From 647d4fe62666eff3b2cc136244c8d8e8a28e1f22 Mon Sep 17 00:00:00 2001 From: sjplimp Date: Thu, 31 Jan 2013 16:39:48 +0000 Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9348 f3b2605a-c512-4ea7-a41b-209d697bcdaa --- doc/Section_commands.html | 74 +++++++++++++------------- doc/Section_commands.txt | 3 ++ doc/atom_style.html | 54 +++++++++++++------ doc/atom_style.txt | 52 +++++++++++++------ doc/compute.html | 1 + doc/compute.txt | 1 + doc/fix.html | 5 +- doc/fix.txt | 3 +- doc/pair_coeff.html | 1 + doc/pair_coeff.txt | 1 + doc/pair_style.html | 1 + doc/pair_style.txt | 1 + doc/read_data.html | 106 ++++++++++++++++++++++++++++++-------- doc/read_data.txt | 97 ++++++++++++++++++++++++++-------- doc/read_restart.html | 2 +- doc/read_restart.txt | 2 +- 16 files changed, 288 insertions(+), 116 deletions(-) diff --git a/doc/Section_commands.html b/doc/Section_commands.html index e19d54733f..220a3db9a0 100644 --- a/doc/Section_commands.html +++ b/doc/Section_commands.html @@ -344,13 +344,13 @@ of each style or click on the style itself for a full description: dragdt/resetefieldenforce2devaporateexternalfreezegcmc gravityheatindentlangevinlineforcemomentummovemsst nebnphnphugnph/aspherenph/spherenptnpt/aspherenpt/sphere -nvenve/aspherenve/asphere/noforcenve/limitnve/linenve/noforcenve/spherenve/tri -nvtnvt/aspherenvt/sllodnvt/sphereorient/fccplaneforcepoemspour -press/berendsenprintqeq/combreax/bondsrecenterrestrainrigidrigid/nph -rigid/nptrigid/nverigid/nvtsetforceshakespringspring/rgspring/self -srdstore/forcestore/statetemp/berendsentemp/rescalethermal/conductivitytmdttm -viscosityviscouswall/colloidwall/granwall/harmonicwall/lj126wall/lj93wall/piston -wall/reflectwall/regionwall/srd +nvenve/aspherenve/asphere/noforcenve/bodynve/limitnve/linenve/noforcenve/sphere +nve/trinvtnvt/aspherenvt/sllodnvt/sphereorient/fccplaneforcepoems +pourpress/berendsenprintqeq/combreax/bondsrecenterrestrainrigid +rigid/nphrigid/nptrigid/nverigid/nvtsetforceshakespringspring/rg +spring/selfsrdstore/forcestore/statetemp/berendsentemp/rescalethermal/conductivitytmd +ttmviscosityviscouswall/colloidwall/granwall/harmonicwall/lj126wall/lj93 +wall/pistonwall/reflectwall/regionwall/srd

These are fix styles contributed by users, which can be used if @@ -381,15 +381,15 @@ package. each style or click on the style itself for a full description:

- - - - - - - - - + + + + + + + +
angle/localatom/moleculebond/localcentro/atomcluster/atomcna/atom
comcom/moleculecontact/atomcoord/atomdamage/atomdihedral/local
displace/atomerotate/asphereerotate/sphereerotate/sphere/atomevent/displacegroup/group
gyrationgyration/moleculeheat/fluximproper/localinertia/moleculeke
ke/atommsdmsd/moleculepairpair/localpe
pe/atompressureproperty/atomproperty/localproperty/moleculerdf
reducereduce/regionslicestress/atomtemptemp/asphere
temp/comtemp/deformtemp/partialtemp/profiletemp/ramptemp/region
temp/spheretivoronoi/atom +
angle/localatom/moleculebody/localbond/localcentro/atomcluster/atom
cna/atomcomcom/moleculecontact/atomcoord/atomdamage/atom
dihedral/localdisplace/atomerotate/asphereerotate/sphereerotate/sphere/atomevent/displace
group/groupgyrationgyration/moleculeheat/fluximproper/localinertia/molecule
keke/atommsdmsd/moleculepairpair/local
pepe/atompressureproperty/atomproperty/localproperty/molecule
rdfreducereduce/regionslicestress/atomtemp
temp/aspheretemp/comtemp/deformtemp/partialtemp/profiletemp/ramp
temp/regiontemp/spheretivoronoi/atom

These are compute styles contributed by users, which can be used if @@ -418,27 +418,27 @@ potentials. Click on the style itself for a full description:

- - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + +
nonehybridhybrid/overlayadp
airebobeckbopborn
born/coul/longborn/coul/msmborn/coul/wolfbrownian
brownian/polybuckbuck/coul/cutbuck/coul/long
buck/coul/msmbuck/long/coul/longcolloidcomb
coul/cutcoul/debyecoul/dsfcoul/long
coul/msmcoul/wolfdipole/cutdpd
dpd/tstatdsmceameam/alloy
eam/fseimgaussgayberne
gran/hertz/historygran/hookegran/hooke/historyhbond/dreiding/lj
hbond/dreiding/morsekimlcbopline/lj
lj/charmm/coul/charmmlj/charmm/coul/charmm/implicitlj/charmm/coul/longlj/charmm/coul/msm
lj/class2lj/class2/coul/cutlj/class2/coul/longlj/cut
lj/cut/coul/cutlj/cut/coul/debyelj/cut/coul/dsflj/cut/coul/long
lj/cut/coul/msmlj/long/coul/longlj/cut/tip4p/longlj/long/tip4p/long
lj/expandlj/gromacslj/gromacs/coul/gromacslj/smooth
lj/smooth/linearlj96/cutlubricatelubricate/poly
lubricateUlubricateU/polymeammie/cut
morseperi/lpsperi/pmbreax
reboresquaredsoftsw
tabletersofftersoff/zbltri/lj
yukawayukawa/colloid +
airebobeckbodybop
bornborn/coul/longborn/coul/msmborn/coul/wolf
brownianbrownian/polybuckbuck/coul/cut
buck/coul/longbuck/coul/msmbuck/long/coul/longcolloid
combcoul/cutcoul/debyecoul/dsf
coul/longcoul/msmcoul/wolfdipole/cut
dpddpd/tstatdsmceam
eam/alloyeam/fseimgauss
gaybernegran/hertz/historygran/hookegran/hooke/history
hbond/dreiding/ljhbond/dreiding/morsekimlcbop
line/ljlj/charmm/coul/charmmlj/charmm/coul/charmm/implicitlj/charmm/coul/long
lj/charmm/coul/msmlj/class2lj/class2/coul/cutlj/class2/coul/long
lj/cutlj/cut/coul/cutlj/cut/coul/debyelj/cut/coul/dsf
lj/cut/coul/longlj/cut/coul/msmlj/long/coul/longlj/cut/tip4p/long
lj/long/tip4p/longlj/expandlj/gromacslj/gromacs/coul/gromacs
lj/smoothlj/smooth/linearlj96/cutlubricate
lubricate/polylubricateUlubricateU/polymeam
mie/cutmorseperi/lpsperi/pmb
reaxreboresquaredsoft
swtabletersofftersoff/zbl
tri/ljyukawayukawa/colloid

These are pair styles contributed by users, which can be used if diff --git a/doc/Section_commands.txt b/doc/Section_commands.txt index a313d6ca8b..d61077259b 100644 --- a/doc/Section_commands.txt +++ b/doc/Section_commands.txt @@ -446,6 +446,7 @@ of each style or click on the style itself for a full description: "nve"_fix_nve.html, "nve/asphere"_fix_nve_asphere.html, "nve/asphere/noforce"_fix_nve_asphere_noforce.html, +"nve/body"_fix_nve_body.html, "nve/limit"_fix_nve_limit.html, "nve/line"_fix_nve_line.html, "nve/noforce"_fix_nve_noforce.html, @@ -547,6 +548,7 @@ each style or click on the style itself for a full description: "angle/local"_compute_angle_local.html, "atom/molecule"_compute_atom_molecule.html, +"body/local"_compute_body_local.html, "bond/local"_compute_bond_local.html, "centro/atom"_compute_centro_atom.html, "cluster/atom"_compute_cluster_atom.html, @@ -634,6 +636,7 @@ potentials. Click on the style itself for a full description: "adp"_pair_adp.html, "airebo"_pair_airebo.html, "beck"_pair_beck.html, +"body"_pair_body.html, "bop"_pair_bop.html, "born"_pair_born.html, "born/coul/long"_pair_born.html, diff --git a/doc/atom_style.html b/doc/atom_style.html index 77ca19b72f..ff8009158f 100644 --- a/doc/atom_style.html +++ b/doc/atom_style.html @@ -15,17 +15,21 @@

atom_style style args 
 
-