diff --git a/doc/src/Howto_viz.rst b/doc/src/Howto_viz.rst index 573aa13232..3848811b13 100644 --- a/doc/src/Howto_viz.rst +++ b/doc/src/Howto_viz.rst @@ -29,4 +29,4 @@ snapshots. .. _ensight: http://www.ensight.com -.. _atomeye: http://mt.seas.upenn.edu/Archive/Graphics/A +.. _atomeye: http://li.mit.edu/Archive/Graphics/A/ diff --git a/doc/src/Python_examples.rst b/doc/src/Python_examples.rst index f26a23dd35..9a920eec13 100644 --- a/doc/src/Python_examples.rst +++ b/doc/src/Python_examples.rst @@ -44,12 +44,12 @@ AtomEye WWW pages `here `_ or `here `_ for more details: .. parsed-literal:: - http://mt.seas.upenn.edu/Archive/Graphics/A - http://mt.seas.upenn.edu/Archive/Graphics/A3/A3.html + http://li.mit.edu/Archive/Graphics/A/ + http://li.mit.edu/Archive/Graphics/A3/A3.html -.. _atomeye: http://mt.seas.upenn.edu/Archive/Graphics/A +.. _atomeye: http://li.mit.edu/Archive/Graphics/A/ -.. _atomeye3: http://mt.seas.upenn.edu/Archive/Graphics/A3/A3.html +.. _atomeye3: http://li.mit.edu/Archive/Graphics/A3/A3.html The latter link is to AtomEye 3 which has the scripting capability needed by these Python scripts. diff --git a/doc/src/Tools.rst b/doc/src/Tools.rst index 7b39bcfd28..e03f874182 100644 --- a/doc/src/Tools.rst +++ b/doc/src/Tools.rst @@ -387,7 +387,7 @@ lmp2cfg tool The lmp2cfg sub-directory contains a tool for converting LAMMPS output files into a series of \*.cfg files which can be read into the -`AtomEye `_ visualizer. See +`AtomEye `_ visualizer. See the README file for more information. This tool was written by Ara Kooser at Sandia (askoose at sandia.gov). @@ -403,7 +403,7 @@ The matlab sub-directory contains several `MATLAB `_ scripts for post-processing LAMMPS output. The scripts include readers for log and dump files, a reader for EAM potential files, and a converter that reads LAMMPS dump files and produces CFG files that can be visualized -with the `AtomEye `_ +with the `AtomEye `_ visualizer. See the README.pdf file for more information. diff --git a/doc/src/dump.rst b/doc/src/dump.rst index b0d2dbbf18..99def93c7f 100644 --- a/doc/src/dump.rst +++ b/doc/src/dump.rst @@ -305,7 +305,7 @@ be cut and pasted directly into a data file read by the Style *cfg* has the same command syntax as style *custom* and writes extended CFG format files, as used by the -`AtomEye `_ visualization +`AtomEye `_ visualization package. Since the extended CFG format uses a single snapshot of the system per file, a wildcard "\*" must be included in the filename, as discussed below. The list of atom attributes for style *cfg* must diff --git a/doc/src/dump_image.rst b/doc/src/dump_image.rst index 7a318a4a9b..b5d19fd6d7 100644 --- a/doc/src/dump_image.rst +++ b/doc/src/dump_image.rst @@ -223,7 +223,7 @@ every atom type is C (carbon). Every element has a color and diameter associated with it, which is the same as the colors and sizes used by the `AtomEye `_ visualization package. -.. _atomeye: http://mt.seas.upenn.edu/Archive/Graphics/A +.. _atomeye: http://li.mit.edu/Archive/Graphics/A/ If other atom attributes are used for the *color* or *diameter* settings, they are interpreted in the following way. diff --git a/doc/src/dump_modify.rst b/doc/src/dump_modify.rst index b2c1566894..c9582775dc 100644 --- a/doc/src/dump_modify.rst +++ b/doc/src/dump_modify.rst @@ -213,7 +213,7 @@ In the case of *xyz* format dumps, there are no restrictions to what label can be used as an element name. Any white-space separated text will be accepted. -.. _atomeye: http://mt.seas.upenn.edu/Archive/Graphics/A +.. _atomeye: http://li.mit.edu/Archive/Graphics/A/ ----------