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sjplimp
2016-04-07 21:16:06 +00:00
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60
doc/Section_commands.html
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@ -463,8 +463,8 @@ in the command&#8217;s documentation.</p>
<table border="1" class="docutils"> <table border="1" class="docutils">
<colgroup> <colgroup>
<col width="17%" /> <col width="17%" />
<col width="15%" />
<col width="17%" /> <col width="17%" />
<col width="15%" />
<col width="17%" /> <col width="17%" />
<col width="17%" /> <col width="17%" />
<col width="17%" /> <col width="17%" />
@ -478,109 +478,109 @@ in the command&#8217;s documentation.</p>
<td><a class="reference internal" href="bond_coeff.html"><em>bond_coeff</em></a></td> <td><a class="reference internal" href="bond_coeff.html"><em>bond_coeff</em></a></td>
</tr> </tr>
<tr class="row-even"><td><a class="reference internal" href="bond_style.html"><em>bond_style</em></a></td> <tr class="row-even"><td><a class="reference internal" href="bond_style.html"><em>bond_style</em></a></td>
<td><a class="reference internal" href="bond_write.html"><em>bond_write</em></a></td>
<td><a class="reference internal" href="boundary.html"><em>boundary</em></a></td> <td><a class="reference internal" href="boundary.html"><em>boundary</em></a></td>
<td><a class="reference internal" href="box.html"><em>box</em></a></td> <td><a class="reference internal" href="box.html"><em>box</em></a></td>
<td><a class="reference internal" href="change_box.html"><em>change_box</em></a></td> <td><a class="reference internal" href="change_box.html"><em>change_box</em></a></td>
<td><a class="reference internal" href="clear.html"><em>clear</em></a></td> <td><a class="reference internal" href="clear.html"><em>clear</em></a></td>
<td><a class="reference internal" href="comm_modify.html"><em>comm_modify</em></a></td>
</tr> </tr>
<tr class="row-odd"><td><a class="reference internal" href="comm_style.html"><em>comm_style</em></a></td> <tr class="row-odd"><td><a class="reference internal" href="comm_modify.html"><em>comm_modify</em></a></td>
<td><a class="reference internal" href="comm_style.html"><em>comm_style</em></a></td>
<td><a class="reference internal" href="compute.html"><em>compute</em></a></td> <td><a class="reference internal" href="compute.html"><em>compute</em></a></td>
<td><a class="reference internal" href="compute_modify.html"><em>compute_modify</em></a></td> <td><a class="reference internal" href="compute_modify.html"><em>compute_modify</em></a></td>
<td><a class="reference internal" href="create_atoms.html"><em>create_atoms</em></a></td> <td><a class="reference internal" href="create_atoms.html"><em>create_atoms</em></a></td>
<td><a class="reference internal" href="create_bonds.html"><em>create_bonds</em></a></td> <td><a class="reference internal" href="create_bonds.html"><em>create_bonds</em></a></td>
<td><a class="reference internal" href="create_box.html"><em>create_box</em></a></td>
</tr> </tr>
<tr class="row-even"><td><a class="reference internal" href="delete_atoms.html"><em>delete_atoms</em></a></td> <tr class="row-even"><td><a class="reference internal" href="create_box.html"><em>create_box</em></a></td>
<td><a class="reference internal" href="delete_atoms.html"><em>delete_atoms</em></a></td>
<td><a class="reference internal" href="delete_bonds.html"><em>delete_bonds</em></a></td> <td><a class="reference internal" href="delete_bonds.html"><em>delete_bonds</em></a></td>
<td><a class="reference internal" href="dielectric.html"><em>dielectric</em></a></td> <td><a class="reference internal" href="dielectric.html"><em>dielectric</em></a></td>
<td><a class="reference internal" href="dihedral_coeff.html"><em>dihedral_coeff</em></a></td> <td><a class="reference internal" href="dihedral_coeff.html"><em>dihedral_coeff</em></a></td>
<td><a class="reference internal" href="dihedral_style.html"><em>dihedral_style</em></a></td> <td><a class="reference internal" href="dihedral_style.html"><em>dihedral_style</em></a></td>
<td><a class="reference internal" href="dimension.html"><em>dimension</em></a></td>
</tr> </tr>
<tr class="row-odd"><td><a class="reference internal" href="displace_atoms.html"><em>displace_atoms</em></a></td> <tr class="row-odd"><td><a class="reference internal" href="dimension.html"><em>dimension</em></a></td>
<td><a class="reference internal" href="displace_atoms.html"><em>displace_atoms</em></a></td>
<td><a class="reference internal" href="dump.html"><em>dump</em></a></td> <td><a class="reference internal" href="dump.html"><em>dump</em></a></td>
<td><a class="reference internal" href="dump_image.html"><em>dump image</em></a></td> <td><a class="reference internal" href="dump_image.html"><em>dump image</em></a></td>
<td><a class="reference internal" href="dump_modify.html"><em>dump_modify</em></a></td> <td><a class="reference internal" href="dump_modify.html"><em>dump_modify</em></a></td>
<td><a class="reference internal" href="dump_image.html"><em>dump movie</em></a></td> <td><a class="reference internal" href="dump_image.html"><em>dump movie</em></a></td>
<td><a class="reference internal" href="echo.html"><em>echo</em></a></td>
</tr> </tr>
<tr class="row-even"><td><a class="reference internal" href="fix.html"><em>fix</em></a></td> <tr class="row-even"><td><a class="reference internal" href="echo.html"><em>echo</em></a></td>
<td><a class="reference internal" href="fix.html"><em>fix</em></a></td>
<td><a class="reference internal" href="fix_modify.html"><em>fix_modify</em></a></td> <td><a class="reference internal" href="fix_modify.html"><em>fix_modify</em></a></td>
<td><a class="reference internal" href="group.html"><em>group</em></a></td> <td><a class="reference internal" href="group.html"><em>group</em></a></td>
<td><a class="reference internal" href="if.html"><em>if</em></a></td> <td><a class="reference internal" href="if.html"><em>if</em></a></td>
<td><a class="reference internal" href="info.html"><em>info</em></a></td> <td><a class="reference internal" href="info.html"><em>info</em></a></td>
<td><a class="reference internal" href="improper_coeff.html"><em>improper_coeff</em></a></td>
</tr> </tr>
<tr class="row-odd"><td><a class="reference internal" href="improper_style.html"><em>improper_style</em></a></td> <tr class="row-odd"><td><a class="reference internal" href="improper_coeff.html"><em>improper_coeff</em></a></td>
<td><a class="reference internal" href="improper_style.html"><em>improper_style</em></a></td>
<td><a class="reference internal" href="include.html"><em>include</em></a></td> <td><a class="reference internal" href="include.html"><em>include</em></a></td>
<td><a class="reference internal" href="jump.html"><em>jump</em></a></td> <td><a class="reference internal" href="jump.html"><em>jump</em></a></td>
<td><a class="reference internal" href="kspace_modify.html"><em>kspace_modify</em></a></td> <td><a class="reference internal" href="kspace_modify.html"><em>kspace_modify</em></a></td>
<td><a class="reference internal" href="kspace_style.html"><em>kspace_style</em></a></td> <td><a class="reference internal" href="kspace_style.html"><em>kspace_style</em></a></td>
<td><a class="reference internal" href="label.html"><em>label</em></a></td>
</tr> </tr>
<tr class="row-even"><td><a class="reference internal" href="lattice.html"><em>lattice</em></a></td> <tr class="row-even"><td><a class="reference internal" href="label.html"><em>label</em></a></td>
<td><a class="reference internal" href="lattice.html"><em>lattice</em></a></td>
<td><a class="reference internal" href="log.html"><em>log</em></a></td> <td><a class="reference internal" href="log.html"><em>log</em></a></td>
<td><a class="reference internal" href="mass.html"><em>mass</em></a></td> <td><a class="reference internal" href="mass.html"><em>mass</em></a></td>
<td><a class="reference internal" href="minimize.html"><em>minimize</em></a></td> <td><a class="reference internal" href="minimize.html"><em>minimize</em></a></td>
<td><a class="reference internal" href="min_modify.html"><em>min_modify</em></a></td> <td><a class="reference internal" href="min_modify.html"><em>min_modify</em></a></td>
<td><a class="reference internal" href="min_style.html"><em>min_style</em></a></td>
</tr> </tr>
<tr class="row-odd"><td><a class="reference internal" href="molecule.html"><em>molecule</em></a></td> <tr class="row-odd"><td><a class="reference internal" href="min_style.html"><em>min_style</em></a></td>
<td><a class="reference internal" href="molecule.html"><em>molecule</em></a></td>
<td><a class="reference internal" href="neb.html"><em>neb</em></a></td> <td><a class="reference internal" href="neb.html"><em>neb</em></a></td>
<td><a class="reference internal" href="neigh_modify.html"><em>neigh_modify</em></a></td> <td><a class="reference internal" href="neigh_modify.html"><em>neigh_modify</em></a></td>
<td><a class="reference internal" href="neighbor.html"><em>neighbor</em></a></td> <td><a class="reference internal" href="neighbor.html"><em>neighbor</em></a></td>
<td><a class="reference internal" href="newton.html"><em>newton</em></a></td> <td><a class="reference internal" href="newton.html"><em>newton</em></a></td>
<td><a class="reference internal" href="next.html"><em>next</em></a></td>
</tr> </tr>
<tr class="row-even"><td><a class="reference internal" href="package.html"><em>package</em></a></td> <tr class="row-even"><td><a class="reference internal" href="next.html"><em>next</em></a></td>
<td><a class="reference internal" href="package.html"><em>package</em></a></td>
<td><a class="reference internal" href="pair_coeff.html"><em>pair_coeff</em></a></td> <td><a class="reference internal" href="pair_coeff.html"><em>pair_coeff</em></a></td>
<td><a class="reference internal" href="pair_modify.html"><em>pair_modify</em></a></td> <td><a class="reference internal" href="pair_modify.html"><em>pair_modify</em></a></td>
<td><a class="reference internal" href="pair_style.html"><em>pair_style</em></a></td> <td><a class="reference internal" href="pair_style.html"><em>pair_style</em></a></td>
<td><a class="reference internal" href="pair_write.html"><em>pair_write</em></a></td> <td><a class="reference internal" href="pair_write.html"><em>pair_write</em></a></td>
<td><a class="reference internal" href="partition.html"><em>partition</em></a></td>
</tr> </tr>
<tr class="row-odd"><td><a class="reference internal" href="prd.html"><em>prd</em></a></td> <tr class="row-odd"><td><a class="reference internal" href="partition.html"><em>partition</em></a></td>
<td><a class="reference internal" href="prd.html"><em>prd</em></a></td>
<td><a class="reference internal" href="print.html"><em>print</em></a></td> <td><a class="reference internal" href="print.html"><em>print</em></a></td>
<td><a class="reference internal" href="processors.html"><em>processors</em></a></td> <td><a class="reference internal" href="processors.html"><em>processors</em></a></td>
<td><a class="reference internal" href="python.html"><em>python</em></a></td> <td><a class="reference internal" href="python.html"><em>python</em></a></td>
<td><a class="reference internal" href="quit.html"><em>quit</em></a></td> <td><a class="reference internal" href="quit.html"><em>quit</em></a></td>
<td><a class="reference internal" href="read_data.html"><em>read_data</em></a></td>
</tr> </tr>
<tr class="row-even"><td><a class="reference internal" href="read_dump.html"><em>read_dump</em></a></td> <tr class="row-even"><td><a class="reference internal" href="read_data.html"><em>read_data</em></a></td>
<td><a class="reference internal" href="read_dump.html"><em>read_dump</em></a></td>
<td><a class="reference internal" href="read_restart.html"><em>read_restart</em></a></td> <td><a class="reference internal" href="read_restart.html"><em>read_restart</em></a></td>
<td><a class="reference internal" href="region.html"><em>region</em></a></td> <td><a class="reference internal" href="region.html"><em>region</em></a></td>
<td><a class="reference internal" href="replicate.html"><em>replicate</em></a></td> <td><a class="reference internal" href="replicate.html"><em>replicate</em></a></td>
<td><a class="reference internal" href="rerun.html"><em>rerun</em></a></td> <td><a class="reference internal" href="rerun.html"><em>rerun</em></a></td>
<td><a class="reference internal" href="reset_timestep.html"><em>reset_timestep</em></a></td>
</tr> </tr>
<tr class="row-odd"><td><a class="reference internal" href="restart.html"><em>restart</em></a></td> <tr class="row-odd"><td><a class="reference internal" href="reset_timestep.html"><em>reset_timestep</em></a></td>
<td><a class="reference internal" href="restart.html"><em>restart</em></a></td>
<td><a class="reference internal" href="run.html"><em>run</em></a></td> <td><a class="reference internal" href="run.html"><em>run</em></a></td>
<td><a class="reference internal" href="run_style.html"><em>run_style</em></a></td> <td><a class="reference internal" href="run_style.html"><em>run_style</em></a></td>
<td><a class="reference internal" href="set.html"><em>set</em></a></td> <td><a class="reference internal" href="set.html"><em>set</em></a></td>
<td><a class="reference internal" href="shell.html"><em>shell</em></a></td> <td><a class="reference internal" href="shell.html"><em>shell</em></a></td>
<td><a class="reference internal" href="special_bonds.html"><em>special_bonds</em></a></td>
</tr> </tr>
<tr class="row-even"><td><a class="reference internal" href="suffix.html"><em>suffix</em></a></td> <tr class="row-even"><td><a class="reference internal" href="special_bonds.html"><em>special_bonds</em></a></td>
<td><a class="reference internal" href="suffix.html"><em>suffix</em></a></td>
<td><a class="reference internal" href="tad.html"><em>tad</em></a></td> <td><a class="reference internal" href="tad.html"><em>tad</em></a></td>
<td><a class="reference internal" href="temper.html"><em>temper</em></a></td> <td><a class="reference internal" href="temper.html"><em>temper</em></a></td>
<td><a class="reference internal" href="thermo.html"><em>thermo</em></a></td> <td><a class="reference internal" href="thermo.html"><em>thermo</em></a></td>
<td><a class="reference internal" href="thermo_modify.html"><em>thermo_modify</em></a></td> <td><a class="reference internal" href="thermo_modify.html"><em>thermo_modify</em></a></td>
<td><a class="reference internal" href="thermo_style.html"><em>thermo_style</em></a></td>
</tr> </tr>
<tr class="row-odd"><td><a class="reference internal" href="timer.html"><em>timer</em></a></td> <tr class="row-odd"><td><a class="reference internal" href="thermo_style.html"><em>thermo_style</em></a></td>
<td><a class="reference internal" href="timer.html"><em>timer</em></a></td>
<td><a class="reference internal" href="timestep.html"><em>timestep</em></a></td> <td><a class="reference internal" href="timestep.html"><em>timestep</em></a></td>
<td><a class="reference internal" href="uncompute.html"><em>uncompute</em></a></td> <td><a class="reference internal" href="uncompute.html"><em>uncompute</em></a></td>
<td><a class="reference internal" href="undump.html"><em>undump</em></a></td> <td><a class="reference internal" href="undump.html"><em>undump</em></a></td>
<td><a class="reference internal" href="unfix.html"><em>unfix</em></a></td> <td><a class="reference internal" href="unfix.html"><em>unfix</em></a></td>
<td><a class="reference internal" href="units.html"><em>units</em></a></td>
</tr> </tr>
<tr class="row-even"><td><a class="reference internal" href="variable.html"><em>variable</em></a></td> <tr class="row-even"><td><a class="reference internal" href="units.html"><em>units</em></a></td>
<td><a class="reference internal" href="variable.html"><em>variable</em></a></td>
<td><a class="reference internal" href="velocity.html"><em>velocity</em></a></td> <td><a class="reference internal" href="velocity.html"><em>velocity</em></a></td>
<td><a class="reference internal" href="write_data.html"><em>write_data</em></a></td> <td><a class="reference internal" href="write_data.html"><em>write_data</em></a></td>
<td><a class="reference internal" href="write_dump.html"><em>write_dump</em></a></td> <td><a class="reference internal" href="write_dump.html"><em>write_dump</em></a></td>
<td><a class="reference internal" href="write_restart.html"><em>write_restart</em></a></td> <td><a class="reference internal" href="write_restart.html"><em>write_restart</em></a></td>
<td>&nbsp;</td>
</tr> </tr>
</tbody> </tbody>
</table> </table>

1
doc/Section_commands.txt
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@ -375,6 +375,7 @@ in the command's documentation.
"balance"_balance.html, "balance"_balance.html,
"bond_coeff"_bond_coeff.html, "bond_coeff"_bond_coeff.html,
"bond_style"_bond_style.html, "bond_style"_bond_style.html,
"bond_write"_bond_write.html,
"boundary"_boundary.html, "boundary"_boundary.html,
"box"_box.html, "box"_box.html,
"change_box"_change_box.html, "change_box"_change_box.html,

66
doc/_sources/Section_commands.txt
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@ -400,39 +400,39 @@ included when LAMMPS was built. Not all packages are included in a
default LAMMPS build. These dependencies are listed as Restrictions default LAMMPS build. These dependencies are listed as Restrictions
in the command's documentation. in the command's documentation.
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`angle_coeff <angle_coeff>` | :doc:`angle_style <angle_style>` | :doc:`atom_modify <atom_modify>` | :doc:`atom_style <atom_style>` | :doc:`balance <balance>` | :doc:`bond_coeff <bond_coeff>` | | :doc:`angle_coeff <angle_coeff>` | :doc:`angle_style <angle_style>` | :doc:`atom_modify <atom_modify>` | :doc:`atom_style <atom_style>` | :doc:`balance <balance>` | :doc:`bond_coeff <bond_coeff>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`bond_style <bond_style>` | :doc:`boundary <boundary>` | :doc:`box <box>` | :doc:`change_box <change_box>` | :doc:`clear <clear>` | :doc:`comm_modify <comm_modify>` | | :doc:`bond_style <bond_style>` | :doc:`bond_write <bond_write>` | :doc:`boundary <boundary>` | :doc:`box <box>` | :doc:`change_box <change_box>` | :doc:`clear <clear>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`comm_style <comm_style>` | :doc:`compute <compute>` | :doc:`compute_modify <compute_modify>` | :doc:`create_atoms <create_atoms>` | :doc:`create_bonds <create_bonds>` | :doc:`create_box <create_box>` | | :doc:`comm_modify <comm_modify>` | :doc:`comm_style <comm_style>` | :doc:`compute <compute>` | :doc:`compute_modify <compute_modify>` | :doc:`create_atoms <create_atoms>` | :doc:`create_bonds <create_bonds>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`delete_atoms <delete_atoms>` | :doc:`delete_bonds <delete_bonds>` | :doc:`dielectric <dielectric>` | :doc:`dihedral_coeff <dihedral_coeff>` | :doc:`dihedral_style <dihedral_style>` | :doc:`dimension <dimension>` | | :doc:`create_box <create_box>` | :doc:`delete_atoms <delete_atoms>` | :doc:`delete_bonds <delete_bonds>` | :doc:`dielectric <dielectric>` | :doc:`dihedral_coeff <dihedral_coeff>` | :doc:`dihedral_style <dihedral_style>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`displace_atoms <displace_atoms>` | :doc:`dump <dump>` | :doc:`dump image <dump_image>` | :doc:`dump_modify <dump_modify>` | :doc:`dump movie <dump_image>` | :doc:`echo <echo>` | | :doc:`dimension <dimension>` | :doc:`displace_atoms <displace_atoms>` | :doc:`dump <dump>` | :doc:`dump image <dump_image>` | :doc:`dump_modify <dump_modify>` | :doc:`dump movie <dump_image>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`fix <fix>` | :doc:`fix_modify <fix_modify>` | :doc:`group <group>` | :doc:`if <if>` | :doc:`info <info>` | :doc:`improper_coeff <improper_coeff>` | | :doc:`echo <echo>` | :doc:`fix <fix>` | :doc:`fix_modify <fix_modify>` | :doc:`group <group>` | :doc:`if <if>` | :doc:`info <info>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`improper_style <improper_style>` | :doc:`include <include>` | :doc:`jump <jump>` | :doc:`kspace_modify <kspace_modify>` | :doc:`kspace_style <kspace_style>` | :doc:`label <label>` | | :doc:`improper_coeff <improper_coeff>` | :doc:`improper_style <improper_style>` | :doc:`include <include>` | :doc:`jump <jump>` | :doc:`kspace_modify <kspace_modify>` | :doc:`kspace_style <kspace_style>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`lattice <lattice>` | :doc:`log <log>` | :doc:`mass <mass>` | :doc:`minimize <minimize>` | :doc:`min_modify <min_modify>` | :doc:`min_style <min_style>` | | :doc:`label <label>` | :doc:`lattice <lattice>` | :doc:`log <log>` | :doc:`mass <mass>` | :doc:`minimize <minimize>` | :doc:`min_modify <min_modify>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`molecule <molecule>` | :doc:`neb <neb>` | :doc:`neigh_modify <neigh_modify>` | :doc:`neighbor <neighbor>` | :doc:`newton <newton>` | :doc:`next <next>` | | :doc:`min_style <min_style>` | :doc:`molecule <molecule>` | :doc:`neb <neb>` | :doc:`neigh_modify <neigh_modify>` | :doc:`neighbor <neighbor>` | :doc:`newton <newton>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`package <package>` | :doc:`pair_coeff <pair_coeff>` | :doc:`pair_modify <pair_modify>` | :doc:`pair_style <pair_style>` | :doc:`pair_write <pair_write>` | :doc:`partition <partition>` | | :doc:`next <next>` | :doc:`package <package>` | :doc:`pair_coeff <pair_coeff>` | :doc:`pair_modify <pair_modify>` | :doc:`pair_style <pair_style>` | :doc:`pair_write <pair_write>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`prd <prd>` | :doc:`print <print>` | :doc:`processors <processors>` | :doc:`python <python>` | :doc:`quit <quit>` | :doc:`read_data <read_data>` | | :doc:`partition <partition>` | :doc:`prd <prd>` | :doc:`print <print>` | :doc:`processors <processors>` | :doc:`python <python>` | :doc:`quit <quit>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`read_dump <read_dump>` | :doc:`read_restart <read_restart>` | :doc:`region <region>` | :doc:`replicate <replicate>` | :doc:`rerun <rerun>` | :doc:`reset_timestep <reset_timestep>` | | :doc:`read_data <read_data>` | :doc:`read_dump <read_dump>` | :doc:`read_restart <read_restart>` | :doc:`region <region>` | :doc:`replicate <replicate>` | :doc:`rerun <rerun>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`restart <restart>` | :doc:`run <run>` | :doc:`run_style <run_style>` | :doc:`set <set>` | :doc:`shell <shell>` | :doc:`special_bonds <special_bonds>` | | :doc:`reset_timestep <reset_timestep>` | :doc:`restart <restart>` | :doc:`run <run>` | :doc:`run_style <run_style>` | :doc:`set <set>` | :doc:`shell <shell>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`suffix <suffix>` | :doc:`tad <tad>` | :doc:`temper <temper>` | :doc:`thermo <thermo>` | :doc:`thermo_modify <thermo_modify>` | :doc:`thermo_style <thermo_style>` | | :doc:`special_bonds <special_bonds>` | :doc:`suffix <suffix>` | :doc:`tad <tad>` | :doc:`temper <temper>` | :doc:`thermo <thermo>` | :doc:`thermo_modify <thermo_modify>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`timer <timer>` | :doc:`timestep <timestep>` | :doc:`uncompute <uncompute>` | :doc:`undump <undump>` | :doc:`unfix <unfix>` | :doc:`units <units>` | | :doc:`thermo_style <thermo_style>` | :doc:`timer <timer>` | :doc:`timestep <timestep>` | :doc:`uncompute <uncompute>` | :doc:`undump <undump>` | :doc:`unfix <unfix>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
| :doc:`variable <variable>` | :doc:`velocity <velocity>` | :doc:`write_data <write_data>` | :doc:`write_dump <write_dump>` | :doc:`write_restart <write_restart>` | | | :doc:`units <units>` | :doc:`variable <variable>` | :doc:`velocity <velocity>` | :doc:`write_data <write_data>` | :doc:`write_dump <write_dump>` | :doc:`write_restart <write_restart>` |
+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+ +----------------------------------------+----------------------------------------+------------------------------------+----------------------------------------+----------------------------------------+----------------------------------------+
These are additional commands in USER packages, which can be used if These are additional commands in USER packages, which can be used if
:ref:`LAMMPS is built with the appropriate package <start_3>`. :ref:`LAMMPS is built with the appropriate package <start_3>`.