This commit is contained in:
Eisuke Kawashima
2020-03-14 12:38:28 +09:00
parent fa7085be07
commit 649a8cc01a
401 changed files with 617 additions and 617 deletions

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@ -532,9 +532,9 @@ class ThermoGLE(Thermostat):
J. Chem. Phys. 134, 084104 (2011)).
Attributes:
ns: The number of auxilliary degrees of freedom.
ns: The number of auxiliary degrees of freedom.
s: An array holding all the momenta, including the ones for the
auxilliary degrees of freedom.
auxiliary degrees of freedom.
Depend objects:
A: Drift matrix giving the damping time scales for all the different
@ -560,7 +560,7 @@ class ThermoGLE(Thermostat):
SST = Constants.kb*(self.C - np.dot(self.T,np.dot(self.C,self.T.T)))
# Uses a symetric decomposition rather than Cholesky, since it is more stable
# Uses a symmetric decomposition rather than Cholesky, since it is more stable
return root_herm(SST)
def get_C(self):
@ -675,10 +675,10 @@ class ThermoNMGLE(Thermostat):
GLE for each normal mode
Attributes:
ns: The number of auxilliary degrees of freedom.
ns: The number of auxiliary degrees of freedom.
nb: The number of beads.
s: An array holding all the momenta, including the ones for the
auxilliary degrees of freedom.
auxiliary degrees of freedom.
Depend objects:
A: Drift matrix giving the damping time scales for all the different