From 6234087ef823dc87e62ca20510c9757240a7b36a Mon Sep 17 00:00:00 2001
From: sjplimp <sjplimp@f3b2605a-c512-4ea7-a41b-209d697bcdaa>
Date: Fri, 27 Jan 2012 23:39:14 +0000
Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7593
 f3b2605a-c512-4ea7-a41b-209d697bcdaa

---
 doc/Manual.html                    | 14 +++--
 doc/Manual.txt                     | 12 ++--
 doc/Section_accelerate.html        |  8 +--
 doc/Section_accelerate.txt         |  8 +--
 doc/Section_howto.html             | 12 ++--
 doc/Section_howto.txt              | 12 ++--
 doc/Section_python.html            |  4 +-
 doc/Section_python.txt             |  4 +-
 doc/Section_start.html             | 97 ++++++++++++++++++++++++------
 doc/Section_start.txt              | 97 ++++++++++++++++++++++++------
 doc/angle_charmm.html              |  2 +-
 doc/angle_charmm.txt               |  2 +-
 doc/angle_class2.html              |  2 +-
 doc/angle_class2.txt               |  2 +-
 doc/angle_cosine.html              |  2 +-
 doc/angle_cosine.txt               |  2 +-
 doc/angle_cosine_delta.html        |  2 +-
 doc/angle_cosine_delta.txt         |  2 +-
 doc/angle_cosine_periodic.html     |  2 +-
 doc/angle_cosine_periodic.txt      |  2 +-
 doc/angle_cosine_shift.html        |  2 +-
 doc/angle_cosine_shift.txt         |  2 +-
 doc/angle_cosine_shift_exp.html    |  2 +-
 doc/angle_cosine_shift_exp.txt     |  2 +-
 doc/angle_cosine_squared.html      |  2 +-
 doc/angle_cosine_squared.txt       |  2 +-
 doc/angle_harmonic.html            |  2 +-
 doc/angle_harmonic.txt             |  2 +-
 doc/angle_table.html               |  2 +-
 doc/angle_table.txt                |  2 +-
 doc/bond_class2.html               |  2 +-
 doc/bond_class2.txt                |  2 +-
 doc/bond_fene.html                 |  2 +-
 doc/bond_fene.txt                  |  2 +-
 doc/bond_fene_expand.html          |  2 +-
 doc/bond_fene_expand.txt           |  2 +-
 doc/bond_harmonic.html             |  2 +-
 doc/bond_harmonic.txt              |  2 +-
 doc/bond_harmonic_shift.html       |  2 +-
 doc/bond_harmonic_shift.txt        |  2 +-
 doc/bond_harmonic_shift_cut.html   |  2 +-
 doc/bond_harmonic_shift_cut.txt    |  2 +-
 doc/bond_morse.html                |  2 +-
 doc/bond_morse.txt                 |  2 +-
 doc/bond_nonlinear.html            |  2 +-
 doc/bond_nonlinear.txt             |  2 +-
 doc/bond_quartic.html              |  2 +-
 doc/bond_quartic.txt               |  2 +-
 doc/bond_table.html                |  2 +-
 doc/bond_table.txt                 |  2 +-
 doc/compute_pe.html                |  2 +-
 doc/compute_pe.txt                 |  2 +-
 doc/compute_pressure.html          |  2 +-
 doc/compute_pressure.txt           |  2 +-
 doc/compute_temp.html              |  2 +-
 doc/compute_temp.txt               |  2 +-
 doc/compute_temp_partial.html      |  2 +-
 doc/compute_temp_partial.txt       |  2 +-
 doc/dihedral_charmm.html           |  2 +-
 doc/dihedral_charmm.txt            |  2 +-
 doc/dihedral_class2.html           |  2 +-
 doc/dihedral_class2.txt            |  2 +-
 doc/dihedral_cosine_shift_exp.html |  2 +-
 doc/dihedral_cosine_shift_exp.txt  |  2 +-
 doc/dihedral_harmonic.html         |  2 +-
 doc/dihedral_harmonic.txt          |  2 +-
 doc/dihedral_helix.html            |  2 +-
 doc/dihedral_helix.txt             |  2 +-
 doc/dihedral_multi_harmonic.html   |  2 +-
 doc/dihedral_multi_harmonic.txt    |  2 +-
 doc/dihedral_opls.html             |  2 +-
 doc/dihedral_opls.txt              |  2 +-
 doc/echo.html                      |  2 +-
 doc/echo.txt                       |  2 +-
 doc/fix_addforce.html              |  2 +-
 doc/fix_addforce.txt               |  2 +-
 doc/fix_aveforce.html              |  2 +-
 doc/fix_aveforce.txt               |  2 +-
 doc/fix_enforce2d.html             |  2 +-
 doc/fix_enforce2d.txt              |  2 +-
 doc/fix_freeze.html                |  2 +-
 doc/fix_freeze.txt                 |  2 +-
 doc/fix_gravity.html               |  2 +-
 doc/fix_gravity.txt                |  2 +-
 doc/fix_nh.html                    |  2 +-
 doc/fix_nh.txt                     |  2 +-
 doc/fix_nve.html                   |  2 +-
 doc/fix_nve.txt                    |  2 +-
 doc/fix_nve_sphere.html            |  2 +-
 doc/fix_nve_sphere.txt             |  2 +-
 doc/fix_qeq_comb.html              |  2 +-
 doc/fix_qeq_comb.txt               |  2 +-
 doc/fix_setforce.html              |  2 +-
 doc/fix_setforce.txt               |  2 +-
 doc/fix_shake.html                 |  2 +-
 doc/fix_shake.txt                  |  2 +-
 doc/fix_temp_berendsen.html        |  2 +-
 doc/fix_temp_berendsen.txt         |  2 +-
 doc/fix_temp_rescale.html          |  2 +-
 doc/fix_temp_rescale.txt           |  2 +-
 doc/fix_viscous.html               |  2 +-
 doc/fix_viscous.txt                |  2 +-
 doc/improper_class2.html           |  2 +-
 doc/improper_class2.txt            |  2 +-
 doc/improper_cvff.html             |  2 +-
 doc/improper_cvff.txt              |  2 +-
 doc/improper_harmonic.html         |  2 +-
 doc/improper_harmonic.txt          |  2 +-
 doc/improper_umbrella.html         |  2 +-
 doc/improper_umbrella.txt          |  2 +-
 doc/jump.html                      |  4 +-
 doc/jump.txt                       |  4 +-
 doc/log.html                       |  2 +-
 doc/log.txt                        |  2 +-
 doc/neb.html                       |  2 +-
 doc/neb.txt                        |  2 +-
 doc/neighbor.html                  |  2 +-
 doc/neighbor.txt                   |  2 +-
 doc/next.html                      |  2 +-
 doc/next.txt                       |  2 +-
 doc/package.html                   |  8 +--
 doc/package.txt                    |  8 +--
 doc/pair_adp.html                  |  2 +-
 doc/pair_adp.txt                   |  2 +-
 doc/pair_airebo.html               |  2 +-
 doc/pair_airebo.txt                |  2 +-
 doc/pair_born.html                 |  2 +-
 doc/pair_born.txt                  |  2 +-
 doc/pair_brownian.html             |  2 +-
 doc/pair_brownian.txt              |  2 +-
 doc/pair_buck.html                 |  2 +-
 doc/pair_buck.txt                  |  2 +-
 doc/pair_buck_coul.html            |  2 +-
 doc/pair_buck_coul.txt             |  2 +-
 doc/pair_charmm.html               |  2 +-
 doc/pair_charmm.txt                |  2 +-
 doc/pair_class2.html               |  2 +-
 doc/pair_class2.txt                |  2 +-
 doc/pair_colloid.html              |  2 +-
 doc/pair_colloid.txt               |  2 +-
 doc/pair_comb.html                 |  2 +-
 doc/pair_comb.txt                  |  2 +-
 doc/pair_coul.html                 |  2 +-
 doc/pair_coul.txt                  |  2 +-
 doc/pair_dipole.html               |  2 +-
 doc/pair_dipole.txt                |  2 +-
 doc/pair_dpd.html                  |  2 +-
 doc/pair_dpd.txt                   |  2 +-
 doc/pair_eam.html                  |  2 +-
 doc/pair_eam.txt                   |  2 +-
 doc/pair_edip.html                 |  2 +-
 doc/pair_edip.txt                  |  2 +-
 doc/pair_eim.html                  |  2 +-
 doc/pair_eim.txt                   |  2 +-
 doc/pair_gauss.html                |  4 +-
 doc/pair_gauss.txt                 |  2 +-
 doc/pair_gayberne.html             |  2 +-
 doc/pair_gayberne.txt              |  2 +-
 doc/pair_gran.html                 |  2 +-
 doc/pair_gran.txt                  |  2 +-
 doc/pair_gromacs.html              |  2 +-
 doc/pair_gromacs.txt               |  2 +-
 doc/pair_hbond_dreiding.html       |  2 +-
 doc/pair_hbond_dreiding.txt        |  2 +-
 doc/pair_hybrid.html               |  2 +-
 doc/pair_hybrid.txt                |  2 +-
 doc/pair_line_lj.html              |  2 +-
 doc/pair_line_lj.txt               |  2 +-
 doc/pair_lj.html                   |  2 +-
 doc/pair_lj.txt                    |  2 +-
 doc/pair_lj96.html                 |  2 +-
 doc/pair_lj96.txt                  |  2 +-
 doc/pair_lj_coul.html              |  2 +-
 doc/pair_lj_coul.txt               |  2 +-
 doc/pair_lj_cubic.html             |  2 +-
 doc/pair_lj_cubic.txt              |  2 +-
 doc/pair_lj_expand.html            |  2 +-
 doc/pair_lj_expand.txt             |  2 +-
 doc/pair_lj_sf.html                |  2 +-
 doc/pair_lj_sf.txt                 |  2 +-
 doc/pair_lj_smooth.html            |  2 +-
 doc/pair_lj_smooth.txt             |  2 +-
 doc/pair_lj_smooth_linear.html     |  2 +-
 doc/pair_lj_smooth_linear.txt      |  2 +-
 doc/pair_lubricate.html            |  2 +-
 doc/pair_lubricate.txt             |  2 +-
 doc/pair_morse.html                |  2 +-
 doc/pair_morse.txt                 |  2 +-
 doc/pair_peri.html                 |  2 +-
 doc/pair_peri.txt                  |  2 +-
 doc/pair_resquared.html            |  2 +-
 doc/pair_resquared.txt             |  2 +-
 doc/pair_sdk.html                  |  2 +-
 doc/pair_sdk.txt                   |  2 +-
 doc/pair_soft.html                 |  2 +-
 doc/pair_soft.txt                  |  2 +-
 doc/pair_sw.html                   |  2 +-
 doc/pair_sw.txt                    |  2 +-
 doc/pair_table.html                |  2 +-
 doc/pair_table.txt                 |  2 +-
 doc/pair_tersoff.html              |  2 +-
 doc/pair_tersoff.txt               |  2 +-
 doc/pair_tersoff_zbl.html          |  2 +-
 doc/pair_tersoff_zbl.txt           |  2 +-
 doc/pair_tri_lj.html               |  2 +-
 doc/pair_tri_lj.txt                |  2 +-
 doc/pair_yukawa.html               |  2 +-
 doc/pair_yukawa.txt                |  2 +-
 doc/pair_yukawa_colloid.html       |  2 +-
 doc/pair_yukawa_colloid.txt        |  2 +-
 doc/partition.html                 |  4 +-
 doc/partition.txt                  |  4 +-
 doc/prd.html                       |  2 +-
 doc/prd.txt                        |  2 +-
 doc/processors.html                | 12 ++--
 doc/processors.txt                 | 12 ++--
 doc/run_style.html                 |  4 +-
 doc/run_style.txt                  |  4 +-
 doc/suffix.html                    |  4 +-
 doc/suffix.txt                     |  4 +-
 doc/temper.html                    |  4 +-
 doc/temper.txt                     |  4 +-
 doc/variable.html                  |  8 +--
 doc/variable.txt                   |  8 +--
 224 files changed, 443 insertions(+), 319 deletions(-)

diff --git a/doc/Manual.html b/doc/Manual.html
index afd2d10ff4..287d4aa29c 100644
--- a/doc/Manual.html
+++ b/doc/Manual.html
@@ -100,15 +100,17 @@ it gives quick access to documentation for all LAMMPS commands.
 <BR>
   2.3 <A HREF = "Section_start.html#start_3">Making LAMMPS with optional packages</A> 
 <BR>
-  2.4 <A HREF = "Section_start.html#start_4">Building LAMMPS as a library</A> 
+  2.4 <A HREF = "Section_start.html#start_4">Building LAMMPS via the Make.py script</A> 
 <BR>
-  2.5 <A HREF = "Section_start.html#start_5">Running LAMMPS</A> 
+  2.5 <A HREF = "Section_start.html#start_5">Building LAMMPS as a library</A> 
 <BR>
-  2.6 <A HREF = "Section_start.html#start_6">Command-line options</A> 
+  2.6 <A HREF = "Section_start.html#start_6">Running LAMMPS</A> 
 <BR>
-  2.7 <A HREF = "Section_start.html#start_7">Screen output</A> 
+  2.7 <A HREF = "Section_start.html#start_7">Command-line options</A> 
 <BR>
-  2.8 <A HREF = "2_8">Tips for users of previous versions</A> 
+  2.8 <A HREF = "Section_start.html#start_8">Screen output</A> 
+<BR>
+  2.9 <A HREF = "Section_start.html#start_9">Tips for users of previous versions</A> 
 <BR></UL>
 <LI><A HREF = "Section_commands.html">Commands</A> 
 
@@ -393,6 +395,8 @@ it gives quick access to documentation for all LAMMPS commands.
 
 
 
+
+
 
 
 
diff --git a/doc/Manual.txt b/doc/Manual.txt
index 62e27cc4a7..881853c11b 100644
--- a/doc/Manual.txt
+++ b/doc/Manual.txt
@@ -86,11 +86,12 @@ it gives quick access to documentation for all LAMMPS commands.
   2.1 "What's in the LAMMPS distribution"_start_1 :ulb,b
   2.2 "Making LAMMPS"_start_2 :b
   2.3 "Making LAMMPS with optional packages"_start_3 :b
-  2.4 "Building LAMMPS as a library"_start_4 :b
-  2.5 "Running LAMMPS"_start_5 :b
-  2.6 "Command-line options"_start_6 :b
-  2.7 "Screen output"_start_7 :b
-  2.8 "Tips for users of previous versions"_2_8 :ule,b
+  2.4 "Building LAMMPS via the Make.py script"_start_4 :b
+  2.5 "Building LAMMPS as a library"_start_5 :b
+  2.6 "Running LAMMPS"_start_6 :b
+  2.7 "Command-line options"_start_7 :b
+  2.8 "Screen output"_start_8 :b
+  2.9 "Tips for users of previous versions"_start_9 :ule,b
 "Commands"_Section_commands.html :l
   3.1 "LAMMPS input script"_cmd_1 :ulb,b
   3.2 "Parsing rules"_cmd_2 :b
@@ -177,6 +178,7 @@ it gives quick access to documentation for all LAMMPS commands.
 :link(start_6,Section_start.html#start_6)
 :link(start_7,Section_start.html#start_7)
 :link(start_8,Section_start.html#start_8)
+:link(start_9,Section_start.html#start_9)
 
 :link(cmd_1,Section_commands.html#cmd_1)
 :link(cmd_2,Section_commands.html#cmd_2)
diff --git a/doc/Section_accelerate.html b/doc/Section_accelerate.html
index 3311b552b9..b37c7f452e 100644
--- a/doc/Section_accelerate.html
+++ b/doc/Section_accelerate.html
@@ -46,7 +46,7 @@ style exist in LAMMPS:
 </UL>
 <P>Assuming you have built LAMMPS with the appropriate package, these
 styles can be invoked by specifying them explicitly in your input
-script.  Or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+script.  Or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> to invoke the accelerated versions
 automatically, without changing your input script.  The
 <A HREF = "suffix.html">suffix</A> command allows you to set a suffix explicitly and
@@ -318,7 +318,7 @@ and in many cases it will be more efficient to run this way.
 </P>
 <UL><LI>To invoke specific styles from the GPU package, you can either append
 "gpu" to the style name (e.g. pair_style lj/cut/gpu), or use the
-<A HREF = "Section_start.html#start_6">-suffix command-line switch</A>, or use the
+<A HREF = "Section_start.html#start_7">-suffix command-line switch</A>, or use the
 <A HREF = "suffix.html">suffix</A> command. 
 
 <LI>The <A HREF = "newton.html">newton pair</A> setting must be <I>off</I>. 
@@ -483,7 +483,7 @@ suffix are as follows:
 </P>
 <UL><LI>To invoke specific styles from the USER-CUDA package, you can either
 append "cuda" to the style name (e.g. pair_style lj/cut/cuda), or use
-the <A HREF = "Section_start.html#start_6">-suffix command-line switch</A>, or use
+the <A HREF = "Section_start.html#start_7">-suffix command-line switch</A>, or use
 the <A HREF = "suffix.html">suffix</A> command.  One exception is that the
 <A HREF = "kspace_style.html">kspace_style pppm/cuda</A> command has to be requested
 explicitly. 
@@ -491,7 +491,7 @@ explicitly.
 <LI>To use the USER-CUDA package with its default settings, no additional
 command is needed in your input script.  This is because when LAMMPS
 starts up, it detects if it has been built with the USER-CUDA package.
-See the <A HREF = "Section_start.html#start_6">-cuda command-line switch</A> for
+See the <A HREF = "Section_start.html#start_7">-cuda command-line switch</A> for
 more details. 
 
 <LI>To change settings for the USER-CUDA package at run-time, the <A HREF = "package.html">package
diff --git a/doc/Section_accelerate.txt b/doc/Section_accelerate.txt
index 76bddc84f3..c1721a87f6 100644
--- a/doc/Section_accelerate.txt
+++ b/doc/Section_accelerate.txt
@@ -44,7 +44,7 @@ style exist in LAMMPS:
 Assuming you have built LAMMPS with the appropriate package, these
 styles can be invoked by specifying them explicitly in your input
 script.  Or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 to invoke the accelerated versions
+switch"_Section_start.html#start_7 to invoke the accelerated versions
 automatically, without changing your input script.  The
 "suffix"_suffix.html command allows you to set a suffix explicitly and
 to turn off/on the comand-line switch setting, both from within your
@@ -312,7 +312,7 @@ Additional input script requirements to run pair or PPPM styles with a
 
 To invoke specific styles from the GPU package, you can either append
 "gpu" to the style name (e.g. pair_style lj/cut/gpu), or use the
-"-suffix command-line switch"_Section_start.html#start_6, or use the
+"-suffix command-line switch"_Section_start.html#start_7, or use the
 "suffix"_suffix.html command. :ulb,l
 
 The "newton pair"_newton.html setting must be {off}. :l
@@ -476,7 +476,7 @@ suffix are as follows:
 
 To invoke specific styles from the USER-CUDA package, you can either
 append "cuda" to the style name (e.g. pair_style lj/cut/cuda), or use
-the "-suffix command-line switch"_Section_start.html#start_6, or use
+the "-suffix command-line switch"_Section_start.html#start_7, or use
 the "suffix"_suffix.html command.  One exception is that the
 "kspace_style pppm/cuda"_kspace_style.html command has to be requested
 explicitly. :ulb,l
@@ -484,7 +484,7 @@ explicitly. :ulb,l
 To use the USER-CUDA package with its default settings, no additional
 command is needed in your input script.  This is because when LAMMPS
 starts up, it detects if it has been built with the USER-CUDA package.
-See the "-cuda command-line switch"_Section_start.html#start_6 for
+See the "-cuda command-line switch"_Section_start.html#start_7 for
 more details. :l
 
 To change settings for the USER-CUDA package at run-time, the "package
diff --git a/doc/Section_howto.html b/doc/Section_howto.html
index d7bfb8ced2..048429d36f 100644
--- a/doc/Section_howto.html
+++ b/doc/Section_howto.html
@@ -319,7 +319,7 @@ jump in.polymer
 <P>All of the above examples work whether you are running on 1 or
 multiple processors, but assumed you are running LAMMPS on a single
 partition of processors.  LAMMPS can be run on multiple partitions via
-the "-partition" command-line switch as described in <A HREF = "Section_start.html#start_6">this
+the "-partition" command-line switch as described in <A HREF = "Section_start.html#start_7">this
 section</A> of the manual.
 </P>
 <P>In the last 2 examples, if LAMMPS were run on 3 partitions, the same
@@ -361,7 +361,7 @@ for more info on packages.
 </P>
 <P>In all these cases, you must run with one or more processors per
 replica.  The processors assigned to each replica are determined at
-run-time by using the <A HREF = "Section_start.html#start_6">-partition command-line
+run-time by using the <A HREF = "Section_start.html#start_7">-partition command-line
 switch</A> to launch LAMMPS on multiple
 partitions, which in this context are the same as replicas.  E.g.
 these commands:
@@ -370,7 +370,7 @@ these commands:
 mpirun -np 8 lmp_linux -partition 8x1 -in in.neb 
 </PRE>
 <P>would each run 8 replicas, on either 16 or 8 processors.  Note the use
-of the <A HREF = "Section_start.html#start_6">-in command-line switch</A> to specify
+of the <A HREF = "Section_start.html#start_7">-in command-line switch</A> to specify
 the input script which is required when running in multi-replica mode.
 </P>
 <P>Also note that with MPI installed on a machine (e.g. your desktop),
@@ -665,7 +665,7 @@ strain induced across grain boundaries
 
 
 
-<P><A HREF = "Section_start.html#start_4">This section</A> of the documentation
+<P><A HREF = "Section_start.html#start_5">This section</A> of the documentation
 describes how to build LAMMPS as a library.  Once this is done, you
 can interface with LAMMPS either via C++, C, Fortran, or Python (or
 any other language that supports a vanilla C-like interface).  For
@@ -1662,7 +1662,7 @@ converge and requires careful post-processing <A HREF = "#Shinoda">(Shinoda)</A>
 
 <A NAME = "howto_19"></A><H4>6.19 Library interface to LAMMPS 
 </H4>
-<P>As described in <A HREF = "Section_start.html#start_4">Section_start 4</A>, LAMMPS
+<P>As described in <A HREF = "Section_start.html#start_5">Section_start 4</A>, LAMMPS
 can be built as a library, so that it can be called by another code,
 used in a <A HREF = "Section_howto.html#howto_10">coupled manner</A> with other
 codes, or driven through a <A HREF = "Section_python.html">Python interface</A>.
@@ -1684,7 +1684,7 @@ void lammps_file(void *, char *);
 char *lammps_command(void *, char *); 
 </PRE>
 <P>The lammps_open() function is used to initialize LAMMPS, passing in a
-list of strings as if they were <A HREF = "Section_start.html#start_6">command-line
+list of strings as if they were <A HREF = "Section_start.html#start_7">command-line
 arguments</A> when LAMMPS is run in
 stand-alone mode from the command line, and a MPI communicator for
 LAMMPS to run under.  It returns a ptr to the LAMMPS object that is
diff --git a/doc/Section_howto.txt b/doc/Section_howto.txt
index 923153d816..a01d088b49 100644
--- a/doc/Section_howto.txt
+++ b/doc/Section_howto.txt
@@ -315,7 +315,7 @@ All of the above examples work whether you are running on 1 or
 multiple processors, but assumed you are running LAMMPS on a single
 partition of processors.  LAMMPS can be run on multiple partitions via
 the "-partition" command-line switch as described in "this
-section"_Section_start.html#start_6 of the manual.
+section"_Section_start.html#start_7 of the manual.
 
 In the last 2 examples, if LAMMPS were run on 3 partitions, the same
 scripts could be used if the "index" and "loop" variables were
@@ -357,7 +357,7 @@ for more info on packages.
 In all these cases, you must run with one or more processors per
 replica.  The processors assigned to each replica are determined at
 run-time by using the "-partition command-line
-switch"_Section_start.html#start_6 to launch LAMMPS on multiple
+switch"_Section_start.html#start_7 to launch LAMMPS on multiple
 partitions, which in this context are the same as replicas.  E.g.
 these commands:
 
@@ -365,7 +365,7 @@ mpirun -np 16 lmp_linux -partition 8x2 -in in.temper
 mpirun -np 8 lmp_linux -partition 8x1 -in in.neb :pre
 
 would each run 8 replicas, on either 16 or 8 processors.  Note the use
-of the "-in command-line switch"_Section_start.html#start_6 to specify
+of the "-in command-line switch"_Section_start.html#start_7 to specify
 the input script which is required when running in multi-replica mode.
 
 Also note that with MPI installed on a machine (e.g. your desktop),
@@ -659,7 +659,7 @@ strain induced across grain boundaries :l,ule
 :link(quest,http://dft.sandia.gov/Quest)
 :link(spparks,http://www.sandia.gov/~sjplimp/spparks.html)
 
-"This section"_Section_start.html#start_4 of the documentation
+"This section"_Section_start.html#start_5 of the documentation
 describes how to build LAMMPS as a library.  Once this is done, you
 can interface with LAMMPS either via C++, C, Fortran, or Python (or
 any other language that supports a vanilla C-like interface).  For
@@ -1649,7 +1649,7 @@ converge and requires careful post-processing "(Shinoda)"_#Shinoda
 
 6.19 Library interface to LAMMPS :link(howto_19),h4
 
-As described in "Section_start 4"_Section_start.html#start_4, LAMMPS
+As described in "Section_start 4"_Section_start.html#start_5, LAMMPS
 can be built as a library, so that it can be called by another code,
 used in a "coupled manner"_Section_howto.html#howto_10 with other
 codes, or driven through a "Python interface"_Section_python.html.
@@ -1672,7 +1672,7 @@ char *lammps_command(void *, char *); :pre
 
 The lammps_open() function is used to initialize LAMMPS, passing in a
 list of strings as if they were "command-line
-arguments"_Section_start.html#start_6 when LAMMPS is run in
+arguments"_Section_start.html#start_7 when LAMMPS is run in
 stand-alone mode from the command line, and a MPI communicator for
 LAMMPS to run under.  It returns a ptr to the LAMMPS object that is
 created, and which is used in subsequent library calls.  The
diff --git a/doc/Section_python.html b/doc/Section_python.html
index 5f09521204..1c3e72ecf2 100644
--- a/doc/Section_python.html
+++ b/doc/Section_python.html
@@ -34,7 +34,7 @@ packages.  It can be used to glue multiple pieces of software
 together, e.g. to run a coupled or multiscale model.  See <A HREF = "Section_howto.html#howto_10">this
 section</A> of the manual and the couple
 directory of the distribution for more ideas about coupling LAMMPS to
-other codes.  See <A HREF = "Section_start.html#start_4">Section_start 4</A> about
+other codes.  See <A HREF = "Section_start.html#start_5">Section_start 4</A> about
 how to build LAMMPS as a library, and <A HREF = "Section_howto.html#howto_19">this
 section</A> for a description of the library
 interface provided in src/library.cpp and src/library.h and how to
@@ -582,7 +582,7 @@ following steps:
 src/library.h. 
 
 <LI>Verify the new function is syntactically correct by building LAMMPS as
-a library - see <A HREF = "Section_start.html#start_4">Section_start 4</A> of the
+a library - see <A HREF = "Section_start.html#start_5">Section_start 4</A> of the
 manual. 
 
 <LI>Add a wrapper method in the Python LAMMPS module to python/lammps.py
diff --git a/doc/Section_python.txt b/doc/Section_python.txt
index 44b2a0f014..c8a046fdc7 100644
--- a/doc/Section_python.txt
+++ b/doc/Section_python.txt
@@ -31,7 +31,7 @@ packages.  It can be used to glue multiple pieces of software
 together, e.g. to run a coupled or multiscale model.  See "this
 section"_Section_howto.html#howto_10 of the manual and the couple
 directory of the distribution for more ideas about coupling LAMMPS to
-other codes.  See "Section_start 4"_Section_start.html#start_4 about
+other codes.  See "Section_start 4"_Section_start.html#start_5 about
 how to build LAMMPS as a library, and "this
 section"_Section_howto.html#howto_19 for a description of the library
 interface provided in src/library.cpp and src/library.h and how to
@@ -577,7 +577,7 @@ Add a new interface function to src/library.cpp and
 src/library.h. :ulb,l
 
 Verify the new function is syntactically correct by building LAMMPS as
-a library - see "Section_start 4"_Section_start.html#start_4 of the
+a library - see "Section_start 4"_Section_start.html#start_5 of the
 manual. :l
 
 Add a wrapper method in the Python LAMMPS module to python/lammps.py
diff --git a/doc/Section_start.html b/doc/Section_start.html
index 9945c63834..d0108c5d19 100644
--- a/doc/Section_start.html
+++ b/doc/Section_start.html
@@ -17,11 +17,12 @@ experienced users.
 2.1 <A HREF = "#start_1">What's in the LAMMPS distribution</A><BR>
 2.2 <A HREF = "#start_2">Making LAMMPS</A><BR>
 2.3 <A HREF = "#start_3">Making LAMMPS with optional packages</A><BR>
-2.4 <A HREF = "#start_4">Building LAMMPS as a library</A><BR>
-2.5 <A HREF = "#start_5">Running LAMMPS</A><BR>
-2.6 <A HREF = "#start_6">Command-line options</A><BR>
-2.7 <A HREF = "#start_7">Screen output</A><BR>
-2.8 <A HREF = "#start_8">Tips for users of previous versions</A> <BR>
+2.4 <A HREF = "#start_4">Building LAMMPS via the Make.py script</A><BR>
+2.5 <A HREF = "#start_5">Building LAMMPS as a library</A><BR>
+2.6 <A HREF = "#start_6">Running LAMMPS</A><BR>
+2.7 <A HREF = "#start_7">Command-line options</A><BR>
+2.8 <A HREF = "#start_8">Screen output</A><BR>
+2.9 <A HREF = "#start_9">Tips for users of previous versions</A> <BR>
 
 <HR>
 
@@ -56,7 +57,7 @@ then you just get a single file:
 </P>
 <PRE>lmp_windows.exe 
 </PRE>
-<P>Skip to the <A HREF = "#start_5">Running LAMMPS</A> sections for info on how to
+<P>Skip to the <A HREF = "#start_6">Running LAMMPS</A> sections for info on how to
 launch these executables on a Windows box.
 </P>
 <P>The Windows executables for serial or parallel only include certain
@@ -93,18 +94,18 @@ pre-built, etc.
 <P>Please read this section carefully.  If you are not comfortable with
 makefiles, or building codes on a Unix platform, or running an MPI job
 on your machine, please find a local expert to help you.  Many
-compiling, linking, and run problems that users have are not really
+compiling, linking, and run problems that users have are often not
 LAMMPS issues - they are peculiar to the user's system, compilers,
 libraries, etc.  Such questions are better answered by a local expert.
 </P>
 <P>If you have a build problem that you are convinced is a LAMMPS issue
 (e.g. the compiler complains about a line of LAMMPS source code), then
-please send an email to the
-<A HREF = "http://lammps.sandia.gov/authors.html">developers</A>.
+please post a question to the <A HREF = "http://lammps.sandia.gov/mail.html">LAMMPS mail
+list</A>.
 </P>
 <P>If you succeed in building LAMMPS on a new kind of machine, for which
 there isn't a similar Makefile for in the src/MAKE directory, send it
-to the developers and we'll include it in future LAMMPS releases.
+to the developers and we can include it in the LAMMPS distribution.
 </P>
 <HR>
 
@@ -425,7 +426,7 @@ above in Step 4.
 </P>
 <P>You can make LAMMPS for multiple platforms from the same src
 directory.  Each target creates its own object sub-directory called
-Obj_name where it stores the system-specific *.o files.
+Obj_target where it stores the system-specific *.o files.
 </P>
 <P>(2) Cleaning up.
 </P>
@@ -476,14 +477,15 @@ secs/timestep.
 
 <A NAME = "start_2_5"></A><B><I>Building for a Mac:</I></B> 
 
-<P>OS X is BSD Unix, so it should just work.  See the Makefile.mac file.
+<P>OS X is BSD Unix, so it should just work.  See the
+src/MAKE/Makefile.mac file.
 </P>
 <HR>
 
 <A NAME = "start_2_6"></A><B><I>Building for Windows:</I></B> 
 
 <P>The LAMMPS download page has an option to download both a serial and
-parallel pre-built Windows exeutable.  See the <A HREF = "#start_5">Running
+parallel pre-built Windows exeutable.  See the <A HREF = "#start_6">Running
 LAMMPS</A> section for instructions for running these
 executables on a Windows box.
 </P>
@@ -538,7 +540,7 @@ package.  You can also type
 </P>
 <PRE>lmp_machine -h 
 </PRE>
-<P>to run your executable with the optional <A HREF = "#start_6">-h command-line
+<P>to run your executable with the optional <A HREF = "#start_7">-h command-line
 switch</A> for "help", which will list the styles and commands
 known to your executable.
 </P>
@@ -695,7 +697,64 @@ build will likely fail.
 </P>
 <HR>
 
-<H4><A NAME = "start_4"></A>2.4 Building LAMMPS as a library 
+<H4><A NAME = "start_4"></A>2.4 Building LAMMPS via the Make.py script 
+</H4>
+<P>The src directory includes a Make.py script, written
+in Python, which can be used to automate various steps
+of the build process.
+</P>
+<P>You can run the script from the src directory by typing either:
+</P>
+<PRE>Make.py
+python Make.py 
+</PRE>
+<P>which will give you info about the tool.  For the former to work, you
+may need to edit the 1st line of the script to point to your local
+Python.  And you may need to insure the script is executable:
+</P>
+<PRE>chmod +x Make.py 
+</PRE>
+<P>The following options are supported as switches:
+</P>
+<UL><LI>-i file1 file2 ...
+<LI>-p package1 package2 ...
+<LI>-u package1 package2 ...
+<LI>-e package1 arg1 arg2 package2 ...
+<LI>-o dir
+<LI>-b machine
+<LI>-s suffix1 suffix2 ...
+<LI>-l dir
+<LI>-j N
+<LI>-h switch1 switch2 ... 
+</UL>
+<P>Help on any switch can be listed by using -h, e.g.
+</P>
+<PRE>Make.py -h -i -p 
+</PRE>
+<P>At a hi-level, these are the kinds of package management
+and build tasks that can be performed easily, using
+the Make.py tool:
+</P>
+<UL><LI>install/uninstall packages and build the associated external libs (use -p and -u and -e)
+<LI>install packages needed for one or more input scripts (use -i and -p)
+<LI>build LAMMPS, either in the src dir or new dir (use -b)
+<LI>create a new dir with only the source code needed for one or more input scripts (use -i and -o) 
+</UL>
+<P>The last bullet can be useful when you wish to build a stripped-down
+version of LAMMPS to run a specific script(s).  Or when you wish to
+move the minimal amount of files to another platform for a remote
+LAMMPS build.
+</P>
+<P>Note that using Make.py is not a substitute for insuring you have a
+valid src/MAKE/Makefile.foo for your system, or that external library
+Makefiles in any lib/* directories you use are also valid for your
+system.  But once you have done that, you can use Make.py to quickly
+include/exclude the packages and external libraries needed by your
+input scripts.
+</P>
+<HR>
+
+<H4><A NAME = "start_5"></A>2.5 Building LAMMPS as a library 
 </H4>
 <P>LAMMPS itself can be built as a library, which can then be called from
 another application or a scripting language.  See <A HREF = "Section_howto.html#howto_10">this
@@ -738,7 +797,7 @@ your needs.
 </P>
 <HR>
 
-<H4><A NAME = "start_5"></A>2.5 Running LAMMPS 
+<H4><A NAME = "start_6"></A>2.6 Running LAMMPS 
 </H4>
 <P>By default, LAMMPS runs by reading commands from stdin; e.g. lmp_linux
 < in.file.  This means you first create an input script (e.g. in.file)
@@ -848,7 +907,7 @@ more processors or setup a smaller problem.
 </P>
 <HR>
 
-<H4><A NAME = "start_6"></A>2.6 Command-line options 
+<H4><A NAME = "start_7"></A>2.7 Command-line options 
 </H4>
 <P>At run time, LAMMPS recognizes several optional command-line switches
 which may be used in any order.  Either the full word or a one-or-two
@@ -1117,7 +1176,7 @@ negative numeric value.  It is OK if the first value1 starts with a
 </P>
 <HR>
 
-<H4><A NAME = "start_7"></A>2.7 LAMMPS screen output 
+<H4><A NAME = "start_8"></A>2.8 LAMMPS screen output 
 </H4>
 <P>As LAMMPS reads an input script, it prints information to both the
 screen and a log file about significant actions it takes to setup a
@@ -1214,7 +1273,7 @@ communication, roughly 75% in the example above.
 </P>
 <HR>
 
-<H4><A NAME = "start_8"></A>2.8 Tips for users of previous LAMMPS versions 
+<H4><A NAME = "start_9"></A>2.9 Tips for users of previous LAMMPS versions 
 </H4>
 <P>The current C++ began with a complete rewrite of LAMMPS 2001, which
 was written in F90.  Features of earlier versions of LAMMPS are listed
diff --git a/doc/Section_start.txt b/doc/Section_start.txt
index 59b06386ff..882a16f9cc 100644
--- a/doc/Section_start.txt
+++ b/doc/Section_start.txt
@@ -14,11 +14,12 @@ experienced users.
 2.1 "What's in the LAMMPS distribution"_#start_1
 2.2 "Making LAMMPS"_#start_2
 2.3 "Making LAMMPS with optional packages"_#start_3
-2.4 "Building LAMMPS as a library"_#start_4
-2.5 "Running LAMMPS"_#start_5
-2.6 "Command-line options"_#start_6
-2.7 "Screen output"_#start_7
-2.8 "Tips for users of previous versions"_#start_8 :all(b)
+2.4 "Building LAMMPS via the Make.py script"_#start_4
+2.5 "Building LAMMPS as a library"_#start_5
+2.6 "Running LAMMPS"_#start_6
+2.7 "Command-line options"_#start_7
+2.8 "Screen output"_#start_8
+2.9 "Tips for users of previous versions"_#start_9 :all(b)
 
 :line
 :line
@@ -50,7 +51,7 @@ then you just get a single file:
 
 lmp_windows.exe :pre
 
-Skip to the "Running LAMMPS"_#start_5 sections for info on how to
+Skip to the "Running LAMMPS"_#start_6 sections for info on how to
 launch these executables on a Windows box.
 
 The Windows executables for serial or parallel only include certain
@@ -87,18 +88,18 @@ pre-built, etc.
 Please read this section carefully.  If you are not comfortable with
 makefiles, or building codes on a Unix platform, or running an MPI job
 on your machine, please find a local expert to help you.  Many
-compiling, linking, and run problems that users have are not really
+compiling, linking, and run problems that users have are often not
 LAMMPS issues - they are peculiar to the user's system, compilers,
 libraries, etc.  Such questions are better answered by a local expert.
 
 If you have a build problem that you are convinced is a LAMMPS issue
 (e.g. the compiler complains about a line of LAMMPS source code), then
-please send an email to the
-"developers"_http://lammps.sandia.gov/authors.html.
+please post a question to the "LAMMPS mail
+list"_http://lammps.sandia.gov/mail.html.
 
 If you succeed in building LAMMPS on a new kind of machine, for which
 there isn't a similar Makefile for in the src/MAKE directory, send it
-to the developers and we'll include it in future LAMMPS releases.
+to the developers and we can include it in the LAMMPS distribution.
 
 :line
 
@@ -419,7 +420,7 @@ above in Step 4.
 
 You can make LAMMPS for multiple platforms from the same src
 directory.  Each target creates its own object sub-directory called
-Obj_name where it stores the system-specific *.o files.
+Obj_target where it stores the system-specific *.o files.
 
 (2) Cleaning up.
 
@@ -470,7 +471,8 @@ secs/timestep.
 
 [{Building for a Mac:}] :link(start_2_5)
 
-OS X is BSD Unix, so it should just work.  See the Makefile.mac file.
+OS X is BSD Unix, so it should just work.  See the
+src/MAKE/Makefile.mac file.
 
 :line
 
@@ -478,7 +480,7 @@ OS X is BSD Unix, so it should just work.  See the Makefile.mac file.
 
 The LAMMPS download page has an option to download both a serial and
 parallel pre-built Windows exeutable.  See the "Running
-LAMMPS"_#start_5 section for instructions for running these
+LAMMPS"_#start_6 section for instructions for running these
 executables on a Windows box.
 
 If the pre-built executable doesn't have the options you want, then
@@ -533,7 +535,7 @@ package.  You can also type
 lmp_machine -h :pre
 
 to run your executable with the optional "-h command-line
-switch"_#start_6 for "help", which will list the styles and commands
+switch"_#start_7 for "help", which will list the styles and commands
 known to your executable.
 
 There are two kinds of packages in LAMMPS, standard and user packages.
@@ -689,7 +691,64 @@ build will likely fail.
 
 :line
 
-2.4 Building LAMMPS as a library :h4,link(start_4)
+2.4 Building LAMMPS via the Make.py script :h4,link(start_4)
+
+The src directory includes a Make.py script, written
+in Python, which can be used to automate various steps
+of the build process.
+
+You can run the script from the src directory by typing either:
+
+Make.py
+python Make.py :pre
+
+which will give you info about the tool.  For the former to work, you
+may need to edit the 1st line of the script to point to your local
+Python.  And you may need to insure the script is executable:
+
+chmod +x Make.py :pre
+
+The following options are supported as switches:
+
+-i file1 file2 ...
+-p package1 package2 ...
+-u package1 package2 ...
+-e package1 arg1 arg2 package2 ...
+-o dir
+-b machine
+-s suffix1 suffix2 ...
+-l dir
+-j N
+-h switch1 switch2 ... :ul
+
+Help on any switch can be listed by using -h, e.g.
+
+Make.py -h -i -p :pre
+
+At a hi-level, these are the kinds of package management
+and build tasks that can be performed easily, using
+the Make.py tool:
+
+install/uninstall packages and build the associated external libs (use -p and -u and -e)
+install packages needed for one or more input scripts (use -i and -p)
+build LAMMPS, either in the src dir or new dir (use -b)
+create a new dir with only the source code needed for one or more input scripts (use -i and -o) :ul
+
+The last bullet can be useful when you wish to build a stripped-down
+version of LAMMPS to run a specific script(s).  Or when you wish to
+move the minimal amount of files to another platform for a remote
+LAMMPS build.
+
+Note that using Make.py is not a substitute for insuring you have a
+valid src/MAKE/Makefile.foo for your system, or that external library
+Makefiles in any lib/* directories you use are also valid for your
+system.  But once you have done that, you can use Make.py to quickly
+include/exclude the packages and external libraries needed by your
+input scripts.
+
+:line
+
+2.5 Building LAMMPS as a library :h4,link(start_5)
 
 LAMMPS itself can be built as a library, which can then be called from
 another application or a scripting language.  See "this
@@ -732,7 +791,7 @@ your needs.
 
 :line
 
-2.5 Running LAMMPS :h4,link(start_5)
+2.6 Running LAMMPS :h4,link(start_6)
 
 By default, LAMMPS runs by reading commands from stdin; e.g. lmp_linux
 < in.file.  This means you first create an input script (e.g. in.file)
@@ -839,7 +898,7 @@ more processors or setup a smaller problem.
 
 :line
 
-2.6 Command-line options :h4,link(start_6)
+2.7 Command-line options :h4,link(start_7)
 
 At run time, LAMMPS recognizes several optional command-line switches
 which may be used in any order.  Either the full word or a one-or-two
@@ -1108,7 +1167,7 @@ negative numeric value.  It is OK if the first value1 starts with a
 
 :line
 
-2.7 LAMMPS screen output :h4,link(start_7)
+2.8 LAMMPS screen output :h4,link(start_8)
 
 As LAMMPS reads an input script, it prints information to both the
 screen and a log file about significant actions it takes to setup a
@@ -1205,7 +1264,7 @@ communication, roughly 75% in the example above.
 
 :line
 
-2.8 Tips for users of previous LAMMPS versions :h4,link(start_8)
+2.9 Tips for users of previous LAMMPS versions :h4,link(start_9)
 
 The current C++ began with a complete rewrite of LAMMPS 2001, which
 was written in F90.  Features of earlier versions of LAMMPS are listed
diff --git a/doc/angle_charmm.html b/doc/angle_charmm.html
index 9cc950f568..b4fccf5590 100644
--- a/doc/angle_charmm.html
+++ b/doc/angle_charmm.html
@@ -63,7 +63,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/angle_charmm.txt b/doc/angle_charmm.txt
index 78500a5387..28b9c7c73b 100644
--- a/doc/angle_charmm.txt
+++ b/doc/angle_charmm.txt
@@ -60,7 +60,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/angle_class2.html b/doc/angle_class2.html
index ddc19dd1b2..a80dabcc32 100644
--- a/doc/angle_class2.html
+++ b/doc/angle_class2.html
@@ -95,7 +95,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/angle_class2.txt b/doc/angle_class2.txt
index 36a16e8367..12ec476f26 100644
--- a/doc/angle_class2.txt
+++ b/doc/angle_class2.txt
@@ -92,7 +92,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/angle_cosine.html b/doc/angle_cosine.html
index 1c376614a1..f090e0e47a 100644
--- a/doc/angle_cosine.html
+++ b/doc/angle_cosine.html
@@ -52,7 +52,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/angle_cosine.txt b/doc/angle_cosine.txt
index 9c7b722976..22a6c6b964 100644
--- a/doc/angle_cosine.txt
+++ b/doc/angle_cosine.txt
@@ -49,7 +49,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/angle_cosine_delta.html b/doc/angle_cosine_delta.html
index dd8c9965c9..9996549363 100644
--- a/doc/angle_cosine_delta.html
+++ b/doc/angle_cosine_delta.html
@@ -57,7 +57,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/angle_cosine_delta.txt b/doc/angle_cosine_delta.txt
index 92b809b675..680c43f194 100644
--- a/doc/angle_cosine_delta.txt
+++ b/doc/angle_cosine_delta.txt
@@ -54,7 +54,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/angle_cosine_periodic.html b/doc/angle_cosine_periodic.html
index 55469c2c66..d830d3d05a 100644
--- a/doc/angle_cosine_periodic.html
+++ b/doc/angle_cosine_periodic.html
@@ -65,7 +65,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/angle_cosine_periodic.txt b/doc/angle_cosine_periodic.txt
index c5ea3563bb..3f26b9bc99 100644
--- a/doc/angle_cosine_periodic.txt
+++ b/doc/angle_cosine_periodic.txt
@@ -62,7 +62,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/angle_cosine_shift.html b/doc/angle_cosine_shift.html
index 76b1cea55e..37cf72f554 100644
--- a/doc/angle_cosine_shift.html
+++ b/doc/angle_cosine_shift.html
@@ -55,7 +55,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/angle_cosine_shift.txt b/doc/angle_cosine_shift.txt
index cd2b7fe100..6663516425 100644
--- a/doc/angle_cosine_shift.txt
+++ b/doc/angle_cosine_shift.txt
@@ -52,7 +52,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/angle_cosine_shift_exp.html b/doc/angle_cosine_shift_exp.html
index 3a30784ee5..2761a6bc9c 100644
--- a/doc/angle_cosine_shift_exp.html
+++ b/doc/angle_cosine_shift_exp.html
@@ -67,7 +67,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/angle_cosine_shift_exp.txt b/doc/angle_cosine_shift_exp.txt
index f9b2efdf91..4c7098b104 100644
--- a/doc/angle_cosine_shift_exp.txt
+++ b/doc/angle_cosine_shift_exp.txt
@@ -64,7 +64,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/angle_cosine_squared.html b/doc/angle_cosine_squared.html
index 08af469010..c35373fc42 100644
--- a/doc/angle_cosine_squared.html
+++ b/doc/angle_cosine_squared.html
@@ -57,7 +57,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/angle_cosine_squared.txt b/doc/angle_cosine_squared.txt
index ec7dbd2176..54d9ee1131 100644
--- a/doc/angle_cosine_squared.txt
+++ b/doc/angle_cosine_squared.txt
@@ -54,7 +54,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/angle_harmonic.html b/doc/angle_harmonic.html
index 4242327dbb..29886db36d 100644
--- a/doc/angle_harmonic.html
+++ b/doc/angle_harmonic.html
@@ -57,7 +57,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/angle_harmonic.txt b/doc/angle_harmonic.txt
index b0695631e3..c12239528f 100644
--- a/doc/angle_harmonic.txt
+++ b/doc/angle_harmonic.txt
@@ -54,7 +54,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/angle_table.html b/doc/angle_table.html
index 992eeeb262..390684f9a4 100644
--- a/doc/angle_table.html
+++ b/doc/angle_table.html
@@ -138,7 +138,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/angle_table.txt b/doc/angle_table.txt
index 008d0c21f2..953ebd6100 100644
--- a/doc/angle_table.txt
+++ b/doc/angle_table.txt
@@ -135,7 +135,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/bond_class2.html b/doc/bond_class2.html
index d12a5254a3..d3de624de4 100644
--- a/doc/bond_class2.html
+++ b/doc/bond_class2.html
@@ -57,7 +57,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/bond_class2.txt b/doc/bond_class2.txt
index c6a9c317ed..3d7b8f9e4c 100644
--- a/doc/bond_class2.txt
+++ b/doc/bond_class2.txt
@@ -54,7 +54,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/bond_fene.html b/doc/bond_fene.html
index 06efe05a1d..80965a31ff 100644
--- a/doc/bond_fene.html
+++ b/doc/bond_fene.html
@@ -59,7 +59,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/bond_fene.txt b/doc/bond_fene.txt
index 8ce6ae89c6..966af270fb 100644
--- a/doc/bond_fene.txt
+++ b/doc/bond_fene.txt
@@ -56,7 +56,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/bond_fene_expand.html b/doc/bond_fene_expand.html
index a68e76f04c..54fe2718e5 100644
--- a/doc/bond_fene_expand.html
+++ b/doc/bond_fene_expand.html
@@ -64,7 +64,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/bond_fene_expand.txt b/doc/bond_fene_expand.txt
index 997921cd7d..1a6c3a33ef 100644
--- a/doc/bond_fene_expand.txt
+++ b/doc/bond_fene_expand.txt
@@ -61,7 +61,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/bond_harmonic.html b/doc/bond_harmonic.html
index 3fbe7041ce..cfb1759355 100644
--- a/doc/bond_harmonic.html
+++ b/doc/bond_harmonic.html
@@ -54,7 +54,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/bond_harmonic.txt b/doc/bond_harmonic.txt
index df5bdeeffb..1b341a4b83 100644
--- a/doc/bond_harmonic.txt
+++ b/doc/bond_harmonic.txt
@@ -51,7 +51,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/bond_harmonic_shift.html b/doc/bond_harmonic_shift.html
index 0b9b3f6c18..a7ceef93a3 100644
--- a/doc/bond_harmonic_shift.html
+++ b/doc/bond_harmonic_shift.html
@@ -59,7 +59,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/bond_harmonic_shift.txt b/doc/bond_harmonic_shift.txt
index 0ca376089d..418dbe27ef 100644
--- a/doc/bond_harmonic_shift.txt
+++ b/doc/bond_harmonic_shift.txt
@@ -54,7 +54,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/bond_harmonic_shift_cut.html b/doc/bond_harmonic_shift_cut.html
index b7b8e30649..971bd59217 100644
--- a/doc/bond_harmonic_shift_cut.html
+++ b/doc/bond_harmonic_shift_cut.html
@@ -57,7 +57,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/bond_harmonic_shift_cut.txt b/doc/bond_harmonic_shift_cut.txt
index 847a455413..bd5e2466c0 100644
--- a/doc/bond_harmonic_shift_cut.txt
+++ b/doc/bond_harmonic_shift_cut.txt
@@ -54,7 +54,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/bond_morse.html b/doc/bond_morse.html
index 3c60514382..b0fdef52df 100644
--- a/doc/bond_morse.html
+++ b/doc/bond_morse.html
@@ -55,7 +55,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/bond_morse.txt b/doc/bond_morse.txt
index b399b02e93..4c8415956b 100644
--- a/doc/bond_morse.txt
+++ b/doc/bond_morse.txt
@@ -52,7 +52,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/bond_nonlinear.html b/doc/bond_nonlinear.html
index c511c2c956..8847fb709a 100644
--- a/doc/bond_nonlinear.html
+++ b/doc/bond_nonlinear.html
@@ -55,7 +55,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/bond_nonlinear.txt b/doc/bond_nonlinear.txt
index e0cd987b66..d38d8fff55 100644
--- a/doc/bond_nonlinear.txt
+++ b/doc/bond_nonlinear.txt
@@ -52,7 +52,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/bond_quartic.html b/doc/bond_quartic.html
index fc138a2989..0aa83985ab 100644
--- a/doc/bond_quartic.html
+++ b/doc/bond_quartic.html
@@ -90,7 +90,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/bond_quartic.txt b/doc/bond_quartic.txt
index b0a7ff4bc4..a58deafb9a 100644
--- a/doc/bond_quartic.txt
+++ b/doc/bond_quartic.txt
@@ -87,7 +87,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/bond_table.html b/doc/bond_table.html
index d79c4b4091..76e7fce84c 100644
--- a/doc/bond_table.html
+++ b/doc/bond_table.html
@@ -135,7 +135,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/bond_table.txt b/doc/bond_table.txt
index be9060d595..9b9d7bffbc 100644
--- a/doc/bond_table.txt
+++ b/doc/bond_table.txt
@@ -132,7 +132,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/compute_pe.html b/doc/compute_pe.html
index 75f44af57b..fa71a4c740 100644
--- a/doc/compute_pe.html
+++ b/doc/compute_pe.html
@@ -70,7 +70,7 @@ only enabled if LAMMPS was built with that package.  See the <A HREF = "Section_
 LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/compute_pe.txt b/doc/compute_pe.txt
index e09ad02b32..0920575b17 100644
--- a/doc/compute_pe.txt
+++ b/doc/compute_pe.txt
@@ -67,7 +67,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/compute_pressure.html b/doc/compute_pressure.html
index f5e729b519..e59fa51001 100644
--- a/doc/compute_pressure.html
+++ b/doc/compute_pressure.html
@@ -100,7 +100,7 @@ only enabled if LAMMPS was built with that package.  See the <A HREF = "Section_
 LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/compute_pressure.txt b/doc/compute_pressure.txt
index 0e42709481..da4dc251c3 100644
--- a/doc/compute_pressure.txt
+++ b/doc/compute_pressure.txt
@@ -97,7 +97,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/compute_temp.html b/doc/compute_temp.html
index bf7a2615c7..d669eee5e2 100644
--- a/doc/compute_temp.html
+++ b/doc/compute_temp.html
@@ -80,7 +80,7 @@ only enabled if LAMMPS was built with that package.  See the <A HREF = "Section_
 LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/compute_temp.txt b/doc/compute_temp.txt
index d31b05bd2e..d468f30ce1 100644
--- a/doc/compute_temp.txt
+++ b/doc/compute_temp.txt
@@ -77,7 +77,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/compute_temp_partial.html b/doc/compute_temp_partial.html
index c6b841c2b0..5385c5bfae 100644
--- a/doc/compute_temp_partial.html
+++ b/doc/compute_temp_partial.html
@@ -88,7 +88,7 @@ only enabled if LAMMPS was built with that package.  See the <A HREF = "Section_
 LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/compute_temp_partial.txt b/doc/compute_temp_partial.txt
index 525ab972a9..1be85c5845 100644
--- a/doc/compute_temp_partial.txt
+++ b/doc/compute_temp_partial.txt
@@ -85,7 +85,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/dihedral_charmm.html b/doc/dihedral_charmm.html
index 37f910922f..74e53f84d7 100644
--- a/doc/dihedral_charmm.html
+++ b/doc/dihedral_charmm.html
@@ -84,7 +84,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/dihedral_charmm.txt b/doc/dihedral_charmm.txt
index 7129673581..2176f83bf3 100644
--- a/doc/dihedral_charmm.txt
+++ b/doc/dihedral_charmm.txt
@@ -81,7 +81,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/dihedral_class2.html b/doc/dihedral_class2.html
index dcc8e8343b..960d968eb7 100644
--- a/doc/dihedral_class2.html
+++ b/doc/dihedral_class2.html
@@ -154,7 +154,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/dihedral_class2.txt b/doc/dihedral_class2.txt
index 391facf945..7d089d32a5 100644
--- a/doc/dihedral_class2.txt
+++ b/doc/dihedral_class2.txt
@@ -151,7 +151,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/dihedral_cosine_shift_exp.html b/doc/dihedral_cosine_shift_exp.html
index f0270280aa..f799606388 100644
--- a/doc/dihedral_cosine_shift_exp.html
+++ b/doc/dihedral_cosine_shift_exp.html
@@ -66,7 +66,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/dihedral_cosine_shift_exp.txt b/doc/dihedral_cosine_shift_exp.txt
index 1807d1c7e0..209b7f177d 100644
--- a/doc/dihedral_cosine_shift_exp.txt
+++ b/doc/dihedral_cosine_shift_exp.txt
@@ -63,7 +63,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/dihedral_harmonic.html b/doc/dihedral_harmonic.html
index ad361cfce4..d548a2a7aa 100644
--- a/doc/dihedral_harmonic.html
+++ b/doc/dihedral_harmonic.html
@@ -52,7 +52,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/dihedral_harmonic.txt b/doc/dihedral_harmonic.txt
index 8eefbc02b3..55c935b9ea 100644
--- a/doc/dihedral_harmonic.txt
+++ b/doc/dihedral_harmonic.txt
@@ -49,7 +49,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/dihedral_helix.html b/doc/dihedral_helix.html
index f95b796e10..e03a88d192 100644
--- a/doc/dihedral_helix.html
+++ b/doc/dihedral_helix.html
@@ -60,7 +60,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/dihedral_helix.txt b/doc/dihedral_helix.txt
index 7706c04c25..7034b96796 100644
--- a/doc/dihedral_helix.txt
+++ b/doc/dihedral_helix.txt
@@ -57,7 +57,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/dihedral_multi_harmonic.html b/doc/dihedral_multi_harmonic.html
index 4872c29348..5f7f06f154 100644
--- a/doc/dihedral_multi_harmonic.html
+++ b/doc/dihedral_multi_harmonic.html
@@ -54,7 +54,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/dihedral_multi_harmonic.txt b/doc/dihedral_multi_harmonic.txt
index 97b87546ad..a5706b0c7f 100644
--- a/doc/dihedral_multi_harmonic.txt
+++ b/doc/dihedral_multi_harmonic.txt
@@ -51,7 +51,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/dihedral_opls.html b/doc/dihedral_opls.html
index 6bedadc0cf..6abb123314 100644
--- a/doc/dihedral_opls.html
+++ b/doc/dihedral_opls.html
@@ -58,7 +58,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/dihedral_opls.txt b/doc/dihedral_opls.txt
index d12ced983e..28c2e4bb19 100644
--- a/doc/dihedral_opls.txt
+++ b/doc/dihedral_opls.txt
@@ -55,7 +55,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/echo.html b/doc/echo.html
index 46068aa832..15ca28365e 100644
--- a/doc/echo.html
+++ b/doc/echo.html
@@ -29,7 +29,7 @@ command to the screen and/or log file as it is read and processed.  If
 an input script has errors, it can be useful to look at echoed output
 to see the last command processed.
 </P>
-<P>The <A HREF = "Section_start.html#start_4">command-line switch</A> -echo can be used
+<P>The <A HREF = "Section_start.html#start_5">command-line switch</A> -echo can be used
 in place of this command.
 </P>
 <P><B>Restrictions:</B> none
diff --git a/doc/echo.txt b/doc/echo.txt
index eeac802ae0..8ef8ad05f8 100644
--- a/doc/echo.txt
+++ b/doc/echo.txt
@@ -26,7 +26,7 @@ command to the screen and/or log file as it is read and processed.  If
 an input script has errors, it can be useful to look at echoed output
 to see the last command processed.
 
-The "command-line switch"_Section_start.html#start_4 -echo can be used
+The "command-line switch"_Section_start.html#start_5 -echo can be used
 in place of this command.
 
 [Restrictions:] none
diff --git a/doc/fix_addforce.html b/doc/fix_addforce.html
index 60ead37035..c97756d813 100644
--- a/doc/fix_addforce.html
+++ b/doc/fix_addforce.html
@@ -121,7 +121,7 @@ only enabled if LAMMPS was built with that package.  See the <A HREF = "Section_
 LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/fix_addforce.txt b/doc/fix_addforce.txt
index bd2a159133..3ce5a5d3e0 100644
--- a/doc/fix_addforce.txt
+++ b/doc/fix_addforce.txt
@@ -111,7 +111,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/fix_aveforce.html b/doc/fix_aveforce.html
index 99052a01e2..d7c1011cec 100644
--- a/doc/fix_aveforce.html
+++ b/doc/fix_aveforce.html
@@ -87,7 +87,7 @@ only enabled if LAMMPS was built with that package.  See the <A HREF = "Section_
 LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/fix_aveforce.txt b/doc/fix_aveforce.txt
index 9759fe4550..2b8aff6618 100644
--- a/doc/fix_aveforce.txt
+++ b/doc/fix_aveforce.txt
@@ -77,7 +77,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/fix_enforce2d.html b/doc/fix_enforce2d.html
index 3bf7b56e4f..87b0546b43 100644
--- a/doc/fix_enforce2d.html
+++ b/doc/fix_enforce2d.html
@@ -44,7 +44,7 @@ only enabled if LAMMPS was built with that package.  See the <A HREF = "Section_
 LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/fix_enforce2d.txt b/doc/fix_enforce2d.txt
index 46000e9624..6a07e7ec5d 100644
--- a/doc/fix_enforce2d.txt
+++ b/doc/fix_enforce2d.txt
@@ -41,7 +41,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/fix_freeze.html b/doc/fix_freeze.html
index ea95a1fdb3..4e016d5d39 100644
--- a/doc/fix_freeze.html
+++ b/doc/fix_freeze.html
@@ -46,7 +46,7 @@ only enabled if LAMMPS was built with that package.  See the <A HREF = "Section_
 LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/fix_freeze.txt b/doc/fix_freeze.txt
index 05ad194799..f3c5098b0c 100644
--- a/doc/fix_freeze.txt
+++ b/doc/fix_freeze.txt
@@ -43,7 +43,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/fix_gravity.html b/doc/fix_gravity.html
index b26083d2d3..8f846a6f45 100644
--- a/doc/fix_gravity.html
+++ b/doc/fix_gravity.html
@@ -104,7 +104,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/fix_gravity.txt b/doc/fix_gravity.txt
index 45812ffe45..f7cc10635a 100644
--- a/doc/fix_gravity.txt
+++ b/doc/fix_gravity.txt
@@ -95,7 +95,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/fix_nh.html b/doc/fix_nh.html
index 845d2cd0a2..afe49c95c2 100644
--- a/doc/fix_nh.html
+++ b/doc/fix_nh.html
@@ -385,7 +385,7 @@ only enabled if LAMMPS was built with that package.  See the <A HREF = "Section_
 LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/fix_nh.txt b/doc/fix_nh.txt
index 749097a8cc..71d219f868 100644
--- a/doc/fix_nh.txt
+++ b/doc/fix_nh.txt
@@ -376,7 +376,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/fix_nve.html b/doc/fix_nve.html
index 2a544abd02..3132bfb294 100644
--- a/doc/fix_nve.html
+++ b/doc/fix_nve.html
@@ -45,7 +45,7 @@ only enabled if LAMMPS was built with that package.  See the <A HREF = "Section_
 LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/fix_nve.txt b/doc/fix_nve.txt
index 3558efda0d..68333011e6 100644
--- a/doc/fix_nve.txt
+++ b/doc/fix_nve.txt
@@ -42,7 +42,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/fix_nve_sphere.html b/doc/fix_nve_sphere.html
index 2702bcbfb3..0134e8ff68 100644
--- a/doc/fix_nve_sphere.html
+++ b/doc/fix_nve_sphere.html
@@ -66,7 +66,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/fix_nve_sphere.txt b/doc/fix_nve_sphere.txt
index ebaeabd40b..2577be82ad 100755
--- a/doc/fix_nve_sphere.txt
+++ b/doc/fix_nve_sphere.txt
@@ -58,7 +58,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/fix_qeq_comb.html b/doc/fix_qeq_comb.html
index 984b6bd685..91e8fb4b0c 100644
--- a/doc/fix_qeq_comb.html
+++ b/doc/fix_qeq_comb.html
@@ -83,7 +83,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/fix_qeq_comb.txt b/doc/fix_qeq_comb.txt
index 5cce65180b..01f94c96ff 100644
--- a/doc/fix_qeq_comb.txt
+++ b/doc/fix_qeq_comb.txt
@@ -73,7 +73,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/fix_setforce.html b/doc/fix_setforce.html
index 2ac1db341d..da6ffb5d3f 100644
--- a/doc/fix_setforce.html
+++ b/doc/fix_setforce.html
@@ -88,7 +88,7 @@ only enabled if LAMMPS was built with that package.  See the <A HREF = "Section_
 LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/fix_setforce.txt b/doc/fix_setforce.txt
index c215e3ed25..784d1eb7e8 100644
--- a/doc/fix_setforce.txt
+++ b/doc/fix_setforce.txt
@@ -78,7 +78,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/fix_shake.html b/doc/fix_shake.html
index a83ee5a3eb..29b130866f 100644
--- a/doc/fix_shake.html
+++ b/doc/fix_shake.html
@@ -113,7 +113,7 @@ only enabled if LAMMPS was built with that package.  See the <A HREF = "Section_
 LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/fix_shake.txt b/doc/fix_shake.txt
index e68f04cebf..1efa2dac4b 100644
--- a/doc/fix_shake.txt
+++ b/doc/fix_shake.txt
@@ -102,7 +102,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/fix_temp_berendsen.html b/doc/fix_temp_berendsen.html
index 494311d17a..49d7e7d408 100644
--- a/doc/fix_temp_berendsen.html
+++ b/doc/fix_temp_berendsen.html
@@ -109,7 +109,7 @@ only enabled if LAMMPS was built with that package.  See the <A HREF = "Section_
 LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/fix_temp_berendsen.txt b/doc/fix_temp_berendsen.txt
index 4ac7e2b6e4..5a4428923f 100644
--- a/doc/fix_temp_berendsen.txt
+++ b/doc/fix_temp_berendsen.txt
@@ -106,7 +106,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/fix_temp_rescale.html b/doc/fix_temp_rescale.html
index 34fd4ea235..9a800303d5 100644
--- a/doc/fix_temp_rescale.html
+++ b/doc/fix_temp_rescale.html
@@ -118,7 +118,7 @@ only enabled if LAMMPS was built with that package.  See the <A HREF = "Section_
 LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/fix_temp_rescale.txt b/doc/fix_temp_rescale.txt
index 0215f837f4..3d7b7aec13 100644
--- a/doc/fix_temp_rescale.txt
+++ b/doc/fix_temp_rescale.txt
@@ -114,7 +114,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/fix_viscous.html b/doc/fix_viscous.html
index 94a9c6980a..2140a7e8cc 100644
--- a/doc/fix_viscous.html
+++ b/doc/fix_viscous.html
@@ -96,7 +96,7 @@ only enabled if LAMMPS was built with that package.  See the <A HREF = "Section_
 LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/fix_viscous.txt b/doc/fix_viscous.txt
index 2e1b87837b..355a099fad 100644
--- a/doc/fix_viscous.txt
+++ b/doc/fix_viscous.txt
@@ -88,7 +88,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/improper_class2.html b/doc/improper_class2.html
index 03cccdf6a3..73cf13993b 100644
--- a/doc/improper_class2.html
+++ b/doc/improper_class2.html
@@ -100,7 +100,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/improper_class2.txt b/doc/improper_class2.txt
index f6d66b9c7f..dbb0a3d8e7 100644
--- a/doc/improper_class2.txt
+++ b/doc/improper_class2.txt
@@ -97,7 +97,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/improper_cvff.html b/doc/improper_cvff.html
index 211b33f1d5..0201678bd3 100644
--- a/doc/improper_cvff.html
+++ b/doc/improper_cvff.html
@@ -70,7 +70,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/improper_cvff.txt b/doc/improper_cvff.txt
index 94736d3cd2..0a0783b533 100644
--- a/doc/improper_cvff.txt
+++ b/doc/improper_cvff.txt
@@ -67,7 +67,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/improper_harmonic.html b/doc/improper_harmonic.html
index 075a1c1416..140f7228c9 100644
--- a/doc/improper_harmonic.html
+++ b/doc/improper_harmonic.html
@@ -70,7 +70,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/improper_harmonic.txt b/doc/improper_harmonic.txt
index 9a03129909..6f67b47017 100644
--- a/doc/improper_harmonic.txt
+++ b/doc/improper_harmonic.txt
@@ -67,7 +67,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/improper_umbrella.html b/doc/improper_umbrella.html
index 8c74bad45c..149d5c9a04 100644
--- a/doc/improper_umbrella.html
+++ b/doc/improper_umbrella.html
@@ -65,7 +65,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/improper_umbrella.txt b/doc/improper_umbrella.txt
index d5e178ff94..478003bb8e 100644
--- a/doc/improper_umbrella.txt
+++ b/doc/improper_umbrella.txt
@@ -62,7 +62,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/jump.html b/doc/jump.html
index 2d175a6a79..8bd2fdaaf7 100644
--- a/doc/jump.html
+++ b/doc/jump.html
@@ -43,8 +43,8 @@ e.g.
 </PRE>
 <P>since the SELF option invokes the C-library rewind() call, which may
 not be supported for stdin on some systems.  This can be worked around
-by using the <A HREF = "Section_start.html#start_6">-in command-line argument</A> or
-the <A HREF = "Section_start.html#start_6">-var command-line argument</A> to pass
+by using the <A HREF = "Section_start.html#start_7">-in command-line argument</A> or
+the <A HREF = "Section_start.html#start_7">-var command-line argument</A> to pass
 the script name as a variable to the input script In the latter case,
 the "fname" <A HREF = "variable.html">variable</A> could be used in place of SELF.
 E.g.
diff --git a/doc/jump.txt b/doc/jump.txt
index 83f40af7e9..d3069be3a5 100644
--- a/doc/jump.txt
+++ b/doc/jump.txt
@@ -40,8 +40,8 @@ lmp_g++ < in.script :pre
 
 since the SELF option invokes the C-library rewind() call, which may
 not be supported for stdin on some systems.  This can be worked around
-by using the "-in command-line argument"_Section_start.html#start_6 or
-the "-var command-line argument"_Section_start.html#start_6 to pass
+by using the "-in command-line argument"_Section_start.html#start_7 or
+the "-var command-line argument"_Section_start.html#start_7 to pass
 the script name as a variable to the input script In the latter case,
 the "fname" "variable"_variable.html could be used in place of SELF.
 E.g.
diff --git a/doc/log.html b/doc/log.html
index 10db3c0b4c..28cc762cac 100644
--- a/doc/log.html
+++ b/doc/log.html
@@ -33,7 +33,7 @@ the same log file.
 </P>
 <P>The file "log.lammps" is the default log file for a LAMMPS run.  The
 name of the initial log file can also be set by the command-line
-switch -log.  See <A HREF = "Section_start.html#start_6">Section_start 6</A> for
+switch -log.  See <A HREF = "Section_start.html#start_7">Section_start 6</A> for
 details.
 </P>
 <P><B>Restrictions:</B> none
diff --git a/doc/log.txt b/doc/log.txt
index bfd4462c47..94678f902d 100644
--- a/doc/log.txt
+++ b/doc/log.txt
@@ -30,7 +30,7 @@ the same log file.
 
 The file "log.lammps" is the default log file for a LAMMPS run.  The
 name of the initial log file can also be set by the command-line
-switch -log.  See "Section_start 6"_Section_start.html#start_6 for
+switch -log.  See "Section_start 6"_Section_start.html#start_7 for
 details.
 
 [Restrictions:] none
diff --git a/doc/neb.html b/doc/neb.html
index 6549538085..06a82d3180 100644
--- a/doc/neb.html
+++ b/doc/neb.html
@@ -42,7 +42,7 @@ follows the discussion in these 3 papers: <A HREF = "#Henkelman1">(Henkelman1)</
 </P>
 <P>Each replica runs on a partition of one or more processors.  Processor
 partitions are defined at run-time using the -partition command-line
-switch; see <A HREF = "Section_start.html#start_6">Section_start 6</A> of the
+switch; see <A HREF = "Section_start.html#start_7">Section_start 6</A> of the
 manual.  Note that if you have MPI installed, you can run a
 multi-replica simulation with more replicas (partitions) than you have
 physical processors, e.g you can run a 10-replica simulation on one or
diff --git a/doc/neb.txt b/doc/neb.txt
index 78c3a927ba..aa630f82bb 100644
--- a/doc/neb.txt
+++ b/doc/neb.txt
@@ -39,7 +39,7 @@ follows the discussion in these 3 papers: "(Henkelman1)"_#Henkelman1,
 
 Each replica runs on a partition of one or more processors.  Processor
 partitions are defined at run-time using the -partition command-line
-switch; see "Section_start 6"_Section_start.html#start_6 of the
+switch; see "Section_start 6"_Section_start.html#start_7 of the
 manual.  Note that if you have MPI installed, you can run a
 multi-replica simulation with more replicas (partitions) than you have
 physical processors, e.g you can run a 10-replica simulation on one or
diff --git a/doc/neighbor.html b/doc/neighbor.html
index 0a69e18d7e..6efb251466 100644
--- a/doc/neighbor.html
+++ b/doc/neighbor.html
@@ -68,7 +68,7 @@ stored in the list.
 </P>
 <P>When a run is finished, counts of the number of neighbors stored in
 the pairwise list and the number of times neighbor lists were built
-are printed to the screen and log file.  See <A HREF = "Section_start.html#start_7">this
+are printed to the screen and log file.  See <A HREF = "Section_start.html#start_8">this
 section</A> for details.
 </P>
 <P><B>Restrictions:</B> none
diff --git a/doc/neighbor.txt b/doc/neighbor.txt
index 199bd91430..e30fb41d0a 100644
--- a/doc/neighbor.txt
+++ b/doc/neighbor.txt
@@ -66,7 +66,7 @@ stored in the list.
 When a run is finished, counts of the number of neighbors stored in
 the pairwise list and the number of times neighbor lists were built
 are printed to the screen and log file.  See "this
-section"_Section_start.html#start_7 for details.
+section"_Section_start.html#start_8 for details.
 
 [Restrictions:] none
 
diff --git a/doc/next.html b/doc/next.html
index 14647c66fc..31be8e0f5f 100644
--- a/doc/next.html
+++ b/doc/next.html
@@ -60,7 +60,7 @@ the next command is used with <I>universe</I>- or <I>uloop</I>-style variables,
 the next value is assigned to whichever processor partition executes
 the command first.  All processors in the partition are assigned the
 same value.  Running LAMMPS on multiple partitions of processors via
-the "-partition" command-line switch is described in <A HREF = "Section_start.html#start_6">this
+the "-partition" command-line switch is described in <A HREF = "Section_start.html#start_7">this
 section</A> of the manual.  <I>Universe</I>- and
 <I>uloop</I>-style variables are incremented using the files
 "tmp.lammps.variable" and "tmp.lammps.variable.lock" which you will
diff --git a/doc/next.txt b/doc/next.txt
index fd509e1b0b..f0be628871 100644
--- a/doc/next.txt
+++ b/doc/next.txt
@@ -58,7 +58,7 @@ the next value is assigned to whichever processor partition executes
 the command first.  All processors in the partition are assigned the
 same value.  Running LAMMPS on multiple partitions of processors via
 the "-partition" command-line switch is described in "this
-section"_Section_start.html#start_6 of the manual.  {Universe}- and
+section"_Section_start.html#start_7 of the manual.  {Universe}- and
 {uloop}-style variables are incremented using the files
 "tmp.lammps.variable" and "tmp.lammps.variable.lock" which you will
 see in your directory during such a LAMMPS run.
diff --git a/doc/package.html b/doc/package.html
index 124ae47329..f31f8db721 100644
--- a/doc/package.html
+++ b/doc/package.html
@@ -65,7 +65,7 @@ following packages use it: GPU, USER-CUDA, and USER-OMP.
 </P>
 <P>To use the accelerated GPU and USER-OMP styles, the use of the package
 command is required.  However, as described in the "Defaults" section
-below, if you use the "-sf gpu" or "-sf omp" <A HREF = "Section_start.html#start_6">command-line
+below, if you use the "-sf gpu" or "-sf omp" <A HREF = "Section_start.html#start_7">command-line
 options</A> to enable use of these styles,
 then default package settings are enabled.  In that case you only need
 to use the package command if you want to change the defaults.
@@ -250,17 +250,17 @@ LAMMPS</A> section for more info.
 </P>
 <P><B>Default:</B>
 </P>
-<P>If the "-sf gpu" <A HREF = "Section_start.html#start_6">command-line switch</A> is
+<P>If the "-sf gpu" <A HREF = "Section_start.html#start_7">command-line switch</A> is
 used then it is as if the command "package gpu force/neigh 0 0 1" were
 invoked, to specify default settings for the GPU package.  If the
 command-line switch is not used, then no defaults are set, and you
 must specify the appropriate package command in your input script.
 </P>
 <P>The default settings for the USER CUDA package are "package cuda gpu
-2".  This is the case whether the "-sf cuda" <A HREF = "Section_start.html#start_6">command-line
+2".  This is the case whether the "-sf cuda" <A HREF = "Section_start.html#start_7">command-line
 switch</A> is used or not.
 </P>
-<P>If the "-sf omp" <A HREF = "Section_start.html#start_6">command-line switch</A> is
+<P>If the "-sf omp" <A HREF = "Section_start.html#start_7">command-line switch</A> is
 used then it is as if the command "package omp *" were invoked, to
 specify default settings for the USER-OMP package.  If the
 command-line switch is not used, then no defaults are set, and you
diff --git a/doc/package.txt b/doc/package.txt
index c8b30217a4..c9b6d9681f 100644
--- a/doc/package.txt
+++ b/doc/package.txt
@@ -60,7 +60,7 @@ following packages use it: GPU, USER-CUDA, and USER-OMP.
 To use the accelerated GPU and USER-OMP styles, the use of the package
 command is required.  However, as described in the "Defaults" section
 below, if you use the "-sf gpu" or "-sf omp" "command-line
-options"_Section_start.html#start_6 to enable use of these styles,
+options"_Section_start.html#start_7 to enable use of these styles,
 then default package settings are enabled.  In that case you only need
 to use the package command if you want to change the defaults.
 
@@ -244,7 +244,7 @@ LAMMPS"_Section_start.html#start_3 section for more info.
 
 [Default:]
 
-If the "-sf gpu" "command-line switch"_Section_start.html#start_6 is
+If the "-sf gpu" "command-line switch"_Section_start.html#start_7 is
 used then it is as if the command "package gpu force/neigh 0 0 1" were
 invoked, to specify default settings for the GPU package.  If the
 command-line switch is not used, then no defaults are set, and you
@@ -252,9 +252,9 @@ must specify the appropriate package command in your input script.
 
 The default settings for the USER CUDA package are "package cuda gpu
 2".  This is the case whether the "-sf cuda" "command-line
-switch"_Section_start.html#start_6 is used or not.
+switch"_Section_start.html#start_7 is used or not.
 
-If the "-sf omp" "command-line switch"_Section_start.html#start_6 is
+If the "-sf omp" "command-line switch"_Section_start.html#start_7 is
 used then it is as if the command "package omp *" were invoked, to
 specify default settings for the USER-OMP package.  If the
 command-line switch is not used, then no defaults are set, and you
diff --git a/doc/pair_adp.html b/doc/pair_adp.html
index 230d469cd1..a475fee025 100644
--- a/doc/pair_adp.html
+++ b/doc/pair_adp.html
@@ -133,7 +133,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_adp.txt b/doc/pair_adp.txt
index 4909d738b4..4ddbfdac51 100644
--- a/doc/pair_adp.txt
+++ b/doc/pair_adp.txt
@@ -130,7 +130,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_airebo.html b/doc/pair_airebo.html
index 8bc7126e04..42502af09d 100644
--- a/doc/pair_airebo.html
+++ b/doc/pair_airebo.html
@@ -137,7 +137,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_airebo.txt b/doc/pair_airebo.txt
index 8239d42a36..0d76804a05 100644
--- a/doc/pair_airebo.txt
+++ b/doc/pair_airebo.txt
@@ -132,7 +132,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_born.html b/doc/pair_born.html
index 3d7655c752..084b37bf81 100644
--- a/doc/pair_born.html
+++ b/doc/pair_born.html
@@ -127,7 +127,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_born.txt b/doc/pair_born.txt
index 35bc4fe052..105237289e 100644
--- a/doc/pair_born.txt
+++ b/doc/pair_born.txt
@@ -119,7 +119,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_brownian.html b/doc/pair_brownian.html
index 2430a43343..5028c4625a 100644
--- a/doc/pair_brownian.html
+++ b/doc/pair_brownian.html
@@ -83,7 +83,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_brownian.txt b/doc/pair_brownian.txt
index 2919ce7001..9c828a2b37 100644
--- a/doc/pair_brownian.txt
+++ b/doc/pair_brownian.txt
@@ -78,7 +78,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "this section"_Section_accelerate.html of the manual for more
diff --git a/doc/pair_buck.html b/doc/pair_buck.html
index 03f068b096..bc237e4033 100644
--- a/doc/pair_buck.html
+++ b/doc/pair_buck.html
@@ -135,7 +135,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_buck.txt b/doc/pair_buck.txt
index a89062799d..c0de764202 100644
--- a/doc/pair_buck.txt
+++ b/doc/pair_buck.txt
@@ -121,7 +121,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_buck_coul.html b/doc/pair_buck_coul.html
index 863850dbc3..5bf1c92923 100644
--- a/doc/pair_buck_coul.html
+++ b/doc/pair_buck_coul.html
@@ -118,7 +118,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_buck_coul.txt b/doc/pair_buck_coul.txt
index e6eaf14ba4..5e100e7da2 100644
--- a/doc/pair_buck_coul.txt
+++ b/doc/pair_buck_coul.txt
@@ -110,7 +110,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_charmm.html b/doc/pair_charmm.html
index 43fb29de69..d586bb4006 100644
--- a/doc/pair_charmm.html
+++ b/doc/pair_charmm.html
@@ -144,7 +144,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_charmm.txt b/doc/pair_charmm.txt
index bafeed18d6..fa46832205 100644
--- a/doc/pair_charmm.txt
+++ b/doc/pair_charmm.txt
@@ -130,7 +130,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_class2.html b/doc/pair_class2.html
index 17192d1f4d..1f73c4daaf 100644
--- a/doc/pair_class2.html
+++ b/doc/pair_class2.html
@@ -129,7 +129,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_class2.txt b/doc/pair_class2.txt
index 0a0f7a48f8..cc80ed5e68 100644
--- a/doc/pair_class2.txt
+++ b/doc/pair_class2.txt
@@ -115,7 +115,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_colloid.html b/doc/pair_colloid.html
index b8ebae042c..765018a378 100644
--- a/doc/pair_colloid.html
+++ b/doc/pair_colloid.html
@@ -140,7 +140,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_colloid.txt b/doc/pair_colloid.txt
index b68f8d9d6f..1feea7cf6c 100644
--- a/doc/pair_colloid.txt
+++ b/doc/pair_colloid.txt
@@ -137,7 +137,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_comb.html b/doc/pair_comb.html
index 62c64c55ee..1ad0bce3b5 100644
--- a/doc/pair_comb.html
+++ b/doc/pair_comb.html
@@ -182,7 +182,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_comb.txt b/doc/pair_comb.txt
index 2ea8f2fc73..2610141a78 100644
--- a/doc/pair_comb.txt
+++ b/doc/pair_comb.txt
@@ -179,7 +179,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_coul.html b/doc/pair_coul.html
index 460ba19d52..c5f2813709 100644
--- a/doc/pair_coul.html
+++ b/doc/pair_coul.html
@@ -138,7 +138,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_coul.txt b/doc/pair_coul.txt
index 0d2333589a..3fc4d75018 100644
--- a/doc/pair_coul.txt
+++ b/doc/pair_coul.txt
@@ -128,7 +128,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_dipole.html b/doc/pair_dipole.html
index 3f1a5ce949..b1965f692e 100644
--- a/doc/pair_dipole.html
+++ b/doc/pair_dipole.html
@@ -137,7 +137,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_dipole.txt b/doc/pair_dipole.txt
index f41ceb434d..b9f8b24983 100755
--- a/doc/pair_dipole.txt
+++ b/doc/pair_dipole.txt
@@ -130,7 +130,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_dpd.html b/doc/pair_dpd.html
index b6c46cce02..18ec03bbbf 100644
--- a/doc/pair_dpd.html
+++ b/doc/pair_dpd.html
@@ -111,7 +111,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_dpd.txt b/doc/pair_dpd.txt
index 0638e753e8..d2f8b38572 100644
--- a/doc/pair_dpd.txt
+++ b/doc/pair_dpd.txt
@@ -106,7 +106,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_eam.html b/doc/pair_eam.html
index 929485b8cd..a525e32cb2 100644
--- a/doc/pair_eam.html
+++ b/doc/pair_eam.html
@@ -392,7 +392,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_eam.txt b/doc/pair_eam.txt
index c865155061..a9f157b082 100644
--- a/doc/pair_eam.txt
+++ b/doc/pair_eam.txt
@@ -375,7 +375,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accerlate"_Section_accelerate.html of the manual for more
diff --git a/doc/pair_edip.html b/doc/pair_edip.html
index fb65ffbda5..0df634cd24 100644
--- a/doc/pair_edip.html
+++ b/doc/pair_edip.html
@@ -115,7 +115,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_edip.txt b/doc/pair_edip.txt
index 5fcf6e5d6c..595070b274 100644
--- a/doc/pair_edip.txt
+++ b/doc/pair_edip.txt
@@ -112,7 +112,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_eim.html b/doc/pair_eim.html
index 680353a8c2..08eb4938a6 100644
--- a/doc/pair_eim.html
+++ b/doc/pair_eim.html
@@ -147,7 +147,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_eim.txt b/doc/pair_eim.txt
index 0c2b5439e3..4590ba85d0 100644
--- a/doc/pair_eim.txt
+++ b/doc/pair_eim.txt
@@ -144,7 +144,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_gauss.html b/doc/pair_gauss.html
index d29ba2e5c2..a21e97898d 100644
--- a/doc/pair_gauss.html
+++ b/doc/pair_gauss.html
@@ -96,8 +96,8 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
-switch</A> when you invoke LAMMPS, or you can
+by including their suffix, or you can use the "-suffix command-line
+switch7_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
 <P>See <A HREF = "Section_accelerate.html">Section_accelerate</A> of the manual for
diff --git a/doc/pair_gauss.txt b/doc/pair_gauss.txt
index 62092ce383..a783380819 100644
--- a/doc/pair_gauss.txt
+++ b/doc/pair_gauss.txt
@@ -92,7 +92,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch7_Section_start.html#start_6 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_gayberne.html b/doc/pair_gayberne.html
index de5b34c3b2..84241fcd9d 100644
--- a/doc/pair_gayberne.html
+++ b/doc/pair_gayberne.html
@@ -147,7 +147,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_gayberne.txt b/doc/pair_gayberne.txt
index a83b4f43c0..ed969b1af8 100755
--- a/doc/pair_gayberne.txt
+++ b/doc/pair_gayberne.txt
@@ -143,7 +143,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_gran.html b/doc/pair_gran.html
index d9862cbe69..cef4ccafab 100644
--- a/doc/pair_gran.html
+++ b/doc/pair_gran.html
@@ -189,7 +189,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_gran.txt b/doc/pair_gran.txt
index d84b2ae48c..e15a6aca5f 100644
--- a/doc/pair_gran.txt
+++ b/doc/pair_gran.txt
@@ -176,7 +176,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_gromacs.html b/doc/pair_gromacs.html
index 3f84634b53..c2ffe88497 100644
--- a/doc/pair_gromacs.html
+++ b/doc/pair_gromacs.html
@@ -109,7 +109,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_gromacs.txt b/doc/pair_gromacs.txt
index d276615d19..361e43744b 100644
--- a/doc/pair_gromacs.txt
+++ b/doc/pair_gromacs.txt
@@ -101,7 +101,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_hbond_dreiding.html b/doc/pair_hbond_dreiding.html
index 32c2e16e1b..3dbf6479ee 100644
--- a/doc/pair_hbond_dreiding.html
+++ b/doc/pair_hbond_dreiding.html
@@ -165,7 +165,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_hbond_dreiding.txt b/doc/pair_hbond_dreiding.txt
index 1b0361fc19..1c41da09ce 100644
--- a/doc/pair_hbond_dreiding.txt
+++ b/doc/pair_hbond_dreiding.txt
@@ -160,7 +160,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_hybrid.html b/doc/pair_hybrid.html
index 7c729a7275..98995090f4 100644
--- a/doc/pair_hybrid.html
+++ b/doc/pair_hybrid.html
@@ -234,7 +234,7 @@ LAMMPS was built with those packages.  See the
 <A HREF = "Section_start.html#start_3">Making LAMMPS</A> section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_hybrid.txt b/doc/pair_hybrid.txt
index 2828fc21b0..dceb18e884 100644
--- a/doc/pair_hybrid.txt
+++ b/doc/pair_hybrid.txt
@@ -229,7 +229,7 @@ LAMMPS was built with those packages.  See the
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_line_lj.html b/doc/pair_line_lj.html
index 41d106fec3..51ed7fa705 100644
--- a/doc/pair_line_lj.html
+++ b/doc/pair_line_lj.html
@@ -94,7 +94,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_line_lj.txt b/doc/pair_line_lj.txt
index cfa4ffe794..3fe83831e5 100644
--- a/doc/pair_line_lj.txt
+++ b/doc/pair_line_lj.txt
@@ -91,7 +91,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_lj.html b/doc/pair_lj.html
index 1c480cf256..f77df8c47d 100644
--- a/doc/pair_lj.html
+++ b/doc/pair_lj.html
@@ -210,7 +210,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_lj.txt b/doc/pair_lj.txt
index 81fc804afd..7b76d385f6 100644
--- a/doc/pair_lj.txt
+++ b/doc/pair_lj.txt
@@ -187,7 +187,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_lj96.html b/doc/pair_lj96.html
index 940459abb4..1689812c75 100644
--- a/doc/pair_lj96.html
+++ b/doc/pair_lj96.html
@@ -66,7 +66,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_lj96.txt b/doc/pair_lj96.txt
index 2a6280a35f..b6a20ce23c 100644
--- a/doc/pair_lj96.txt
+++ b/doc/pair_lj96.txt
@@ -61,7 +61,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_lj_coul.html b/doc/pair_lj_coul.html
index eae07c2a2e..2c1ff3f9bc 100644
--- a/doc/pair_lj_coul.html
+++ b/doc/pair_lj_coul.html
@@ -120,7 +120,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_lj_coul.txt b/doc/pair_lj_coul.txt
index 2a3ebdc97c..7e8344fe0e 100644
--- a/doc/pair_lj_coul.txt
+++ b/doc/pair_lj_coul.txt
@@ -112,7 +112,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_lj_cubic.html b/doc/pair_lj_cubic.html
index 9bd2996a92..06296cd5f2 100644
--- a/doc/pair_lj_cubic.html
+++ b/doc/pair_lj_cubic.html
@@ -77,7 +77,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_lj_cubic.txt b/doc/pair_lj_cubic.txt
index f1f17c9f9d..4183b4576d 100644
--- a/doc/pair_lj_cubic.txt
+++ b/doc/pair_lj_cubic.txt
@@ -74,7 +74,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_lj_expand.html b/doc/pair_lj_expand.html
index 91b3130a69..f85b51cb99 100644
--- a/doc/pair_lj_expand.html
+++ b/doc/pair_lj_expand.html
@@ -70,7 +70,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_lj_expand.txt b/doc/pair_lj_expand.txt
index d2be5a81c1..7abaa01ed9 100644
--- a/doc/pair_lj_expand.txt
+++ b/doc/pair_lj_expand.txt
@@ -65,7 +65,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_lj_sf.html b/doc/pair_lj_sf.html
index 6da69b3e68..5f3354eab7 100644
--- a/doc/pair_lj_sf.html
+++ b/doc/pair_lj_sf.html
@@ -61,7 +61,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_lj_sf.txt b/doc/pair_lj_sf.txt
index be0d94f5af..d9e54e3781 100644
--- a/doc/pair_lj_sf.txt
+++ b/doc/pair_lj_sf.txt
@@ -58,7 +58,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_lj_smooth.html b/doc/pair_lj_smooth.html
index 9cefda53eb..ae42dd4041 100644
--- a/doc/pair_lj_smooth.html
+++ b/doc/pair_lj_smooth.html
@@ -78,7 +78,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_lj_smooth.txt b/doc/pair_lj_smooth.txt
index 65dd323a3c..d040168e1d 100644
--- a/doc/pair_lj_smooth.txt
+++ b/doc/pair_lj_smooth.txt
@@ -74,7 +74,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_lj_smooth_linear.html b/doc/pair_lj_smooth_linear.html
index 48de111cac..949f4f1378 100644
--- a/doc/pair_lj_smooth_linear.html
+++ b/doc/pair_lj_smooth_linear.html
@@ -63,7 +63,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_lj_smooth_linear.txt b/doc/pair_lj_smooth_linear.txt
index 4b3db57607..d2e67cf59a 100644
--- a/doc/pair_lj_smooth_linear.txt
+++ b/doc/pair_lj_smooth_linear.txt
@@ -60,7 +60,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_lubricate.html b/doc/pair_lubricate.html
index 95ef4e6c29..31d85ec902 100644
--- a/doc/pair_lubricate.html
+++ b/doc/pair_lubricate.html
@@ -138,7 +138,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_lubricate.txt b/doc/pair_lubricate.txt
index 70385effd7..2a195a7ae5 100644
--- a/doc/pair_lubricate.txt
+++ b/doc/pair_lubricate.txt
@@ -133,7 +133,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "this section"_Section_accelerate.html of the manual for more
diff --git a/doc/pair_morse.html b/doc/pair_morse.html
index 42ab9eb6d5..3c2d62dcab 100644
--- a/doc/pair_morse.html
+++ b/doc/pair_morse.html
@@ -68,7 +68,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_morse.txt b/doc/pair_morse.txt
index 5c8293e6bf..c5d3ede1c5 100644
--- a/doc/pair_morse.txt
+++ b/doc/pair_morse.txt
@@ -62,7 +62,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_peri.html b/doc/pair_peri.html
index c5871b9820..2a25818c3c 100644
--- a/doc/pair_peri.html
+++ b/doc/pair_peri.html
@@ -96,7 +96,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_peri.txt b/doc/pair_peri.txt
index acaea14e3d..e9ddd4caa9 100644
--- a/doc/pair_peri.txt
+++ b/doc/pair_peri.txt
@@ -91,7 +91,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_resquared.html b/doc/pair_resquared.html
index ebca4fe033..2cd51731b4 100644
--- a/doc/pair_resquared.html
+++ b/doc/pair_resquared.html
@@ -160,7 +160,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_resquared.txt b/doc/pair_resquared.txt
index d364346f7b..1a4c76650d 100755
--- a/doc/pair_resquared.txt
+++ b/doc/pair_resquared.txt
@@ -156,7 +156,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_sdk.html b/doc/pair_sdk.html
index c2f9a76c31..361f83307b 100644
--- a/doc/pair_sdk.html
+++ b/doc/pair_sdk.html
@@ -103,7 +103,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_sdk.txt b/doc/pair_sdk.txt
index 536be2a6e8..cd992297cd 100644
--- a/doc/pair_sdk.txt
+++ b/doc/pair_sdk.txt
@@ -95,7 +95,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_soft.html b/doc/pair_soft.html
index 0376c6fe5b..8d3b45cc09 100644
--- a/doc/pair_soft.html
+++ b/doc/pair_soft.html
@@ -95,7 +95,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_soft.txt b/doc/pair_soft.txt
index d95c0d23c1..3acb16d602 100644
--- a/doc/pair_soft.txt
+++ b/doc/pair_soft.txt
@@ -92,7 +92,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_sw.html b/doc/pair_sw.html
index 67165ac0b1..778a01e096 100644
--- a/doc/pair_sw.html
+++ b/doc/pair_sw.html
@@ -154,7 +154,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_sw.txt b/doc/pair_sw.txt
index b6a8113b7f..5712f81de8 100644
--- a/doc/pair_sw.txt
+++ b/doc/pair_sw.txt
@@ -150,7 +150,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_table.html b/doc/pair_table.html
index cc1f4702b1..5ef2668970 100644
--- a/doc/pair_table.html
+++ b/doc/pair_table.html
@@ -193,7 +193,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_table.txt b/doc/pair_table.txt
index f5629a0fb8..f2220d5c5f 100644
--- a/doc/pair_table.txt
+++ b/doc/pair_table.txt
@@ -189,7 +189,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_tersoff.html b/doc/pair_tersoff.html
index ef109da047..50fefb95e4 100644
--- a/doc/pair_tersoff.html
+++ b/doc/pair_tersoff.html
@@ -191,7 +191,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_tersoff.txt b/doc/pair_tersoff.txt
index 58a88abaaf..cb83f752c3 100644
--- a/doc/pair_tersoff.txt
+++ b/doc/pair_tersoff.txt
@@ -185,7 +185,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_tersoff_zbl.html b/doc/pair_tersoff_zbl.html
index 202601f7a4..9aa63e8be0 100644
--- a/doc/pair_tersoff_zbl.html
+++ b/doc/pair_tersoff_zbl.html
@@ -193,7 +193,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_tersoff_zbl.txt b/doc/pair_tersoff_zbl.txt
index 53888cd032..40d17db4c1 100644
--- a/doc/pair_tersoff_zbl.txt
+++ b/doc/pair_tersoff_zbl.txt
@@ -190,7 +190,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_tri_lj.html b/doc/pair_tri_lj.html
index cbf14115e9..fd419ce4bb 100644
--- a/doc/pair_tri_lj.html
+++ b/doc/pair_tri_lj.html
@@ -97,7 +97,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_tri_lj.txt b/doc/pair_tri_lj.txt
index 6fb9553bb6..4f216df1b6 100644
--- a/doc/pair_tri_lj.txt
+++ b/doc/pair_tri_lj.txt
@@ -94,7 +94,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_yukawa.html b/doc/pair_yukawa.html
index 496aee843c..b630172c92 100644
--- a/doc/pair_yukawa.html
+++ b/doc/pair_yukawa.html
@@ -63,7 +63,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_yukawa.txt b/doc/pair_yukawa.txt
index 173710d6a2..302234f18f 100644
--- a/doc/pair_yukawa.txt
+++ b/doc/pair_yukawa.txt
@@ -59,7 +59,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/pair_yukawa_colloid.html b/doc/pair_yukawa_colloid.html
index b41a2f6697..7e439b1ec7 100644
--- a/doc/pair_yukawa_colloid.html
+++ b/doc/pair_yukawa_colloid.html
@@ -92,7 +92,7 @@ those packages.  See the <A HREF = "Section_start.html#start_3">Making LAMMPS</A
 section for more info.
 </P>
 <P>You can specify the accelerated styles explicitly in your input script
-by including their suffix, or you can use the <A HREF = "Section_start.html#start_6">-suffix command-line
+by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
 switch</A> when you invoke LAMMPS, or you can
 use the <A HREF = "suffix.html">suffix</A> command in your input script.
 </P>
diff --git a/doc/pair_yukawa_colloid.txt b/doc/pair_yukawa_colloid.txt
index 70eb071d5b..dbd1093311 100644
--- a/doc/pair_yukawa_colloid.txt
+++ b/doc/pair_yukawa_colloid.txt
@@ -89,7 +89,7 @@ section for more info.
 
 You can specify the accelerated styles explicitly in your input script
 by including their suffix, or you can use the "-suffix command-line
-switch"_Section_start.html#start_6 when you invoke LAMMPS, or you can
+switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
 use the "suffix"_suffix.html command in your input script.
 
 See "Section_accelerate"_Section_accelerate.html of the manual for
diff --git a/doc/partition.html b/doc/partition.html
index 31e212fdb2..4832823338 100644
--- a/doc/partition.html
+++ b/doc/partition.html
@@ -30,7 +30,7 @@ partition yes 6* fix all nvt temp 1.0 1.0 0.1
 </P>
 <P>This command invokes the specified command on a subset of the
 partitions of processors you have defined via the -partition
-command-line switch.  See <A HREF = "Section_start.html#start_6">Section_start 6</A>
+command-line switch.  See <A HREF = "Section_start.html#start_7">Section_start 6</A>
 for an explanation of the switch.
 </P>
 <P>Normally, every input script command in your script is invoked by
@@ -51,7 +51,7 @@ will be invoked on all the partitions which do not match the Np
 argument.
 </P>
 <P>Partitions are numbered from 1 to Np, where Np is the number of
-partitions specified by the <A HREF = "Section_start.html#start_6">-partition command-line
+partitions specified by the <A HREF = "Section_start.html#start_7">-partition command-line
 switch</A>.
 </P>
 <P><I>N</I> can be specified in one of two ways.  An explicit numeric value
diff --git a/doc/partition.txt b/doc/partition.txt
index 1253ef0f65..ab62135c83 100644
--- a/doc/partition.txt
+++ b/doc/partition.txt
@@ -27,7 +27,7 @@ partition yes 6* fix all nvt temp 1.0 1.0 0.1 :pre
 
 This command invokes the specified command on a subset of the
 partitions of processors you have defined via the -partition
-command-line switch.  See "Section_start 6"_Section_start.html#start_6
+command-line switch.  See "Section_start 6"_Section_start.html#start_7
 for an explanation of the switch.
 
 Normally, every input script command in your script is invoked by
@@ -49,7 +49,7 @@ argument.
 
 Partitions are numbered from 1 to Np, where Np is the number of
 partitions specified by the "-partition command-line
-switch"_Section_start.html#start_6.
+switch"_Section_start.html#start_7.
 
 {N} can be specified in one of two ways.  An explicit numeric value
 can be used, as in the 1st example above.  Or a wild-card asterisk can
diff --git a/doc/prd.html b/doc/prd.html
index baad8b3dfb..0d522853fb 100644
--- a/doc/prd.html
+++ b/doc/prd.html
@@ -71,7 +71,7 @@ event to occur.
 </P>
 <P>Each replica runs on a partition of one or more processors.  Processor
 partitions are defined at run-time using the -partition command-line
-switch; see <A HREF = "Section_start.html#start_6">Section_start 6</A> of the
+switch; see <A HREF = "Section_start.html#start_7">Section_start 6</A> of the
 manual.  Note that if you have MPI installed, you can run a
 multi-replica simulation with more replicas (partitions) than you have
 physical processors, e.g you can run a 10-replica simulation on one or
diff --git a/doc/prd.txt b/doc/prd.txt
index 52c5406eee..717e89fb60 100644
--- a/doc/prd.txt
+++ b/doc/prd.txt
@@ -58,7 +58,7 @@ event to occur.
 
 Each replica runs on a partition of one or more processors.  Processor
 partitions are defined at run-time using the -partition command-line
-switch; see "Section_start 6"_Section_start.html#start_6 of the
+switch; see "Section_start 6"_Section_start.html#start_7 of the
 manual.  Note that if you have MPI installed, you can run a
 multi-replica simulation with more replicas (partitions) than you have
 physical processors, e.g you can run a 10-replica simulation on one or
diff --git a/doc/processors.html b/doc/processors.html
index 945a5d5cb7..4180afea75 100644
--- a/doc/processors.html
+++ b/doc/processors.html
@@ -89,7 +89,7 @@ communication costs due to the high surface area of each processor's
 sub-domain.
 </P>
 <P>Also note that if multiple partitions are being used then P is the
-number of processors in this partition; see <A HREF = "Section_start.html#start_6">this
+number of processors in this partition; see <A HREF = "Section_start.html#start_7">this
 section</A> for an explanation of the
 -partition command-line switch.  Also note that you can prefix the
 processors command with the <A HREF = "partition.html">partition</A> command to
@@ -236,7 +236,7 @@ dependency bewteen a sending partition <I>Psend</I> and a receiving
 partition <I>Precv</I> which is enforced when each is setting up their own
 mapping of their processors to the simulation box.  Each of <I>Psend</I>
 and <I>Precv</I> must be integers from 1 to Np, where Np is the number of
-partitions you have defined via the <A HREF = "Section_start.html#start_6">-partition command-line
+partitions you have defined via the <A HREF = "Section_start.html#start_7">-partition command-line
 switch</A>.
 </P>
 <P>A "dependency" means that the sending partition will create its 3d
@@ -274,7 +274,7 @@ processors and their mapping to the 3d grid to the specified file
 processors in the manner you desired, which can be tricky to figure
 out, especially when running on multiple partitions or on, a multicore
 machine or when the processor ranks were reordered by use of the
-<A HREF = "Section_start.html#start_6">-reorder command-line switch</A> or due to
+<A HREF = "Section_start.html#start_7">-reorder command-line switch</A> or due to
 use of MPI-specific launch options such as a config file.
 </P>
 <P>If you have multiple partitions you should insure that each one writes
@@ -288,9 +288,9 @@ one-line per processor in this format:
 universe (of multiple simulations), and the original MPI communicator
 used to instantiate LAMMPS, respectively.  The world and universe IDs
 will only be different if you are running on more than one partition;
-see the <A HREF = "Section_start.html#start_6">-partition command-line switch</A>.
+see the <A HREF = "Section_start.html#start_7">-partition command-line switch</A>.
 The universe and original IDs will only be different if you used the
-<A HREF = "Section_start.html#start_6">-reorder command-line switch</A> to reorder
+<A HREF = "Section_start.html#start_7">-reorder command-line switch</A> to reorder
 the processors differently than their rank in the original
 communicator LAMMPS was instantiated with.
 </P>
@@ -320,7 +320,7 @@ option.
 </P>
 <P><B>Related commands:</B>
 </P>
-<P><A HREF = "partition.html">partition</A>, <A HREF = "Section_start.html#start_6">-reorder command-line
+<P><A HREF = "partition.html">partition</A>, <A HREF = "Section_start.html#start_7">-reorder command-line
 switch</A>
 </P>
 <P><B>Default:</B>
diff --git a/doc/processors.txt b/doc/processors.txt
index a8123eee1a..e1e410f0fc 100644
--- a/doc/processors.txt
+++ b/doc/processors.txt
@@ -83,7 +83,7 @@ sub-domain.
 
 Also note that if multiple partitions are being used then P is the
 number of processors in this partition; see "this
-section"_Section_start.html#start_6 for an explanation of the
+section"_Section_start.html#start_7 for an explanation of the
 -partition command-line switch.  Also note that you can prefix the
 processors command with the "partition"_partition.html command to
 easily specify different Px,Py,Pz values for different partitions.
@@ -230,7 +230,7 @@ partition {Precv} which is enforced when each is setting up their own
 mapping of their processors to the simulation box.  Each of {Psend}
 and {Precv} must be integers from 1 to Np, where Np is the number of
 partitions you have defined via the "-partition command-line
-switch"_Section_start.html#start_6.
+switch"_Section_start.html#start_7.
 
 A "dependency" means that the sending partition will create its 3d
 logical grid as Px by Py by Pz and after it has done this, it will
@@ -267,7 +267,7 @@ processors and their mapping to the 3d grid to the specified file
 processors in the manner you desired, which can be tricky to figure
 out, especially when running on multiple partitions or on, a multicore
 machine or when the processor ranks were reordered by use of the
-"-reorder command-line switch"_Section_start.html#start_6 or due to
+"-reorder command-line switch"_Section_start.html#start_7 or due to
 use of MPI-specific launch options such as a config file.
 
 If you have multiple partitions you should insure that each one writes
@@ -281,9 +281,9 @@ The IDs are the processor's rank in this simulation (the world), the
 universe (of multiple simulations), and the original MPI communicator
 used to instantiate LAMMPS, respectively.  The world and universe IDs
 will only be different if you are running on more than one partition;
-see the "-partition command-line switch"_Section_start.html#start_6.
+see the "-partition command-line switch"_Section_start.html#start_7.
 The universe and original IDs will only be different if you used the
-"-reorder command-line switch"_Section_start.html#start_6 to reorder
+"-reorder command-line switch"_Section_start.html#start_7 to reorder
 the processors differently than their rank in the original
 communicator LAMMPS was instantiated with.
 
@@ -314,7 +314,7 @@ The {part} keyword (for the receiving partition) only works with the
 [Related commands:]
 
 "partition"_partition.html, "-reorder command-line
-switch"_Section_start.html#start_6
+switch"_Section_start.html#start_7
 
 [Default:]
 
diff --git a/doc/run_style.html b/doc/run_style.html
index abe21ecdd7..49445df879 100644
--- a/doc/run_style.html
+++ b/doc/run_style.html
@@ -69,7 +69,7 @@ simulations performed by LAMMPS.
 
 <P>The <I>verlet/split</I> style is also a velocity-Verlet integrator, but it
 splits the force calculation within each timestep over 2 partitions of
-processors.  See <A HREF = "Section_start.html#start_6">Section_start 6</A> for an
+processors.  See <A HREF = "Section_start.html#start_7">Section_start 6</A> for an
 explanation of the -partition command-line switch.
 </P>
 <P>Specifically, this style performs all computation except the
@@ -115,7 +115,7 @@ partition yes 2 processors 3 1 5
 thermodyanmic data for the entire simulation will be output to the log
 and screen file of the 1st partition, which are log.lammps.0 and
 screen.0 by default; see the "-plog and -pscreen command-line
-switches"Section_start.html#start_6 to change this.  The log and
+switches"Section_start.html#start_7 to change this.  The log and
 screen file for the 2nd partition will not contain thermodynamic
 output beyone the 1st timestep of the run.
 </P>
diff --git a/doc/run_style.txt b/doc/run_style.txt
index 2484fc4dfa..b683f9c3c1 100644
--- a/doc/run_style.txt
+++ b/doc/run_style.txt
@@ -64,7 +64,7 @@ The {verlet} style is a standard velocity-Verlet integrator.
 
 The {verlet/split} style is also a velocity-Verlet integrator, but it
 splits the force calculation within each timestep over 2 partitions of
-processors.  See "Section_start 6"_Section_start.html#start_6 for an
+processors.  See "Section_start 6"_Section_start.html#start_7 for an
 explanation of the -partition command-line switch.
 
 Specifically, this style performs all computation except the
@@ -110,7 +110,7 @@ When you run in 2-partition mode with the {verlet/split} style, the
 thermodyanmic data for the entire simulation will be output to the log
 and screen file of the 1st partition, which are log.lammps.0 and
 screen.0 by default; see the "-plog and -pscreen command-line
-switches"Section_start.html#start_6 to change this.  The log and
+switches"Section_start.html#start_7 to change this.  The log and
 screen file for the 2nd partition will not contain thermodynamic
 output beyone the 1st timestep of the run.
 
diff --git a/doc/suffix.html b/doc/suffix.html
index 4915dc4cf2..c599782f1d 100644
--- a/doc/suffix.html
+++ b/doc/suffix.html
@@ -26,7 +26,7 @@ suffix gpu
 <P><B>Description:</B>
 </P>
 <P>This command allows you to use variants of various styles if they
-exist.  In that respect it operates the same as the <A HREF = "Section_start.html#start_6">-suffix
+exist.  In that respect it operates the same as the <A HREF = "Section_start.html#start_7">-suffix
 command-line switch</A>.  It also has options
 to turn off/on any suffix setting made via the command line.
 </P>
@@ -80,7 +80,7 @@ commands in your input script.
 </P>
 <P><B>Related commands:</B>
 </P>
-<P><A HREF = "Section_start.html#start_6">Command-line switch -suffix</A>
+<P><A HREF = "Section_start.html#start_7">Command-line switch -suffix</A>
 </P>
 <P><B>Default:</B> none
 </P>
diff --git a/doc/suffix.txt b/doc/suffix.txt
index d417d2008b..be2c1c26f8 100644
--- a/doc/suffix.txt
+++ b/doc/suffix.txt
@@ -24,7 +24,7 @@ suffix gpu :pre
 
 This command allows you to use variants of various styles if they
 exist.  In that respect it operates the same as the "-suffix
-command-line switch"_Section_start.html#start_6.  It also has options
+command-line switch"_Section_start.html#start_7.  It also has options
 to turn off/on any suffix setting made via the command line.
 
 The specified style can be {opt}, {omp}, {gpu}, or {cuda}.  These refer to
@@ -77,6 +77,6 @@ commands in your input script.
 
 [Related commands:]
 
-"Command-line switch -suffix"_Section_start.html#start_6
+"Command-line switch -suffix"_Section_start.html#start_7
 
 [Default:] none
diff --git a/doc/temper.html b/doc/temper.html
index 01157902aa..fd5727b883 100644
--- a/doc/temper.html
+++ b/doc/temper.html
@@ -35,7 +35,7 @@ replicas (ensembles) of a system.  Two or more replicas must be used.
 </P>
 <P>Each replica runs on a partition of one or more processors.  Processor
 partitions are defined at run-time using the -partition command-line
-switch; see <A HREF = "Section_start.html#start_6">Section_start 6</A> of the
+switch; see <A HREF = "Section_start.html#start_7">Section_start 6</A> of the
 manual.  Note that if you have MPI installed, you can run a
 multi-replica simulation with more replicas (partitions) than you have
 physical processors, e.g you can run a 10-replica simulation on one or
@@ -72,7 +72,7 @@ rejected based on a Boltzmann-weighted Metropolis criterion which uses
 <P>As a tempering run proceeds, multiple log files and screen output
 files are created, one per replica.  By default these files are named
 log.lammps.M and screen.M where M is the replica number from 0 to N-1,
-with N = # of replicas.  See the <A HREF = "Section_start.html#start_6">section on command-line
+with N = # of replicas.  See the <A HREF = "Section_start.html#start_7">section on command-line
 switches</A> for info on how to change these
 names.
 </P>
diff --git a/doc/temper.txt b/doc/temper.txt
index 803c505cd5..6283c2b460 100644
--- a/doc/temper.txt
+++ b/doc/temper.txt
@@ -32,7 +32,7 @@ replicas (ensembles) of a system.  Two or more replicas must be used.
 
 Each replica runs on a partition of one or more processors.  Processor
 partitions are defined at run-time using the -partition command-line
-switch; see "Section_start 6"_Section_start.html#start_6 of the
+switch; see "Section_start 6"_Section_start.html#start_7 of the
 manual.  Note that if you have MPI installed, you can run a
 multi-replica simulation with more replicas (partitions) than you have
 physical processors, e.g you can run a 10-replica simulation on one or
@@ -70,7 +70,7 @@ As a tempering run proceeds, multiple log files and screen output
 files are created, one per replica.  By default these files are named
 log.lammps.M and screen.M where M is the replica number from 0 to N-1,
 with N = # of replicas.  See the "section on command-line
-switches"_Section_start.html#start_6 for info on how to change these
+switches"_Section_start.html#start_7 for info on how to change these
 names.
 
 The main screen and log file (log.lammps) will list information about
diff --git a/doc/variable.html b/doc/variable.html
index 103674e342..83ac3efd52 100644
--- a/doc/variable.html
+++ b/doc/variable.html
@@ -129,7 +129,7 @@ is ignored.  This means variables can NOT be re-defined in an input
 script (with 2 exceptions, read further).  This is to allow an input
 script to be processed multiple times without resetting the variables;
 see the <A HREF = "jump.html">jump</A> or <A HREF = "include.html">include</A> commands.  It also
-means that using the <A HREF = "Section_start.html#start_6">command-line switch</A>
+means that using the <A HREF = "Section_start.html#start_7">command-line switch</A>
 -var will override a corresponding index variable setting in the input
 script.
 </P>
@@ -187,7 +187,7 @@ string is assigned.  All processors assign the same string to the
 variable.
 </P>
 <P><I>Index</I> style variables with a single string value can also be set by
-using the command-line switch -var; see <A HREF = "Section_start.html#start_6">this
+using the command-line switch -var; see <A HREF = "Section_start.html#start_7">this
 section</A> for details.
 </P>
 <P>The <I>loop</I> style is identical to the <I>index</I> style except that the
@@ -202,7 +202,7 @@ two arguments N1 and N2.  In this case the loop runs from N1 to N2
 inclusive, and the string N1 is initially assigned to the variable.
 </P>
 <P>For the <I>world</I> style, one or more strings are specified.  There must
-be one string for each processor partition or "world".  See <A HREF = "Section_start.html#start_6">this
+be one string for each processor partition or "world".  See <A HREF = "Section_start.html#start_7">this
 section</A> of the manual for information on
 running LAMMPS with multiple partitions via the "-partition"
 command-line switch.  This variable command assigns one string to each
@@ -216,7 +216,7 @@ different partitions.
 </P>
 <P>For the <I>universe</I> style, one or more strings are specified.  There
 must be at least as many strings as there are processor partitions or
-"worlds".  See <A HREF = "Section_start.html#start_6">this page</A> for information
+"worlds".  See <A HREF = "Section_start.html#start_7">this page</A> for information
 on running LAMMPS with multiple partitions via the "-partition"
 command-line switch.  This variable command initially assigns one
 string to each world.  When a <A HREF = "next.html">next</A> command is encountered
diff --git a/doc/variable.txt b/doc/variable.txt
index 949e2f6751..d42ae0c99b 100644
--- a/doc/variable.txt
+++ b/doc/variable.txt
@@ -123,7 +123,7 @@ is ignored.  This means variables can NOT be re-defined in an input
 script (with 2 exceptions, read further).  This is to allow an input
 script to be processed multiple times without resetting the variables;
 see the "jump"_jump.html or "include"_include.html commands.  It also
-means that using the "command-line switch"_Section_start.html#start_6
+means that using the "command-line switch"_Section_start.html#start_7
 -var will override a corresponding index variable setting in the input
 script.
 
@@ -182,7 +182,7 @@ variable.
 
 {Index} style variables with a single string value can also be set by
 using the command-line switch -var; see "this
-section"_Section_start.html#start_6 for details.
+section"_Section_start.html#start_7 for details.
 
 The {loop} style is identical to the {index} style except that the
 strings are the integers from 1 to N inclusive, if only one argument N
@@ -197,7 +197,7 @@ inclusive, and the string N1 is initially assigned to the variable.
 
 For the {world} style, one or more strings are specified.  There must
 be one string for each processor partition or "world".  See "this
-section"_Section_start.html#start_6 of the manual for information on
+section"_Section_start.html#start_7 of the manual for information on
 running LAMMPS with multiple partitions via the "-partition"
 command-line switch.  This variable command assigns one string to each
 world.  All processors in the world are assigned the same string.  The
@@ -210,7 +210,7 @@ different partitions.
 
 For the {universe} style, one or more strings are specified.  There
 must be at least as many strings as there are processor partitions or
-"worlds".  See "this page"_Section_start.html#start_6 for information
+"worlds".  See "this page"_Section_start.html#start_7 for information
 on running LAMMPS with multiple partitions via the "-partition"
 command-line switch.  This variable command initially assigns one
 string to each world.  When a "next"_next.html command is encountered