diff --git a/doc/Section_tools.html b/doc/Section_tools.html index 9e7c69d6c8..41041754fd 100644 --- a/doc/Section_tools.html +++ b/doc/Section_tools.html @@ -52,6 +52,7 @@ own sub-directories with their own Makefiles.
The lmp2vmd sub-directory contains some scripts for converting LAMMPS +files into formats suitable for visualizing with the VMD +package. +
+One script extracts bond topology info from a LAMMPS data file. A +second script attached amino acid (residue) information to what is +extracted from a data file. See the README file for more information. +
+These scripts werer written by Axel Kohlmeyer (akohlmey at +cmm.chem.upenn.edu) at U Penn. +
+The matlab sub-directory contains several MATLAB scripts for diff --git a/doc/Section_tools.txt b/doc/Section_tools.txt index 3532f9c28a..524bc2f538 100644 --- a/doc/Section_tools.txt +++ b/doc/Section_tools.txt @@ -48,6 +48,7 @@ own sub-directories with their own Makefiles. "lmp2arc"_#arc "lmp2cfg"_#cfg "lmp2traj"_#traj +"lmp2vmd"_#vmd "matlab"_#matlab "micelle2d"_#micelle "msi2lmp"_#msi @@ -185,6 +186,21 @@ This tool was written by Ara Kooser at Sandia (askoose at sandia.gov). :line +lmp2vmd tool :h4,link(vmd) + +The lmp2vmd sub-directory contains some scripts for converting LAMMPS +files into formats suitable for visualizing with the "VMD +package"_http://www.ks.uiuc.edu/Research/vmd/. + +One script extracts bond topology info from a LAMMPS data file. A +second script attached amino acid (residue) information to what is +extracted from a data file. See the README file for more information. + +These scripts werer written by Axel Kohlmeyer (akohlmey at +cmm.chem.upenn.edu) at U Penn. + +:line + matlab tool :h4,link(matlab) The matlab sub-directory contains several "MATLAB"_matlab scripts for