdout(); + command(fmt::format("dump id0 all {} 1 {} {}", dump_style, text_file, fields)); + command(fmt::format("dump id1 all {} 1 {} {}", compression_style, compressed_file, fields)); + + if (!dump_modify_options.empty()) { + command(fmt::format("dump_modify id0 {}", dump_modify_options)); + command(fmt::format("dump_modify id1 {}", dump_modify_options)); + } + + command(fmt::format("run {}", ntimesteps)); + if (!verbose) ::testing::internal::GetCapturedStdout(); + } + + std::string convert_compressed_to_text(std::string compressed_file) { + if (!verbose) ::testing::internal::CaptureStdout(); + std::string converted_file = compressed_file.substr(0, compressed_file.find_last_of('.')); + std::string cmdline = fmt::format("{} -d -c {} > {}", GZIP_BINARY, compressed_file, converted_file); + system(cmdline.c_str()); + if (!verbose) ::testing::internal::GetCapturedStdout(); + return converted_file; + } +}; + +TEST_F(DumpCfgGZTest, compressed_run0) +{ + if(!GZIP_BINARY) GTEST_SKIP(); + + auto text_files = "dump_cfg_gz_text_run*.melt.cfg"; + auto compressed_files = "dump_cfg_gz_compressed_run*.melt.cfg.gz"; + auto text_file = "dump_cfg_gz_text_run0.melt.cfg"; + auto compressed_file = "dump_cfg_gz_compressed_run0.melt.cfg.gz"; + auto fields = "mass type xs ys zs id proc procp1 x y z ix iy iz vx vy vz fx fy fz"; + + generate_text_and_compressed_dump(text_files, compressed_files, "cfg/gz", fields, "", 0); + + TearDown(); + + ASSERT_FILE_EXISTS(text_file); + ASSERT_FILE_EXISTS(compressed_file); + + auto converted_file = convert_compressed_to_text(compressed_file); + + ASSERT_FILE_EXISTS(converted_file); + ASSERT_FILE_EQUAL(text_file, converted_file); + delete_file(text_file); + delete_file(compressed_file); + delete_file(converted_file); +} + + +TEST_F(DumpCfgGZTest, compressed_unwrap_run0) +{ + if(!GZIP_BINARY) GTEST_SKIP(); + + auto text_files = "dump_cfg_unwrap_gz_text_run*.melt.cfg"; + auto compressed_files = "dump_cfg_unwrap_gz_compressed_run*.melt.cfg.gz"; + auto text_file = "dump_cfg_unwrap_gz_text_run0.melt.cfg"; + auto compressed_file = "dump_cfg_unwrap_gz_compressed_run0.melt.cfg.gz"; + auto fields = "mass type xsu ysu zsu id proc procp1 x y z ix iy iz vx vy vz fx fy fz"; + + generate_text_and_compressed_dump(text_files, compressed_files, "cfg/gz", fields, "", 0); + + TearDown(); + + ASSERT_FILE_EXISTS(text_file); + ASSERT_FILE_EXISTS(compressed_file); + + auto converted_file = convert_compressed_to_text(compressed_file); + + ASSERT_FILE_EXISTS(converted_file); + ASSERT_FILE_EQUAL(text_file, converted_file); + delete_file(text_file); + delete_file(compressed_file); + delete_file(converted_file); +} + +int main(int argc, char **argv) +{ + MPI_Init(&argc, &argv); + ::testing::InitGoogleMock(&argc, argv); + + // handle arguments passed via environment variable + if (const char *var = getenv("TEST_ARGS")) { + std::vector env = utils::split_words(var); + for (auto arg : env) { + if (arg == "-v") { + verbose = true; + } + } + } + + GZIP_BINARY = getenv("GZIP_BINARY"); + + if ((argc > 1) && (strcmp(argv[1], "-v") == 0)) verbose = true; + + int rv = RUN_ALL_TESTS(); + MPI_Finalize(); + return rv; +}