diff --git a/doc/Section_tools.html b/doc/Section_tools.html
index c9468af1d7..4e1228a21d 100644
--- a/doc/Section_tools.html
+++ b/doc/Section_tools.html
@@ -56,7 +56,6 @@ own sub-directories with their own Makefiles.
 <LI><A HREF = "#ipp">ipp</A>
 <LI><A HREF = "#arc">lmp2arc</A>
 <LI><A HREF = "#cfg">lmp2cfg</A>
-<LI><A HREF = "#traj">lmp2traj</A>
 <LI><A HREF = "#vmd">lmp2vmd</A>
 <LI><A HREF = "#matlab">matlab</A>
 <LI><A HREF = "#micelle">micelle2d</A>
@@ -251,18 +250,6 @@ the README file for more information.
 </P>
 <HR>
 
-<H4><A NAME = "traj"></A>lmp2traj tool 
-</H4>
-<P>The lmp2traj sub-directory contains a tool for converting LAMMPS output
-files into 3 analysis files.  One file can be used to create contour
-maps of the atom positions over the course of the simulation. The
-other two files provide density profiles and dipole moments.  See the
-README file for more information.
-</P>
-<P>This tool was written by Ara Kooser at Sandia (askoose at sandia.gov).
-</P>
-<HR>
-
 <H4><A NAME = "vmd"></A>lmp2vmd tool 
 </H4>
 <P>The lmp2vmd sub-directory contains a README.txt file that describes
diff --git a/doc/Section_tools.txt b/doc/Section_tools.txt
index b1aff56261..5c3f7bf6a1 100644
--- a/doc/Section_tools.txt
+++ b/doc/Section_tools.txt
@@ -52,7 +52,6 @@ own sub-directories with their own Makefiles.
 "ipp"_#ipp
 "lmp2arc"_#arc
 "lmp2cfg"_#cfg
-"lmp2traj"_#traj
 "lmp2vmd"_#vmd
 "matlab"_#matlab
 "micelle2d"_#micelle
@@ -247,18 +246,6 @@ This tool was written by Ara Kooser at Sandia (askoose at sandia.gov).
 
 :line
 
-lmp2traj tool :h4,link(traj)
-
-The lmp2traj sub-directory contains a tool for converting LAMMPS output
-files into 3 analysis files.  One file can be used to create contour
-maps of the atom positions over the course of the simulation. The
-other two files provide density profiles and dipole moments.  See the
-README file for more information.
-
-This tool was written by Ara Kooser at Sandia (askoose at sandia.gov).
-
-:line
-
 lmp2vmd tool :h4,link(vmd)
 
 The lmp2vmd sub-directory contains a README.txt file that describes