move some styles around
This commit is contained in:
Axel Kohlmeyer
@ -558,6 +558,7 @@ short-range or long-range interactions.
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* :doc:`pair_style lj/cut/dipole/cut <pair_dipole>`
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* :doc:`pair_style lj/cut/dipole/long <pair_dipole>`
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* :doc:`pair_style lj/long/dipole/long <pair_dipole>`
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* :doc: `angle_style dipole <angle_dipole>`
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* examples/dipole
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----------
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@ -1454,7 +1455,9 @@ listing, "ls src/MISC", to see the list of commands.
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**Supporting info:**
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* src/MISC: filenames -> commands
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* :doc:`bond_style special <bond_special>`
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* :doc:`compute ti <compute_ti>`
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* :doc:`fix deposit <fix_deposit>`
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* :doc:`fix evaporate <fix_evaporate>`
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* :doc:`fix imd <fix_imd>`
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* :doc:`fix oneway <fix_oneway>`
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@ -1462,6 +1465,7 @@ listing, "ls src/MISC", to see the list of commands.
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* :doc:`fix ttm <fix_ttm>`
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* :doc:`fix thermal/conductivity <fix_thermal_conductivity>`
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* :doc:`fix viscosity <fix_viscosity>`
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* :doc:`pair_style list <pair_list>`
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* examples/KAPPA
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* examples/VISCOSITY
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* https://www.lammps.org/pictures.html#ttm
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@ -2319,10 +2323,13 @@ another set.
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* :doc:`prd <prd>`
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* :doc:`tad <tad>`
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* :doc:`temper <temper>`,
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* :doc:`temper/npt <temper_npt>`,
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* :doc:`temper/grem <temper_grem>`,
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* :doc:`run_style verlet/split <run_style>`
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* examples/neb
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* examples/prd
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* examples/tad
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* examples/PACKAGES/grem
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----------
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@ -53,7 +53,7 @@ Restrictions
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""""""""""""
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This angle style can only be used if LAMMPS was built with the
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USER-MISC package.
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MOLECULE package.
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Related commands
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""""""""""""""""
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@ -64,7 +64,7 @@ Restrictions
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""""""""""""
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This angle style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -88,7 +88,7 @@ Restrictions
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""""""""""""
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This angle style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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DIPOLE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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.. note::
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@ -106,7 +106,9 @@ page for more info.
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The :doc:`newton <newton>` command for intramolecular interactions must be "on"
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(which is the default except when using some accelerator packages).
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This angle style should not be used with SHAKE.
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.. note::
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This angle style should **NOT** be used with fix shake.
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Related commands
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""""""""""""""""
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@ -50,7 +50,7 @@ Restrictions
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""""""""""""
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This angle style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -49,7 +49,7 @@ Restrictions
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""""""""""""
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This angle style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -49,7 +49,7 @@ Restrictions
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""""""""""""
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This angle style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -57,7 +57,7 @@ Restrictions
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""""""""""""
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This angle style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -50,7 +50,7 @@ Restrictions
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""""""""""""
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This bond style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -56,7 +56,7 @@ Restrictions
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""""""""""""
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This bond style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -54,7 +54,7 @@ Restrictions
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""""""""""""
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This bond style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -86,7 +86,7 @@ Restrictions
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""""""""""""
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This bond style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MISC package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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This bond style requires the use of a :doc:`pair_style <pair_style>` which
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@ -64,7 +64,7 @@ Restrictions
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""""""""""""
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This dihedral style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -55,7 +55,7 @@ Restrictions
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""""""""""""
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This angle style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -51,7 +51,7 @@ Restrictions
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""""""""""""
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This angle style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -56,7 +56,7 @@ Restrictions
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""""""""""""
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This angle style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -89,7 +89,7 @@ Restrictions
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""""""""""""
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This dihedral style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -245,7 +245,7 @@ Restrictions
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""""""""""""
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These dihedral styles can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -99,7 +99,7 @@ invoked by the :doc:`minimize <minimize>` command.
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Restrictions
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""""""""""""
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This fix is part of the USER-MISC package. It is only enabled if
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This fix is part of the MISC package. It is only enabled if
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LAMMPS was built with that package. See the :doc:`Build package
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<Build_package>` doc page for more info.
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@ -66,7 +66,7 @@ processors be on the order of the number of desired replicas. A
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100-replica simulation would require at least 100 processors (1 per
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world at minimum). If many replicas are needed on a small number of
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processors, multi-replica runs can be run outside of LAMMPS. An
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example of this can be found in examples/USER-MISC/grem and has no
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example of this can be found in examples/PACKAGES/grem and has no
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limit on the number of replicas per processor. However, this is very
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inefficient and error prone and should be avoided if possible.
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@ -100,7 +100,7 @@ fix is "intensive".
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Restrictions
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""""""""""""
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This fix is part of the USER-MISC package. It is only enabled if
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This fix is part of the REPLICA package. It is only enabled if
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LAMMPS was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
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Related commands
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@ -144,7 +144,7 @@ the :doc:`run <run>` command. This fix is not invoked during
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Restrictions
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""""""""""""
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This fix is part of the USER-MISC package. It is only enabled if
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This fix is part of the MISC package. It is only enabled if
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LAMMPS was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
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Related commands
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@ -64,7 +64,7 @@ Restrictions
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""""""""""""
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This improper style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -54,7 +54,7 @@ Restrictions
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""""""""""""
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This improper style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -60,7 +60,7 @@ Restrictions
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""""""""""""
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This angle style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -72,7 +72,7 @@ Restrictions
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""""""""""""
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This improper style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -49,7 +49,7 @@ Restrictions
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""""""""""""
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This improper style can only be used if LAMMPS was built with the
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USER-MISC package. See the :doc:`Build package <Build_package>` doc
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MOLECULE package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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Related commands
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@ -142,7 +142,7 @@ styles in LAMMPS, an atom I will not interact with multiple images of
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atom J (assuming the images are within the cutoff distance), but only
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with the nearest image.
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This style is part of the USER-MISC package. It is only enabled if
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This style is part of the MISC package. It is only enabled if
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LAMMPS is build with that package. See the :doc:`Build package <Build_package>` doc page on for more info.
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Related commands
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@ -101,7 +101,7 @@ identical to :doc:`temper <temper>`.
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Restrictions
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""""""""""""
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This command can only be used if LAMMPS was built with the USER-MISC
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This command can only be used if LAMMPS was built with the REPLICA
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package. See the :doc:`Build package <Build_package>` doc
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page for more info.
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@ -51,7 +51,7 @@ on how the parallel tempering is handled in general.
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Restrictions
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""""""""""""
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This command can only be used if LAMMPS was built with the USER-MISC
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This command can only be used if LAMMPS was built with the REPLICA
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package. See the :doc:`Build package <Build_package>` doc page for more
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info.
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