Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"

This commit is contained in:
Karl Hammond
2023-07-11 17:57:22 -05:00
parent 4bfffce703
commit 6123883324
318 changed files with 319 additions and 319 deletions

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@ -6,7 +6,7 @@ fix_modify AtC add_molecule command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> add_molecule <small|large> <tag> <group-ID>

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@ -6,7 +6,7 @@ fix_modify AtC add_species command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> add_species <tag> <group|type> <ID>

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@ -6,7 +6,7 @@ fix_modify AtC atom_element_map command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> atom_element_map <eulerian|lagrangian> [<frequency>]

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@ -6,7 +6,7 @@ fix_modify AtC atom_weight command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> atom_weight <method> <args>

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@ -6,7 +6,7 @@ fix_modify AtC atomic_charge command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> <include|omit> atomic_charge

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@ -6,7 +6,7 @@ fix_modify AtC boundary_dynamics command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> boundary_dynamics <on|damped_harmonic|prescribed|coupled|none>

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@ -6,7 +6,7 @@ fix_modify AtC boundary_faceset command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> boundary_faceset <is|add> <faceset_name>

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@ -6,7 +6,7 @@ fix_modify AtC boundary type command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> boundary type <atom-type-id>

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@ -6,7 +6,7 @@ fix_modify AtC consistent_fe_initialization command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> consistent_fe_initialization <on|off>

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@ -6,7 +6,7 @@ fix_modify AtC control localized_lambda command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> control localized_lambda <on|off>

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@ -6,7 +6,7 @@ fix_modify AtC control momentum command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> control <physics_type> <solution_parameter> <value>
fix_modify AtC control momentum none

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@ -6,7 +6,7 @@ fix_modify AtC control thermal command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> control <physics_type> <solution_parameter> <value>
fix_modify <AtC fixID> control thermal <control_type> <optional_args>

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@ -6,7 +6,7 @@ fix_modify AtC decomposition command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> decomposition <type>

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@ -6,7 +6,7 @@ fix_modify AtC extrinsic electron_integration command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> extrinsic electron_integration <integration_type> [<num_subcycle_steps>]

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@ -6,7 +6,7 @@ fix_modify AtC equilibrium_start command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> equilibrium_start <on|off>

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@ -6,7 +6,7 @@ fix_modify AtC extrinsic exchange command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> extrinsic exchange <on|off>

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@ -6,7 +6,7 @@ fix_modify AtC fe_md_boundary command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> fe_md_boundary <faceset|interpolate|no_boundary>

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@ -6,7 +6,7 @@ fix_modify AtC filter scale command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> filter scale <scale>

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@ -6,7 +6,7 @@ fix_modify AtC filter type command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> filter type <exponential|step|no_filter>

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@ -6,7 +6,7 @@ fix_modify AtC fix command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> fix <field> <nodeset> <constant|function>

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@ -6,7 +6,7 @@ fix_modify AtC fix_flux command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> fix_flux <field> <face_set> <value|function>

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@ -6,7 +6,7 @@ fix_modify AtC computes command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> computes <add|delete> <per-atom compute-ID> <volume|number>

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@ -6,7 +6,7 @@ fix_modify AtC fields command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> fields <all|none>
fix_modify <AtC fixID> fields <add|delete> <list_of_fields>

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@ -6,7 +6,7 @@ fix_modify AtC gradients command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> gradients <add|delete> <list_of_fields>

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@ -6,7 +6,7 @@ fix_modify AtC kernel command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> kernel <type> <parameters>

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@ -6,7 +6,7 @@ fix_modify AtC on_the_fly command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> on_the_fly <bond|kernel> <on|off>

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@ -6,7 +6,7 @@ fix_modify AtC rates command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> rates <add|delete> <list_of_fields>

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@ -6,7 +6,7 @@ fix_modify AtC initial command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> initial <field> <nodeset> <constant|function>

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@ -6,7 +6,7 @@ fix_modify AtC internal_element_set command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> internal_element_set <element_set_name>

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@ -6,7 +6,7 @@ fix_modify AtC internal_quadrature command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> internal_quadrature <on|off> [region]

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@ -6,7 +6,7 @@ fix_modify AtC kernel_bandwidth command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> kernel_bandwidth <value>

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@ -6,7 +6,7 @@ fix_modify AtC control lumped_lambda_solve command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> control lumped_lambda_solve <on|off>

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@ -6,7 +6,7 @@ fix_modify AtC control mask_direction command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> control mask_direction <direction> <on|off>

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@ -6,7 +6,7 @@ fix_modify AtC mass_matrix command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> mass_matrix <fe|md_fe>

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@ -6,7 +6,7 @@ fix_modify AtC material command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> material <elementset_name> <material_id>

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@ -6,7 +6,7 @@ fix_modify AtC mesh add_to_nodeset command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> mesh add_to_nodeset <id> <xmin> <xmax> <ymin> <ymax> <zmin> <zmax>

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@ -6,7 +6,7 @@ fix_modify AtC mesh create command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> mesh create <nx> <ny> <nz> <region-ID> <f|p> <f|p> <f|p>

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@ -6,7 +6,7 @@ fix_modify AtC mesh create_elementset command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> mesh create_elementset <id> <xmin> <xmax> <ymin> <ymax> <zmin> <zmax>

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@ -6,7 +6,7 @@ fix_modify AtC mesh create_faceset box command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> mesh create_faceset <id> box <xmin> <xmax> <ymin> <ymax> <zmin> <zmax> <in|out> [units]

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@ -6,7 +6,7 @@ fix_modify AtC mesh create_faceset plane command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> mesh create_faceset <id> plane <x|y|z> <val1> <x|y|z> <lval2> <uval2> [units]

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@ -6,7 +6,7 @@ fix_modify AtC mesh create_nodeset command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> mesh create_nodeset <id> <xmin> <xmax> <ymin> <ymax> <zmin> <zmax>

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@ -6,7 +6,7 @@ fix_modify AtC mesh delete_elements command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> mesh delete_elements <id>

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@ -6,7 +6,7 @@ fix_modify AtC mesh nodeset_to_elementset command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> mesh nodeset_to_elementset <nodeset_id> <elementset_id> <max/min>

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@ -6,7 +6,7 @@ fix_modify AtC mesh output command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> mesh output <file_prefix>

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@ -6,7 +6,7 @@ fix_modify AtC mesh quadrature command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> mesh quatrature <quad>

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@ -6,7 +6,7 @@ fix_modify AtC mesh read command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> mesh read <f|p> <f|p> <f|p>

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@ -6,7 +6,7 @@ fix_modify AtC mesh write command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> mesh write <f|p> <f|p> <f|p>

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@ -6,7 +6,7 @@ fix_modify AtC output command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> output <filename_prefix> <frequency> [text|full_text|binary|vector_components|tensor_components]
fix_modify <AtC fixID> output index [step|time]

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@ -6,7 +6,7 @@ fix_modify AtC output boundary_integral command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> output boundary_integral <fieldname> faceset [name]

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@ -6,7 +6,7 @@ fix_modify AtC output contour_integral command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> output contour_integral <fieldname> faceset <name> [axis [x|y|z]]

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@ -6,7 +6,7 @@ fix_modify AtC output nodeset command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> output nodeset <nodeset_name> <operation>

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@ -6,7 +6,7 @@ fix_modify AtC output volume_integral command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> output volume_integral <elementset_name> <field>

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@ -9,7 +9,7 @@ fix_modify AtC bond_interactions command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> pair_interactions <on|off>
fix_modify <AtC fixID> bond_interactions <on|off>

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@ -6,7 +6,7 @@ fix_modify AtC poisson_solver command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> poisson_solver mesh create <nx> <ny> <nz> <region-ID> <f|p> <f|p> <f|p>

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@ -6,7 +6,7 @@ fix_modify AtC read_restart command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> read_restart <file_name>

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@ -6,7 +6,7 @@ fix_modify AtC remove_molecule command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> remove_molecule <tag>

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@ -6,7 +6,7 @@ fix_modify AtC remove_source command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> remove_source <field> <element_set>

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@ -6,7 +6,7 @@ fix_modify AtC remove_species command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> remove_species <tag>

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@ -6,7 +6,7 @@ fix_modify AtC reset_atomic_reference_positions command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> reset_atomic_reference_positions

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@ -6,7 +6,7 @@ fix_modify AtC reset_time command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> reset_time <value>

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@ -6,7 +6,7 @@ fix_modify AtC sample_frequency command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> sample_frequency <freq>

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@ -6,7 +6,7 @@ fix_modify AtC set reference_potential_energy command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> set reference_potential_energy [<value|filename>]

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@ -6,7 +6,7 @@ fix_modify AtC source command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> source <field> <element_set> <value|function>

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@ -6,7 +6,7 @@ fix_modify AtC source_integration command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> source_integration <fe|atom>

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@ -6,7 +6,7 @@ fix_modify AtC temperature_definition command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> temperature_definition <kinetic|total>

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@ -6,7 +6,7 @@ fix_modify AtC filter command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> filter <on|off|equilibrate>

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@ -6,7 +6,7 @@ fix_modify AtC time_integration command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> time_integration <descriptor>

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@ -6,7 +6,7 @@ fix_modify AtC track_displacement command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> track_displacement <on|off>

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@ -6,7 +6,7 @@ fix_modify AtC unfix command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> unfix <field> <nodeset>

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@ -6,7 +6,7 @@ fix_modify AtC unfix_flux command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> unfix_flux <field> <face_set> <value|function>

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@ -6,7 +6,7 @@ fix_modify AtC write_atom_weights command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> write_atom_weights <filename> <frequency>

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@ -6,7 +6,7 @@ fix_modify AtC write_restart command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fix_modify <AtC fixID> write_restart <file_name>

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@ -6,7 +6,7 @@ compute property/grid command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID property/grid Nx Ny Nz input1 input2 ...

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@ -6,7 +6,7 @@ compute reduce/chunk command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID reduce/chunk chunkID mode input1 input2 ...

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@ -6,7 +6,7 @@ compute saed command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID saed lambda type1 type2 ... typeN keyword value ...

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@ -6,7 +6,7 @@ compute slice command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID slice Nstart Nstop Nskip input1 input2 ...

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@ -6,7 +6,7 @@ compute smd/contact/radius command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/contact/radius

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@ -6,7 +6,7 @@ compute smd/damage command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/damage

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@ -6,7 +6,7 @@ compute smd/hourglass/error command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/hourglass/error

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@ -6,7 +6,7 @@ compute smd/internal/energy command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/internal/energy

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@ -6,7 +6,7 @@ compute smd/plastic/strain command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/plastic/strain

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@ -6,7 +6,7 @@ compute smd/plastic/strain/rate command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/plastic/strain/rate

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@ -6,7 +6,7 @@ compute smd/rho command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/rho

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@ -6,7 +6,7 @@ compute smd/tlsph/defgrad command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/tlsph/defgrad

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@ -6,7 +6,7 @@ compute smd/tlsph/dt command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/tlsph/dt

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@ -6,7 +6,7 @@ compute smd/tlsph/num/neighs command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/tlsph/num/neighs

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@ -6,7 +6,7 @@ compute smd/tlsph/shape command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/tlsph/shape

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@ -6,7 +6,7 @@ compute smd/tlsph/strain command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/tlsph/strain

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@ -6,7 +6,7 @@ compute smd/tlsph/strain/rate command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/tlsph/strain/rate

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@ -6,7 +6,7 @@ compute smd/tlsph/stress command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/tlsph/stress

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@ -6,7 +6,7 @@ compute smd/triangle/vertices command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/triangle/vertices

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@ -6,7 +6,7 @@ compute smd/vol command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID smd/vol

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@ -26,7 +26,7 @@ compute sna/grid/local command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID sna/atom rcutfac rfac0 twojmax R_1 R_2 ... w_1 w_2 ... keyword values ...
compute ID group-ID snad/atom rcutfac rfac0 twojmax R_1 R_2 ... w_1 w_2 ... keyword values ...

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@ -6,7 +6,7 @@ compute sph/e/atom command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID sph/e/atom

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@ -6,7 +6,7 @@ compute sph/rho/atom command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID sph/rho/atom

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@ -6,7 +6,7 @@ compute sph/t/atom command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
compute ID group-ID sph/t/atom

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@ -98,7 +98,7 @@ dump_modify options for dump image/movie
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
dump_modify dump-ID keyword values ...

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@ -6,7 +6,7 @@ dump molfile command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
dump ID group-ID molfile N file format path

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@ -10,7 +10,7 @@ dump netcdf/mpiio command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
dump ID group-ID netcdf N file args
dump ID group-ID netcdf/mpiio N file args

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@ -6,7 +6,7 @@ fitpod command
Syntax
""""""
.. parsed-literal::
.. code-block:: LAMMPS
fitpod Ta_param.pod Ta_data.pod

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