diff --git a/doc/Manual.html b/doc/Manual.html index 9f5747a5f0..1ec6b50285 100644 --- a/doc/Manual.html +++ b/doc/Manual.html @@ -8,7 +8,7 @@ - LAMMPS Documentation — LAMMPS 17 Dec 2015 documentation + LAMMPS Documentation — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -135,7 +135,7 @@

LAMMPS Documentation

-

17 Dec 2015 version

+

19 Dec 2015 version

Version info:

@@ -422,7 +422,7 @@ it gives quick access to documentation for all LAMMPS commands.

@@ -338,7 +338,7 @@ occurs, the faster your simulation will run. @@ -367,7 +367,7 @@ storage by a single MPI process. @@ -428,7 +428,7 @@ supported.

@@ -586,7 +586,7 @@ change in the future.

@@ -303,7 +303,7 @@ MPI tasks to a (multi-core) socket, should solve this issue. @@ -205,7 +205,7 @@ of a run. On most machines for reasonable problem sizes, it will be a @@ -230,7 +230,7 @@ Fischer, Gao, Guo, Ha, et al, J Phys Chem, 102, 3586 (1998).

@@ -257,7 +257,7 @@ for more info on packages.

@@ -245,7 +245,7 @@ set, either in the input script or in a data file.

@@ -215,7 +215,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/angle_cosine_delta.html b/doc/angle_cosine_delta.html index ac0a5262ff..1ab39888c1 100644 --- a/doc/angle_cosine_delta.html +++ b/doc/angle_cosine_delta.html @@ -8,7 +8,7 @@ - angle_style cosine/delta command — LAMMPS 17 Dec 2015 documentation + angle_style cosine/delta command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -219,7 +219,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/angle_cosine_periodic.html b/doc/angle_cosine_periodic.html index d804771766..f484e1782f 100644 --- a/doc/angle_cosine_periodic.html +++ b/doc/angle_cosine_periodic.html @@ -8,7 +8,7 @@ - angle_style cosine/periodic command — LAMMPS 17 Dec 2015 documentation + angle_style cosine/periodic command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -229,7 +229,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/angle_cosine_shift.html b/doc/angle_cosine_shift.html index cc3957f2bb..17d67ff2f7 100644 --- a/doc/angle_cosine_shift.html +++ b/doc/angle_cosine_shift.html @@ -8,7 +8,7 @@ - angle_style cosine/shift command — LAMMPS 17 Dec 2015 documentation + angle_style cosine/shift command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -220,7 +220,7 @@ section for more info on packages.

@@ -231,7 +231,7 @@ section for more info on packages.

@@ -219,7 +219,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/angle_dipole.html b/doc/angle_dipole.html index 66cdaf915b..21639fc3e8 100644 --- a/doc/angle_dipole.html +++ b/doc/angle_dipole.html @@ -8,7 +8,7 @@ - angle_style dipole command — LAMMPS 17 Dec 2015 documentation + angle_style dipole command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -258,7 +258,7 @@ Clarendon Press, Oxford, 1987.

@@ -216,7 +216,7 @@ section for more info on packages.

@@ -215,7 +215,7 @@ section for more info on packages.

@@ -224,7 +224,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/angle_hybrid.html b/doc/angle_hybrid.html index a7559b6201..75d9c4915a 100644 --- a/doc/angle_hybrid.html +++ b/doc/angle_hybrid.html @@ -8,7 +8,7 @@ - angle_style hybrid command — LAMMPS 17 Dec 2015 documentation + angle_style hybrid command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -240,7 +240,7 @@ file, you need to re-specify angle_coeff commands.

@@ -184,7 +184,7 @@ if triplets of angle atoms were listed in the data file read by the @@ -222,7 +222,7 @@ section for more info on packages.

@@ -208,7 +208,7 @@ USER-CG-CMM package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/angle_style.html b/doc/angle_style.html index dbe71cd6b0..cb70919118 100644 --- a/doc/angle_style.html +++ b/doc/angle_style.html @@ -8,7 +8,7 @@ - angle_style command — LAMMPS 17 Dec 2015 documentation + angle_style command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -243,7 +243,7 @@ package.

@@ -293,7 +293,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/atom_modify.html b/doc/atom_modify.html index c5c651be38..345973fede 100644 --- a/doc/atom_modify.html +++ b/doc/atom_modify.html @@ -8,7 +8,7 @@ - atom_modify command — LAMMPS 17 Dec 2015 documentation + atom_modify command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -309,7 +309,7 @@ cutoff will be used to set the bin size.

@@ -448,7 +448,7 @@ only enabled if LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/balance.html b/doc/balance.html index 619f12936e..f50d111690 100644 --- a/doc/balance.html +++ b/doc/balance.html @@ -8,7 +8,7 @@ - balance command — LAMMPS 17 Dec 2015 documentation + balance command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -508,7 +508,7 @@ appear in dimstr for the shift style.

@@ -418,7 +418,7 @@ Particuology, 6, 455 (2008).

@@ -222,7 +222,7 @@ for more info on packages.

@@ -242,7 +242,7 @@ either in the input script or in a data file.

@@ -230,7 +230,7 @@ style. LAMMPS will issue a warning it that’s not the case.

@@ -231,7 +231,7 @@ style. LAMMPS will issue a warning it that’s not the case.

@@ -220,7 +220,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/bond_harmonic_shift.html b/doc/bond_harmonic_shift.html index 6875cb4aa1..dc82f83bb9 100644 --- a/doc/bond_harmonic_shift.html +++ b/doc/bond_harmonic_shift.html @@ -8,7 +8,7 @@ - bond_style harmonic/shift command — LAMMPS 17 Dec 2015 documentation + bond_style harmonic/shift command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -222,7 +222,7 @@ section for more info on packages.

@@ -223,7 +223,7 @@ section for more info on packages.

@@ -223,7 +223,7 @@ file, you need to re-specify bond_coeff commands.

@@ -218,7 +218,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/bond_none.html b/doc/bond_none.html index 0361cf6020..0b0f671416 100644 --- a/doc/bond_none.html +++ b/doc/bond_none.html @@ -8,7 +8,7 @@ - bond_style none command — LAMMPS 17 Dec 2015 documentation + bond_style none command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -184,7 +184,7 @@ pairs of bonded atoms were listed in the data file read by the @@ -220,7 +220,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/bond_quartic.html b/doc/bond_quartic.html index 893316add7..2082898afb 100644 --- a/doc/bond_quartic.html +++ b/doc/bond_quartic.html @@ -8,7 +8,7 @@ - bond_style quartic command — LAMMPS 17 Dec 2015 documentation + bond_style quartic command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -252,7 +252,7 @@ dihedral, etc) cannot be used with quartic bonds.

@@ -251,7 +251,7 @@ package.

@@ -290,7 +290,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/boundary.html b/doc/boundary.html index 4a71c85a88..986b025415 100644 --- a/doc/boundary.html +++ b/doc/boundary.html @@ -8,7 +8,7 @@ - boundary command — LAMMPS 17 Dec 2015 documentation + boundary command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -248,7 +248,7 @@ of lost atoms.

@@ -212,7 +212,7 @@ error.

@@ -466,7 +466,7 @@ change_box command is issued, so long as an var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/clear.html b/doc/clear.html index c23347927e..b57e9639a2 100644 --- a/doc/clear.html +++ b/doc/clear.html @@ -8,7 +8,7 @@ - clear command — LAMMPS 17 Dec 2015 documentation + clear command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -192,7 +192,7 @@ input script variables (v @@ -307,7 +307,7 @@ cutoff = pairwise force cutoff + neighbor skin.

@@ -217,7 +217,7 @@ commands. The decomposition can be changed via the @@ -395,7 +395,7 @@ section of var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_ackland_atom.html b/doc/compute_ackland_atom.html index 382fa5c09b..93aafec670 100644 --- a/doc/compute_ackland_atom.html +++ b/doc/compute_ackland_atom.html @@ -8,7 +8,7 @@ - compute ackland/atom command — LAMMPS 17 Dec 2015 documentation + compute ackland/atom command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -218,7 +218,7 @@ integers defined above.

@@ -226,7 +226,7 @@ be in energy units. @@ -236,7 +236,7 @@ mass-velocity-distance units @@ -216,7 +216,7 @@ well-defined basal plane.

@@ -241,7 +241,7 @@ options.

@@ -234,7 +234,7 @@ output for eng will be in energy var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_centro_atom.html b/doc/compute_centro_atom.html index a0bad8e4f3..627b4cd46d 100644 --- a/doc/compute_centro_atom.html +++ b/doc/compute_centro_atom.html @@ -8,7 +8,7 @@ - compute centro/atom command — LAMMPS 17 Dec 2015 documentation + compute centro/atom command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -263,7 +263,7 @@ of 12.

@@ -719,7 +719,7 @@ the restarted simulation begins.

@@ -226,7 +226,7 @@ LAMMPS output options.

@@ -238,7 +238,7 @@ above.

@@ -210,7 +210,7 @@ distance units.

@@ -234,7 +234,7 @@ distance units.

@@ -203,7 +203,7 @@ above.

@@ -242,7 +242,7 @@ explained above.

@@ -206,7 +206,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_dihedral_local.html b/doc/compute_dihedral_local.html index 76add48836..64e88a0b1a 100644 --- a/doc/compute_dihedral_local.html +++ b/doc/compute_dihedral_local.html @@ -8,7 +8,7 @@ - compute dihedral/local command — LAMMPS 17 Dec 2015 documentation + compute dihedral/local command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -219,7 +219,7 @@ options.

@@ -208,7 +208,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_displace_atom.html b/doc/compute_displace_atom.html index d085b1cd31..b7eb3fbd19 100644 --- a/doc/compute_displace_atom.html +++ b/doc/compute_displace_atom.html @@ -8,7 +8,7 @@ - compute displace/atom command — LAMMPS 17 Dec 2015 documentation + compute displace/atom command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -222,7 +222,7 @@ options.

@@ -216,7 +216,7 @@ particles.

@@ -208,7 +208,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_erotate_sphere.html b/doc/compute_erotate_sphere.html index 62f60b57a2..02217eeafa 100644 --- a/doc/compute_erotate_sphere.html +++ b/doc/compute_erotate_sphere.html @@ -8,7 +8,7 @@ - compute erotate/sphere command — LAMMPS 17 Dec 2015 documentation + compute erotate/sphere command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -208,7 +208,7 @@ contribute to the rotational energy.

@@ -207,7 +207,7 @@ LAMMPS output options.

@@ -214,7 +214,7 @@ for more info on packages.

@@ -413,7 +413,7 @@ Liquids, Oxford University Press (1987)

@@ -261,7 +261,7 @@ The ewald and pppm styles do.

@@ -222,7 +222,7 @@ distance^2 units re @@ -253,7 +253,7 @@ represented by the formula above.

@@ -336,7 +336,7 @@ print "average conductivity: $k[W/mK] @ $T K, ${ndens} /A^3" @@ -262,7 +262,7 @@ options.

@@ -219,7 +219,7 @@ options.

@@ -235,7 +235,7 @@ mass*distance^2 units var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_ke.html b/doc/compute_ke.html index 65b5da6d11..ea8ab41a2f 100644 --- a/doc/compute_ke.html +++ b/doc/compute_ke.html @@ -8,7 +8,7 @@ - compute ke command — LAMMPS 17 Dec 2015 documentation + compute ke command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -211,7 +211,7 @@ scalar value will be in energy < @@ -200,7 +200,7 @@ LAMMPS output options.

@@ -225,7 +225,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_ke_eff.html b/doc/compute_ke_eff.html index cbbe46d9cb..0b939efb32 100644 --- a/doc/compute_ke_eff.html +++ b/doc/compute_ke_eff.html @@ -8,7 +8,7 @@ - compute ke/eff command — LAMMPS 17 Dec 2015 documentation + compute ke/eff command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -223,7 +223,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_ke_rigid.html b/doc/compute_ke_rigid.html index 62910ced6a..05e5b3dae9 100644 --- a/doc/compute_ke_rigid.html +++ b/doc/compute_ke_rigid.html @@ -8,7 +8,7 @@ - compute ke/rigid command — LAMMPS 17 Dec 2015 documentation + compute ke/rigid command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -206,7 +206,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_meso_e_atom.html b/doc/compute_meso_e_atom.html index 11eb24cdf7..51ddfef994 100644 --- a/doc/compute_meso_e_atom.html +++ b/doc/compute_meso_e_atom.html @@ -8,7 +8,7 @@ - compute meso_e/atom command — LAMMPS 17 Dec 2015 documentation + compute meso_e/atom command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -203,7 +203,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_meso_rho_atom.html b/doc/compute_meso_rho_atom.html index b650d453bd..892a3536b6 100644 --- a/doc/compute_meso_rho_atom.html +++ b/doc/compute_meso_rho_atom.html @@ -8,7 +8,7 @@ - compute meso_rho/atom command — LAMMPS 17 Dec 2015 documentation + compute meso_rho/atom command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -203,7 +203,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_meso_t_atom.html b/doc/compute_meso_t_atom.html index 180ed3f6cc..4623496507 100644 --- a/doc/compute_meso_t_atom.html +++ b/doc/compute_meso_t_atom.html @@ -8,7 +8,7 @@ - compute meso_t/atom command — LAMMPS 17 Dec 2015 documentation + compute meso_t/atom command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -204,7 +204,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_modify.html b/doc/compute_modify.html index a3d9895689..0e8a751e45 100644 --- a/doc/compute_modify.html +++ b/doc/compute_modify.html @@ -8,7 +8,7 @@ - compute_modify command — LAMMPS 17 Dec 2015 documentation + compute_modify command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -224,7 +224,7 @@ defined with no extra keywords; otherwise it is no.

@@ -265,7 +265,7 @@ distance^2 units. var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_msd_chunk.html b/doc/compute_msd_chunk.html index 8d826ccaad..d574bbf718 100644 --- a/doc/compute_msd_chunk.html +++ b/doc/compute_msd_chunk.html @@ -8,7 +8,7 @@ - compute msd/chunk command — LAMMPS 17 Dec 2015 documentation + compute msd/chunk command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -269,7 +269,7 @@ distance^2 units. var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_msd_nongauss.html b/doc/compute_msd_nongauss.html index 0117f374ca..2084f3f225 100644 --- a/doc/compute_msd_nongauss.html +++ b/doc/compute_msd_nongauss.html @@ -8,7 +8,7 @@ - compute msd/nongauss command — LAMMPS 17 Dec 2015 documentation + compute msd/nongauss command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -226,7 +226,7 @@ was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_omega_chunk.html b/doc/compute_omega_chunk.html index 541cd7c5cb..5a6b300110 100644 --- a/doc/compute_omega_chunk.html +++ b/doc/compute_omega_chunk.html @@ -8,7 +8,7 @@ - compute omega/chunk command — LAMMPS 17 Dec 2015 documentation + compute omega/chunk command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -236,7 +236,7 @@ velocity/distance units @@ -266,7 +266,7 @@ options.

@@ -230,7 +230,7 @@ see the doc page for the pair style for details.

@@ -264,7 +264,7 @@ output for eng will be in energy var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_pe.html b/doc/compute_pe.html index 0cc23e044c..440246fd32 100644 --- a/doc/compute_pe.html +++ b/doc/compute_pe.html @@ -8,7 +8,7 @@ - compute pe command — LAMMPS 17 Dec 2015 documentation + compute pe command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -245,7 +245,7 @@ scalar value will be in energy < @@ -236,7 +236,7 @@ LAMMPS output options.

@@ -208,7 +208,7 @@ viscoelasticity model for peridynamics”, Sandia National Lab Report, @@ -277,7 +277,7 @@ options.

@@ -310,7 +310,7 @@ units for q, etc.

@@ -257,7 +257,7 @@ unitless or in the units discussed above.

@@ -286,7 +286,7 @@ specified attribute.

@@ -302,7 +302,7 @@ change from zero to one at the location of the spike in g(r).

@@ -327,7 +327,7 @@ quantities being reduced are in.

@@ -330,7 +330,7 @@ Volume C: Mathematical and Chemical Tables, 554-95 (2004).

@@ -256,7 +256,7 @@ input quantities are in.

@@ -201,7 +201,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_smd_damage.html b/doc/compute_smd_damage.html index 25bc28d8e7..4211c1f771 100644 --- a/doc/compute_smd_damage.html +++ b/doc/compute_smd_damage.html @@ -8,7 +8,7 @@ - compute smd/damage command — LAMMPS 17 Dec 2015 documentation + compute smd/damage command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -198,7 +198,7 @@ section for more info.

@@ -205,7 +205,7 @@ section for more info.

@@ -197,7 +197,7 @@ updated Lagrangian or total Lagrangian SPH pair styles.

@@ -200,7 +200,7 @@ updated Lagrangian or total Lagrangian SPH pair styles.

@@ -200,7 +200,7 @@ updated Lagrangian or total Lagrangian SPH pair styles.

@@ -199,7 +199,7 @@ section for more info.

@@ -202,7 +202,7 @@ total Lagrangian SPH pair style.

@@ -203,7 +203,7 @@ section for more info.

@@ -199,7 +199,7 @@ section for more info.

@@ -201,7 +201,7 @@ section for more info.

@@ -202,7 +202,7 @@ section for more info.

@@ -200,7 +200,7 @@ section for more info.

@@ -201,7 +201,7 @@ section for more info.

@@ -204,7 +204,7 @@ section for more info.

@@ -198,7 +198,7 @@ section for more info. This compute can only be used for particles which interac @@ -200,7 +200,7 @@ section for more info. This compute can only be used for particles which interac @@ -200,7 +200,7 @@ section for more info. This compute can only be used for particles which interac @@ -203,7 +203,7 @@ section for more info. This compute can only be used for particles which interac @@ -202,7 +202,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_sna_atom.html b/doc/compute_sna_atom.html index fa2d906f76..f510f3c48a 100644 --- a/doc/compute_sna_atom.html +++ b/doc/compute_sna_atom.html @@ -8,7 +8,7 @@ - compute sna/atom command — LAMMPS 17 Dec 2015 documentation + compute sna/atom command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -362,7 +362,7 @@ of Angular Momentum, World Scientific, Singapore (1987).

@@ -295,7 +295,7 @@ options.

@@ -235,7 +235,7 @@ heat/flux*_compute_heat_flux.html

@@ -253,7 +253,7 @@ vector values will be in energy @@ -290,7 +290,7 @@ shape attribute.

@@ -363,7 +363,7 @@ system (2 or 3), and cdof = 0.0.

@@ -235,7 +235,7 @@ vector values will be in energy @@ -254,7 +254,7 @@ be used which generate new molecules or atoms during a simulation.

@@ -276,7 +276,7 @@ vector values will be in energy @@ -216,7 +216,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_temp_drude.html b/doc/compute_temp_drude.html index ffc855420b..b4420c9e69 100644 --- a/doc/compute_temp_drude.html +++ b/doc/compute_temp_drude.html @@ -8,7 +8,7 @@ - compute temp/drude command — LAMMPS 17 Dec 2015 documentation + compute temp/drude command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -224,7 +224,7 @@ assumed to be constant for the duration of the run unless the @@ -241,7 +241,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_temp_partial.html b/doc/compute_temp_partial.html index e2774d0bf6..60ec67eb4b 100644 --- a/doc/compute_temp_partial.html +++ b/doc/compute_temp_partial.html @@ -8,7 +8,7 @@ - compute temp/partial command — LAMMPS 17 Dec 2015 documentation + compute temp/partial command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -255,7 +255,7 @@ vector values will be in energy @@ -318,7 +318,7 @@ will be for most thermostats.

@@ -256,7 +256,7 @@ vector values will be in energy @@ -248,7 +248,7 @@ vector values will be in energy @@ -208,7 +208,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_temp_rotate.html b/doc/compute_temp_rotate.html index a3f303142c..1737b75bf6 100644 --- a/doc/compute_temp_rotate.html +++ b/doc/compute_temp_rotate.html @@ -8,7 +8,7 @@ - compute temp/rotate command — LAMMPS 17 Dec 2015 documentation + compute temp/rotate command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -234,7 +234,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_temp_sphere.html b/doc/compute_temp_sphere.html index 0a6bffaa67..676afa7b1c 100644 --- a/doc/compute_temp_sphere.html +++ b/doc/compute_temp_sphere.html @@ -8,7 +8,7 @@ - compute temp/sphere command — LAMMPS 17 Dec 2015 documentation + compute temp/sphere command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -278,7 +278,7 @@ particles with radius = 0.0.

@@ -273,7 +273,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_torque_chunk.html b/doc/compute_torque_chunk.html index 5786aaf120..8781850b58 100644 --- a/doc/compute_torque_chunk.html +++ b/doc/compute_torque_chunk.html @@ -8,7 +8,7 @@ - compute torque/chunk command — LAMMPS 17 Dec 2015 documentation + compute torque/chunk command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -235,7 +235,7 @@ force-distance units var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_vacf.html b/doc/compute_vacf.html index 9526c8f4aa..c55b152793 100644 --- a/doc/compute_vacf.html +++ b/doc/compute_vacf.html @@ -8,7 +8,7 @@ - compute vacf command — LAMMPS 17 Dec 2015 documentation + compute vacf command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -225,7 +225,7 @@ velocity^2 units. var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_vcm_chunk.html b/doc/compute_vcm_chunk.html index 8202229db8..3e8e7bff2b 100644 --- a/doc/compute_vcm_chunk.html +++ b/doc/compute_vcm_chunk.html @@ -8,7 +8,7 @@ - compute vcm/chunk command — LAMMPS 17 Dec 2015 documentation + compute vcm/chunk command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -222,7 +222,7 @@ velocity units.

@@ -314,7 +314,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/compute_xrd.html b/doc/compute_xrd.html index 4b0c520962..0a3b327b64 100644 --- a/doc/compute_xrd.html +++ b/doc/compute_xrd.html @@ -8,7 +8,7 @@ - compute xrd command — LAMMPS 17 Dec 2015 documentation + compute xrd command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -356,7 +356,7 @@ Volume C: Mathematical and Chemical Tables, 249-429 (2004).

@@ -460,7 +460,7 @@ random, and units = lattice.

@@ -258,7 +258,7 @@ molecule template files via the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/create_box.html b/doc/create_box.html index 0a8cd0e511..6d166c90b4 100644 --- a/doc/create_box.html +++ b/doc/create_box.html @@ -8,7 +8,7 @@ - create_box command — LAMMPS 17 Dec 2015 documentation + create_box command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -293,7 +293,7 @@ been previously defined to use this command.

@@ -295,7 +295,7 @@ using molecule template files via the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/delete_bonds.html b/doc/delete_bonds.html index 9a8e36a9c4..48266c162d 100644 --- a/doc/delete_bonds.html +++ b/doc/delete_bonds.html @@ -8,7 +8,7 @@ - delete_bonds command — LAMMPS 17 Dec 2015 documentation + delete_bonds command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -294,7 +294,7 @@ which case you probably should be recomputing the weighting list.

@@ -199,7 +199,7 @@ details.

@@ -252,7 +252,7 @@ Fischer, Gao, Guo, Ha, et al, J Phys Chem B, 102, 3586 (1998).

@@ -315,7 +315,7 @@ section for more info on packages.

@@ -256,7 +256,7 @@ set, either in the input script or in a data file.

@@ -229,7 +229,7 @@ section for more info on packages.

@@ -222,7 +222,7 @@ section for more info on packages.

@@ -230,7 +230,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/dihedral_helix.html b/doc/dihedral_helix.html index e1aabb0b2f..724ce188e8 100644 --- a/doc/dihedral_helix.html +++ b/doc/dihedral_helix.html @@ -8,7 +8,7 @@ - dihedral_style helix command — LAMMPS 17 Dec 2015 documentation + dihedral_style helix command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -225,7 +225,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/dihedral_hybrid.html b/doc/dihedral_hybrid.html index 6a35b3e733..df1625a2aa 100644 --- a/doc/dihedral_hybrid.html +++ b/doc/dihedral_hybrid.html @@ -8,7 +8,7 @@ - dihedral_style hybrid command — LAMMPS 17 Dec 2015 documentation + dihedral_style hybrid command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -241,7 +241,7 @@ restart file, you need to re-specify dihedral_coeff commands.

@@ -218,7 +218,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/dihedral_nharmonic.html b/doc/dihedral_nharmonic.html index b33490ac85..00a50345ab 100644 --- a/doc/dihedral_nharmonic.html +++ b/doc/dihedral_nharmonic.html @@ -8,7 +8,7 @@ - dihedral_style nharmonic command — LAMMPS 17 Dec 2015 documentation + dihedral_style nharmonic command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -219,7 +219,7 @@ section for more info on packages.

@@ -184,7 +184,7 @@ data file read by the re @@ -227,7 +227,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/dihedral_quadratic.html b/doc/dihedral_quadratic.html index d0be37a07d..539834b505 100644 --- a/doc/dihedral_quadratic.html +++ b/doc/dihedral_quadratic.html @@ -8,7 +8,7 @@ - dihedral_style quadratic command — LAMMPS 17 Dec 2015 documentation + dihedral_style quadratic command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -219,7 +219,7 @@ section for more info on packages.

@@ -262,7 +262,7 @@ a package.

@@ -342,7 +342,7 @@ section for more info on packages.

@@ -206,7 +206,7 @@ meaning their moment of inertia will be the same as in 3d.

@@ -289,7 +289,7 @@ attempted to be.

@@ -736,7 +736,7 @@ machines.

@@ -264,7 +264,7 @@ Comp. Phys. Comm. 185(6), 1546-1553 (2014) - @@ -693,7 +693,7 @@ mp4).

@@ -1011,7 +1011,7 @@ Divide each value by 255 to get the equivalent 0.0 to 1.0 value.

@@ -270,7 +270,7 @@ with a set of header files that are compatible with VMD 1.9 and 1.9.1 @@ -196,7 +196,7 @@ in place of this command.

@@ -415,7 +415,7 @@ The doc pages for individual fixes tell if it is part of a package.

@@ -432,7 +432,7 @@ parameters on the outermost rRESPA level.

@@ -431,7 +431,7 @@ This fix is not invoked during var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_addforce.html b/doc/fix_addforce.html index aaf6a2bcce..29a2bbe1de 100644 --- a/doc/fix_addforce.html +++ b/doc/fix_addforce.html @@ -8,7 +8,7 @@ - fix addforce command — LAMMPS 17 Dec 2015 documentation + fix addforce command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -312,7 +312,7 @@ system (the quantity being minimized), you MUST enable the @@ -235,7 +235,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_append_atoms.html b/doc/fix_append_atoms.html index 26d24e6a5b..ce2835ef10 100644 --- a/doc/fix_append_atoms.html +++ b/doc/fix_append_atoms.html @@ -8,7 +8,7 @@ - fix append/atoms command — LAMMPS 17 Dec 2015 documentation + fix append/atoms command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -257,7 +257,7 @@ added atoms are of type 1 unless the basis keyword is used.

@@ -400,7 +400,7 @@ fix_modify AtC output nvtFE 100 text @@ -323,7 +323,7 @@ L Zepeda-Ruiz, Phys. Rev. B, 85, 184203 (2012).

@@ -286,7 +286,7 @@ the run command. Thi @@ -554,7 +554,7 @@ title 1,2,3 = strings as described above.

@@ -449,7 +449,7 @@ output, title 1,2,3 = strings as described above, and prefactor = 1.0.

@@ -283,7 +283,7 @@ A.E. Likhtman, J. Chem. Phys. 133, 154103 (2010).

@@ -452,7 +452,7 @@ output, beyond = ignore, and title 1,2,3 = strings as described above.

@@ -533,7 +533,7 @@ output, and title 1,2,3 = strings as described above.

@@ -444,7 +444,7 @@ file output, and title 1,2,3 = strings as described above.

@@ -445,7 +445,7 @@ off settings for any input values.

@@ -262,7 +262,7 @@ the iteration count during the minimization.

@@ -499,7 +499,7 @@ style.

@@ -294,7 +294,7 @@ built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_bond_create.html b/doc/fix_bond_create.html index 52b005a6f5..21fa3d8078 100644 --- a/doc/fix_bond_create.html +++ b/doc/fix_bond_create.html @@ -8,7 +8,7 @@ - fix bond/create command — LAMMPS 17 Dec 2015 documentation + fix bond/create command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -391,7 +391,7 @@ prob = 1.0.

@@ -323,7 +323,7 @@ cannot use a dihedral or improper potential.

@@ -481,7 +481,7 @@ and if the tilt factor is not coupled to the barostat via keywords @@ -270,7 +270,7 @@ and tstat = NULL.

@@ -692,7 +692,7 @@ xy) that is shrink-wrapped via the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_deposit.html b/doc/fix_deposit.html index 6979abfbff..b7b534a645 100644 --- a/doc/fix_deposit.html +++ b/doc/fix_deposit.html @@ -8,7 +8,7 @@ - fix deposit command — LAMMPS 17 Dec 2015 documentation + fix deposit command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -415,7 +415,7 @@ and units = lattice.

@@ -212,7 +212,7 @@ the run command. Thi @@ -201,7 +201,7 @@ the Drude oscillator model, such as var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_drude_transform.html b/doc/fix_drude_transform.html index 07c27515ae..1351027dc2 100644 --- a/doc/fix_drude_transform.html +++ b/doc/fix_drude_transform.html @@ -8,7 +8,7 @@ - fix drude/transform/direct command — LAMMPS 17 Dec 2015 documentation + fix drude/transform/direct command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -313,7 +313,7 @@ to add a fix momentum command:

@@ -240,7 +240,7 @@ the run command. Thi @@ -294,7 +294,7 @@ was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_enforce2d.html b/doc/fix_enforce2d.html index 8fede8daaa..db994f61fb 100644 --- a/doc/fix_enforce2d.html +++ b/doc/fix_enforce2d.html @@ -8,7 +8,7 @@ - fix enforce2d command — LAMMPS 17 Dec 2015 documentation + fix enforce2d command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -215,7 +215,7 @@ invoked by the minimize var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_evaporate.html b/doc/fix_evaporate.html index 81d4068186..4cc91c6b58 100644 --- a/doc/fix_evaporate.html +++ b/doc/fix_evaporate.html @@ -8,7 +8,7 @@ - fix evaporate command — LAMMPS 17 Dec 2015 documentation + fix evaporate command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -245,7 +245,7 @@ was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_external.html b/doc/fix_external.html index 4df128a09f..d84d405ee3 100644 --- a/doc/fix_external.html +++ b/doc/fix_external.html @@ -8,7 +8,7 @@ - fix external command — LAMMPS 17 Dec 2015 documentation + fix external command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -288,7 +288,7 @@ system (the quantity being minimized), you MUST enable the @@ -229,7 +229,7 @@ this fix is applied.

@@ -471,7 +471,7 @@ Academic Press, London, 2002.

@@ -289,7 +289,7 @@ was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_gle.html b/doc/fix_gle.html index 1c33e2dec3..a2d6358d4f 100644 --- a/doc/fix_gle.html +++ b/doc/fix_gle.html @@ -8,7 +8,7 @@ - fix gle command — LAMMPS 17 Dec 2015 documentation + fix gle command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -287,7 +287,7 @@ was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_gravity.html b/doc/fix_gravity.html index b5ab057a9b..075db6db80 100644 --- a/doc/fix_gravity.html +++ b/doc/fix_gravity.html @@ -8,7 +8,7 @@ - fix gravity command — LAMMPS 17 Dec 2015 documentation + fix gravity command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -283,7 +283,7 @@ the run command. Thi @@ -270,7 +270,7 @@ the run command. Thi @@ -293,7 +293,7 @@ needs to use a different port number.

@@ -344,7 +344,7 @@ option for this fix.

@@ -233,7 +233,7 @@ environment.

@@ -456,7 +456,7 @@ types, tally = no, zero = no, gjf = no.

@@ -401,7 +401,7 @@ Phys Chem Lett, 2, 87-92 (2011).

@@ -256,7 +256,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_lb_fluid.html b/doc/fix_lb_fluid.html index 98d6283ebc..72dbb724f2 100644 --- a/doc/fix_lb_fluid.html +++ b/doc/fix_lb_fluid.html @@ -8,7 +8,7 @@ - fix lb/fluid command — LAMMPS 17 Dec 2015 documentation + fix lb/fluid command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -463,7 +463,7 @@ If walls are present, they are assumed to be stationary.

@@ -225,7 +225,7 @@ was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_lb_pc.html b/doc/fix_lb_pc.html index 6138240cff..1f1559049a 100644 --- a/doc/fix_lb_pc.html +++ b/doc/fix_lb_pc.html @@ -8,7 +8,7 @@ - fix lb/pc command — LAMMPS 17 Dec 2015 documentation + fix lb/pc command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -206,7 +206,7 @@ command.

@@ -295,7 +295,7 @@ by default.

@@ -230,7 +230,7 @@ used.

@@ -204,7 +204,7 @@ invoked by the minimize var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_meso.html b/doc/fix_meso.html index ce99c1cd1b..87206d8272 100644 --- a/doc/fix_meso.html +++ b/doc/fix_meso.html @@ -8,7 +8,7 @@ - fix meso command — LAMMPS 17 Dec 2015 documentation + fix meso command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -202,7 +202,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_meso_stationary.html b/doc/fix_meso_stationary.html index 831b8966fa..afdb8bdbc4 100644 --- a/doc/fix_meso_stationary.html +++ b/doc/fix_meso_stationary.html @@ -8,7 +8,7 @@ - fix meso/stationary command — LAMMPS 17 Dec 2015 documentation + fix meso/stationary command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -203,7 +203,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_modify.html b/doc/fix_modify.html index 4c021ac58f..2584d8d8b2 100644 --- a/doc/fix_modify.html +++ b/doc/fix_modify.html @@ -8,7 +8,7 @@ - fix_modify command — LAMMPS 17 Dec 2015 documentation + fix_modify command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -226,7 +226,7 @@ by fix, energy = no.

@@ -227,7 +227,7 @@ This fix is not invoked during var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_move.html b/doc/fix_move.html index 5af8db34f0..c26861551c 100644 --- a/doc/fix_move.html +++ b/doc/fix_move.html @@ -8,7 +8,7 @@ - fix move command — LAMMPS 17 Dec 2015 documentation + fix move command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -370,7 +370,7 @@ position and velocity of atoms on the outermost rRESPA level.

@@ -295,7 +295,7 @@ are calculated on the first step.

@@ -248,7 +248,7 @@ for more info on packages.

@@ -721,7 +721,7 @@ Martyna, J Phys A: Math Gen, 39, 5629 (2006).

@@ -295,7 +295,7 @@ Martyna, J Phys A: Math Gen, 39, 5629 (2006).

@@ -281,7 +281,7 @@ shape attribute.

@@ -279,7 +279,7 @@ be point particles.

@@ -357,7 +357,7 @@ plus the additional ones mentioned above.

@@ -304,7 +304,7 @@ shape attribute.

@@ -300,7 +300,7 @@ be point particles.

@@ -229,7 +229,7 @@ This fix is not invoked during var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_nve_asphere.html b/doc/fix_nve_asphere.html index 24e197d120..cda0b60f5e 100644 --- a/doc/fix_nve_asphere.html +++ b/doc/fix_nve_asphere.html @@ -8,7 +8,7 @@ - fix nve/asphere command — LAMMPS 17 Dec 2015 documentation + fix nve/asphere command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -228,7 +228,7 @@ shape attribute.

@@ -209,7 +209,7 @@ shape attribute.

@@ -208,7 +208,7 @@ point particles.

@@ -201,7 +201,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_nve_limit.html b/doc/fix_nve_limit.html index d4e771b950..3e5e0ef87d 100644 --- a/doc/fix_nve_limit.html +++ b/doc/fix_nve_limit.html @@ -8,7 +8,7 @@ - fix nve/limit command — LAMMPS 17 Dec 2015 documentation + fix nve/limit command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -239,7 +239,7 @@ the run command. Thi @@ -206,7 +206,7 @@ was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_nve_noforce.html b/doc/fix_nve_noforce.html index 7257a500c4..e3d486bdd4 100644 --- a/doc/fix_nve_noforce.html +++ b/doc/fix_nve_noforce.html @@ -8,7 +8,7 @@ - fix nve/noforce command — LAMMPS 17 Dec 2015 documentation + fix nve/noforce command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -207,7 +207,7 @@ This fix is not invoked during var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_nve_sphere.html b/doc/fix_nve_sphere.html index 0b8b42434e..cab18f2702 100644 --- a/doc/fix_nve_sphere.html +++ b/doc/fix_nve_sphere.html @@ -8,7 +8,7 @@ - fix nve/sphere command — LAMMPS 17 Dec 2015 documentation + fix nve/sphere command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -239,7 +239,7 @@ be point particles.

@@ -206,7 +206,7 @@ was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_nvt_asphere.html b/doc/fix_nvt_asphere.html index dfb6b4fc0e..721b410586 100644 --- a/doc/fix_nvt_asphere.html +++ b/doc/fix_nvt_asphere.html @@ -8,7 +8,7 @@ - fix nvt/asphere command — LAMMPS 17 Dec 2015 documentation + fix nvt/asphere command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -283,7 +283,7 @@ shape attribute.

@@ -307,7 +307,7 @@ equilibration.

@@ -230,7 +230,7 @@ equilibration.

@@ -280,7 +280,7 @@ be point particles.

@@ -210,7 +210,7 @@ This fix is not invoked during var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_orient_fcc.html b/doc/fix_orient_fcc.html index 83e246927c..65c947902b 100644 --- a/doc/fix_orient_fcc.html +++ b/doc/fix_orient_fcc.html @@ -8,7 +8,7 @@ - fix orient/fcc command — LAMMPS 17 Dec 2015 documentation + fix orient/fcc command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -311,7 +311,7 @@ Angs.

@@ -319,7 +319,7 @@ molecular dynamics simulations, var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_pimd.html b/doc/fix_pimd.html index 92d3b9c4a6..186f32e4b2 100644 --- a/doc/fix_pimd.html +++ b/doc/fix_pimd.html @@ -8,7 +8,7 @@ - fix pimd command — LAMMPS 17 Dec 2015 documentation + fix pimd command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -312,7 +312,7 @@ Path Integrals, McGraw-Hill, New York (1965).

@@ -204,7 +204,7 @@ invoked by the minimize var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_poems.html b/doc/fix_poems.html index f301fe1055..5ce35ea5cb 100644 --- a/doc/fix_poems.html +++ b/doc/fix_poems.html @@ -8,7 +8,7 @@ - fix poems — LAMMPS 17 Dec 2015 documentation + fix poems — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -266,7 +266,7 @@ Engineering With Computers (2006). ( var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_pour.html b/doc/fix_pour.html index 04c52725ff..501e4841ca 100644 --- a/doc/fix_pour.html +++ b/doc/fix_pour.html @@ -8,7 +8,7 @@ - fix pour command — LAMMPS 17 Dec 2015 documentation + fix pour command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -362,7 +362,7 @@ Additional option defaults are diam = one 1.0, dens = 1.0 1.0, vol = @@ -350,7 +350,7 @@ Phys, 81, 3684 (1984).

@@ -242,7 +242,7 @@ as described above.

@@ -352,7 +352,7 @@ This fix is not invoked during var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_qbmsst.html b/doc/fix_qbmsst.html index c20d1bda6e..ad9bf60cdc 100644 --- a/doc/fix_qbmsst.html +++ b/doc/fix_qbmsst.html @@ -8,7 +8,7 @@ - fix qbmsst command — LAMMPS 17 Dec 2015 documentation + fix qbmsst command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -345,7 +345,7 @@ T_init=300.0. e0, p0, and v0 are calculated on the first step.

@@ -335,7 +335,7 @@ Physical Chemistry, 105, 9396-9049 (2001)

@@ -262,7 +262,7 @@ Phillpot, Phys Rev B, 81, 125328 (2010).

@@ -237,7 +237,7 @@ be used for periodic cell dimensions less than 10 angstroms.

@@ -209,7 +209,7 @@ executable. See the lib/qmmm/README file for details.

@@ -308,7 +308,7 @@ Lett, 103, 190601 (2009).

@@ -215,7 +215,7 @@ for more info.

@@ -291,7 +291,7 @@ by default.

@@ -274,7 +274,7 @@ move atoms a large distance.

@@ -321,7 +321,7 @@ the run command.

@@ -882,7 +882,7 @@ J Chem Phys, 116, 8649 (2002).

@@ -321,7 +321,7 @@ associated compute_sa @@ -265,7 +265,7 @@ non-zero force to atoms during a minimization.

@@ -354,7 +354,7 @@ J of Comp Phys, 23, 327-341 (1977).

@@ -290,7 +290,7 @@ Jarzynski, Phys. Rev. Lett. 78, 2690 (1997)

@@ -206,7 +206,7 @@ section for more info.

@@ -204,7 +204,7 @@ section for more info.

@@ -212,7 +212,7 @@ section for more info.

@@ -223,7 +223,7 @@ section for more info.

@@ -229,7 +229,7 @@ section for more info.

@@ -156,7 +156,7 @@ @@ -210,7 +210,7 @@ section for more info. The molecule ID given to the particles created by this fi @@ -292,7 +292,7 @@ fix.

@@ -219,7 +219,7 @@ This fix is not invoked during var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_spring_self.html b/doc/fix_spring_self.html index 3667c34f13..4b68234c77 100644 --- a/doc/fix_spring_self.html +++ b/doc/fix_spring_self.html @@ -8,7 +8,7 @@ - fix spring/self command — LAMMPS 17 Dec 2015 documentation + fix spring/self command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -232,7 +232,7 @@ this fix.

@@ -542,7 +542,7 @@ Chem Phys, 132, 174106 (2010).

@@ -223,7 +223,7 @@ the run command. Thi @@ -282,7 +282,7 @@ the run command. Thi @@ -311,7 +311,7 @@ Phys, 81, 3684 (1984).

@@ -310,7 +310,7 @@ over time or the atom count becomes very small.

@@ -311,7 +311,7 @@ calculated by this fix is “extensive”.

@@ -219,7 +219,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_tfmc.html b/doc/fix_tfmc.html index 747660e37b..4d4f9ad7a7 100644 --- a/doc/fix_tfmc.html +++ b/doc/fix_tfmc.html @@ -8,7 +8,7 @@ - fix tfmc command — LAMMPS 17 Dec 2015 documentation + fix tfmc command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -290,7 +290,7 @@ A. Stesmans, Phys. Rev. B 85, 134301 (2012).

@@ -301,7 +301,7 @@ bewteen solvent particles.

@@ -264,7 +264,7 @@ LAMMPS was built with those packages. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_ti_spring.html b/doc/fix_ti_spring.html index d8a360db64..0968271c57 100644 --- a/doc/fix_ti_spring.html +++ b/doc/fix_ti_spring.html @@ -8,7 +8,7 @@ - fix ti/spring command — LAMMPS 17 Dec 2015 documentation + fix ti/spring command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -288,7 +288,7 @@ LAMMPS was built with those packages. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_tmd.html b/doc/fix_tmd.html index e018756837..6867e07d0b 100644 --- a/doc/fix_tmd.html +++ b/doc/fix_tmd.html @@ -8,7 +8,7 @@ - fix tmd command — LAMMPS 17 Dec 2015 documentation + fix tmd command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -264,7 +264,7 @@ Physics, 101, 3439-3443 (2003).

@@ -447,7 +447,7 @@ Plasma Phys., 53, 129-139 (2013).

@@ -241,7 +241,7 @@ called. Reneighboring is required.

@@ -297,7 +297,7 @@ stored values.

@@ -305,7 +305,7 @@ solvent particles.

@@ -268,7 +268,7 @@ for details.

@@ -434,7 +434,7 @@ erratum in JCP 84, 2901 (1986).

@@ -306,7 +306,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/fix_wall_piston.html b/doc/fix_wall_piston.html index 055d23da6f..db6e2f32cd 100644 --- a/doc/fix_wall_piston.html +++ b/doc/fix_wall_piston.html @@ -8,7 +8,7 @@ - fix wall/piston command — LAMMPS 17 Dec 2015 documentation + fix wall/piston command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -261,7 +261,7 @@ displaces atoms directly rather than exerting a force on them.

@@ -324,7 +324,7 @@ error.

@@ -349,7 +349,7 @@ option for this fix.

@@ -341,7 +341,7 @@ the run command. Thi @@ -2238,7 +2238,7 @@ @@ -424,7 +424,7 @@ those currently in the dynamic group.

@@ -200,7 +200,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/if.html b/doc/if.html index 8d207c621a..dacded37d2 100644 --- a/doc/if.html +++ b/doc/if.html @@ -8,7 +8,7 @@ - if command — LAMMPS 17 Dec 2015 documentation + if command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -333,7 +333,7 @@ non-zero. If the result is zero, the expression result is FALSE.

@@ -259,7 +259,7 @@ section for more info on packages.

@@ -244,7 +244,7 @@ set, either in the input script or in a data file.

@@ -231,7 +231,7 @@ section for more info on packages.

@@ -228,7 +228,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/improper_distance.html b/doc/improper_distance.html index 9143de0dbc..bb35c038cc 100644 --- a/doc/improper_distance.html +++ b/doc/improper_distance.html @@ -8,7 +8,7 @@ - improper_style distance command — LAMMPS 17 Dec 2015 documentation + improper_style distance command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -204,7 +204,7 @@ section for more info on packages.

@@ -224,7 +224,7 @@ section for more info on packages.

@@ -233,7 +233,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/improper_hybrid.html b/doc/improper_hybrid.html index 6fd843e309..760fb9de08 100644 --- a/doc/improper_hybrid.html +++ b/doc/improper_hybrid.html @@ -8,7 +8,7 @@ - improper_style hybrid command — LAMMPS 17 Dec 2015 documentation + improper_style hybrid command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -217,7 +217,7 @@ restart file, you need to re-specify improper_coeff commands.

@@ -184,7 +184,7 @@ data file read by the re @@ -236,7 +236,7 @@ J Chem Phys, 112, 9632 (2000).

@@ -244,7 +244,7 @@ a package.

@@ -228,7 +228,7 @@ MOLECULE package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/include.html b/doc/include.html index a963536260..7b599c2729 100644 --- a/doc/include.html +++ b/doc/include.html @@ -8,7 +8,7 @@ - include command — LAMMPS 17 Dec 2015 documentation + include command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -196,7 +196,7 @@ scripts.

@@ -232,7 +232,7 @@ reported.

@@ -285,7 +285,7 @@ LAMMPS will come to the end of the file and exit.

@@ -457,7 +457,7 @@ Chem Theory Comput, 9, 5412 (2013).

@@ -477,7 +477,7 @@ Illinois at Urbana-Champaign, (2006).

@@ -192,7 +192,7 @@ script as discussed in the ju @@ -434,7 +434,7 @@ a2 = 0 1 0, and a3 = 0 0 1.

@@ -201,7 +201,7 @@ details.

@@ -228,7 +228,7 @@ all be defined before a v @@ -232,7 +232,7 @@ could move in the gradient direction to reduce forces further.

@@ -249,7 +249,7 @@ Jonsson, Mills, Jacobsen.

@@ -396,7 +396,7 @@ system will not fully relax.

@@ -569,7 +569,7 @@ of SHAKE clusters.

@@ -550,7 +550,7 @@ for more info on packages.

@@ -355,7 +355,7 @@ cluster = no, include = all, exclude = none, page = 100000, one = @@ -237,7 +237,7 @@ are printed to the screen and log file. See var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/newton.html b/doc/newton.html index d4ff350c88..d1040ee868 100644 --- a/doc/newton.html +++ b/doc/newton.html @@ -8,7 +8,7 @@ - newton command — LAMMPS 17 Dec 2015 documentation + newton command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -216,7 +216,7 @@ defined by a read_data var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/next.html b/doc/next.html index ae07d595de..0bd6715ed9 100644 --- a/doc/next.html +++ b/doc/next.html @@ -8,7 +8,7 @@ - next command — LAMMPS 17 Dec 2015 documentation + next command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -291,7 +291,7 @@ jump in.script loopa @@ -738,7 +738,7 @@ your input script or via the “-pk omp” var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_adp.html b/doc/pair_adp.html index a03c9d21c1..c709c5fb7a 100644 --- a/doc/pair_adp.html +++ b/doc/pair_adp.html @@ -8,7 +8,7 @@ - pair_style adp command — LAMMPS 17 Dec 2015 documentation + pair_style adp command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -309,7 +309,7 @@ if LAMMPS was built with that package (which it is by default).

@@ -323,7 +323,7 @@ Physics: Condensed Matter, 14, 783-802 (2002).

@@ -263,7 +263,7 @@ initial wavefunction, free for the wavepacket width.

@@ -248,7 +248,7 @@ to be specified in an input script that reads a restart file.

@@ -254,7 +254,7 @@ body/particle interactions requires the use of the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_bop.html b/doc/pair_bop.html index 251bfaff95..b1f46a4853 100644 --- a/doc/pair_bop.html +++ b/doc/pair_bop.html @@ -8,7 +8,7 @@ - pair_style bop command — LAMMPS 17 Dec 2015 documentation + pair_style bop command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -528,7 +528,7 @@ Zimmerman, Phys. Rev. B, 85,115206 (2012).

@@ -343,7 +343,7 @@ Fumi and Tosi, J Phys Chem Solids, 25, 45 (1964).

@@ -274,7 +274,7 @@ brownian.

@@ -373,7 +373,7 @@ for more info.

@@ -304,7 +304,7 @@ the KSPACE package is installed by default.

@@ -357,7 +357,7 @@ Fischer, Gao, Guo, Ha, et al, J Phys Chem, 102, 3586 (1998).

@@ -328,7 +328,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_coeff.html b/doc/pair_coeff.html index e86d387124..ec6fe4c654 100644 --- a/doc/pair_coeff.html +++ b/doc/pair_coeff.html @@ -8,7 +8,7 @@ - pair_coeff command — LAMMPS 17 Dec 2015 documentation + pair_coeff command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -289,7 +289,7 @@ section of var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_colloid.html b/doc/pair_colloid.html index 8edc98b4d0..d009a0fd6b 100644 --- a/doc/pair_colloid.html +++ b/doc/pair_colloid.html @@ -8,7 +8,7 @@ - pair_style colloid command — LAMMPS 17 Dec 2015 documentation + pair_style colloid command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -326,7 +326,7 @@ only per-type polydispersity is enabled via the pair_coeff parameters.

@@ -318,7 +318,7 @@ Y. Li, Z. Lu, S. R. Phillpot, and S. B. Sinnott, Mat. Sci. & Eng: R 74, @@ -499,7 +499,7 @@ Phys, 110, 8254 (1999).

@@ -246,7 +246,7 @@ if LAMMPS was built with that package. See the M @@ -232,7 +232,7 @@ enabled if LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_dipole.html b/doc/pair_dipole.html index 492348851a..b96cf5251f 100644 --- a/doc/pair_dipole.html +++ b/doc/pair_dipole.html @@ -8,7 +8,7 @@ - pair_style lj/cut/dipole/cut command — LAMMPS 17 Dec 2015 documentation + pair_style lj/cut/dipole/cut command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -391,7 +391,7 @@ Clarendon Press, Oxford, 1987.

@@ -338,7 +338,7 @@ Phys Comm, 230, 7191-7201 (2011).

@@ -282,7 +282,7 @@ of Gas Flows” (1994).

@@ -587,7 +587,7 @@ Materials Science & Engineering, 7, 075005 (2009).

@@ -293,7 +293,7 @@ appropriate units if your simulation doesn’t use “metal” units @@ -431,7 +431,7 @@ Chem, 32, 497-512 (2011).

@@ -304,7 +304,7 @@ Xiaowang Zhou (Sandia) for details via email at xzhou at sandia.gov.

@@ -294,7 +294,7 @@ enabled if LAMMPS is build with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_gayberne.html b/doc/pair_gayberne.html index 977de74351..dd580ceeb5 100644 --- a/doc/pair_gayberne.html +++ b/doc/pair_gayberne.html @@ -8,7 +8,7 @@ - pair_style gayberne command — LAMMPS 17 Dec 2015 documentation + pair_style gayberne command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -346,7 +346,7 @@ Berardi, Muccioli, Zannoni, J Chem Phys, 128, 024905 (2008).

@@ -391,7 +391,7 @@ E, 64, p 051302 (2001).

@@ -303,7 +303,7 @@ support the inner, middle, outer keywords.

@@ -377,7 +377,7 @@ thermo_style custom step temp epair v_E_hbond @@ -511,7 +511,7 @@ the same or else LAMMPS will generate an error.

@@ -255,7 +255,7 @@ kim-api package version 1.6.0 and higher.

@@ -235,7 +235,7 @@ appropriate units if your simulation doesn’t use “metal” units @@ -268,7 +268,7 @@ line/line or line/particle interactions requires the use the @@ -281,7 +281,7 @@ LAMMPS is build with that package. See the Making @@ -515,7 +515,7 @@ Phys, 79, 926 (1983).

@@ -251,7 +251,7 @@ details.

@@ -264,7 +264,7 @@ support the inner, middle, outer keywords.

@@ -255,7 +255,7 @@ to be specified in an input script that reads a restart file.

@@ -357,7 +357,7 @@ the KSPACE package is installed by default.

@@ -247,7 +247,7 @@ if LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_lj_smooth.html b/doc/pair_lj_smooth.html index 1abb3259db..d91e72b377 100644 --- a/doc/pair_lj_smooth.html +++ b/doc/pair_lj_smooth.html @@ -8,7 +8,7 @@ - pair_style lj/smooth command — LAMMPS 17 Dec 2015 documentation + pair_style lj/smooth command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -264,7 +264,7 @@ to be specified in an input script that reads a restart file.

@@ -244,7 +244,7 @@ to be specified in an input script that reads a restart file.

@@ -437,7 +437,7 @@ Phys Lett, 222, 529 (1994).

@@ -345,7 +345,7 @@ Illinois Urbana-Champaign, @@ -332,7 +332,7 @@ velocity-gradient direction. In this case, one must use var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_mdf.html b/doc/pair_mdf.html index 38261bec5f..7aeac6af1c 100644 --- a/doc/pair_mdf.html +++ b/doc/pair_mdf.html @@ -8,7 +8,7 @@ - pair_style lj/mdf command — LAMMPS 17 Dec 2015 documentation + pair_style lj/mdf command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -296,7 +296,7 @@ section for more info on packages.

@@ -482,7 +482,7 @@ of Ions in Matter”, Vol 1, 1985, Pergamon Press.

@@ -275,7 +275,7 @@ Kress, Modelling Simulation Materials Science Enginerring, 8, 825 @@ -269,7 +269,7 @@ and Hyoungki Park at The Ohio State University.

@@ -344,7 +344,7 @@ Oppelstrup and Moriarty, to be published.

@@ -239,7 +239,7 @@ G. Jackson, E. Muller, J Phys Chem B, 115, 11154 (2011).

@@ -398,7 +398,7 @@ mixing. See the doc pages for individual pair styles for details.

@@ -250,7 +250,7 @@ to be specified in an input script that reads a restart file.

@@ -259,7 +259,7 @@ package (which it is by default). See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_nm.html b/doc/pair_nm.html index ad818d9182..4e03608f09 100644 --- a/doc/pair_nm.html +++ b/doc/pair_nm.html @@ -8,7 +8,7 @@ - pair_style nm/cut command — LAMMPS 17 Dec 2015 documentation + pair_style nm/cut command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -308,7 +308,7 @@ LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_none.html b/doc/pair_none.html index 099b948c36..6feb1cccc6 100644 --- a/doc/pair_none.html +++ b/doc/pair_none.html @@ -8,7 +8,7 @@ - pair_style none command — LAMMPS 17 Dec 2015 documentation + pair_style none command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -193,7 +193,7 @@ amount of memory. So you should either set the neighbor style to @@ -338,7 +338,7 @@ Plasticity Model for Peridynamics. Sandia National Lab Report, @@ -346,7 +346,7 @@ F. P. Doty, J. Mater. Sci. Res., 4, 15 (2015).

@@ -232,7 +232,7 @@ Review Letters 104, 136403 (2010).

@@ -350,7 +350,7 @@ Journal of Physical Chemistry A, 112, 1040-1053 (2008).

@@ -421,7 +421,7 @@ of Physical Chemistry A, 115, 11016-11022 (2011).

@@ -342,7 +342,7 @@ less accurate when high-aspect ratio ellipsoids are used.

@@ -295,7 +295,7 @@ was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_smd_hertz.html b/doc/pair_smd_hertz.html index bd6d5fd836..923c520a0e 100644 --- a/doc/pair_smd_hertz.html +++ b/doc/pair_smd_hertz.html @@ -8,7 +8,7 @@ - pair_style smd/hertz command — LAMMPS 17 Dec 2015 documentation + pair_style smd/hertz command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -199,7 +199,7 @@ section for more info.

@@ -209,7 +209,7 @@ section for more info.

@@ -200,7 +200,7 @@ section for more info.

@@ -214,7 +214,7 @@ section for more info.

@@ -394,7 +394,7 @@ Phys, 110, 8254 (1999).

@@ -319,7 +319,7 @@ available at var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_soft.html b/doc/pair_soft.html index c81f711471..4d92a74b72 100644 --- a/doc/pair_soft.html +++ b/doc/pair_soft.html @@ -8,7 +8,7 @@ - pair_style soft command — LAMMPS 17 Dec 2015 documentation + pair_style soft command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -278,7 +278,7 @@ to be specified in an input script that reads a restart file.

@@ -206,7 +206,7 @@ if LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_sph_idealgas.html b/doc/pair_sph_idealgas.html index de87029b57..de6668d37b 100644 --- a/doc/pair_sph_idealgas.html +++ b/doc/pair_sph_idealgas.html @@ -8,7 +8,7 @@ - pair_style sph/idealgas command — LAMMPS 17 Dec 2015 documentation + pair_style sph/idealgas command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -214,7 +214,7 @@ if LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_sph_lj.html b/doc/pair_sph_lj.html index a162bac208..45c07793f4 100644 --- a/doc/pair_sph_lj.html +++ b/doc/pair_sph_lj.html @@ -8,7 +8,7 @@ - pair_style sph/lj command — LAMMPS 17 Dec 2015 documentation + pair_style sph/lj command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -216,7 +216,7 @@ if LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_sph_rhosum.html b/doc/pair_sph_rhosum.html index 18112e896f..c29d4e1a31 100644 --- a/doc/pair_sph_rhosum.html +++ b/doc/pair_sph_rhosum.html @@ -8,7 +8,7 @@ - pair_style sph/rhosum command — LAMMPS 17 Dec 2015 documentation + pair_style sph/rhosum command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -208,7 +208,7 @@ if LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_sph_taitwater.html b/doc/pair_sph_taitwater.html index f35151763d..2e9a5a70d1 100644 --- a/doc/pair_sph_taitwater.html +++ b/doc/pair_sph_taitwater.html @@ -8,7 +8,7 @@ - pair_style sph/taitwater command — LAMMPS 17 Dec 2015 documentation + pair_style sph/taitwater command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -216,7 +216,7 @@ if LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_sph_taitwater_morris.html b/doc/pair_sph_taitwater_morris.html index 0421f7fb02..9228b09287 100644 --- a/doc/pair_sph_taitwater_morris.html +++ b/doc/pair_sph_taitwater_morris.html @@ -8,7 +8,7 @@ - pair_style sph/taitwater/morris command — LAMMPS 17 Dec 2015 documentation + pair_style sph/taitwater/morris command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -214,7 +214,7 @@ if LAMMPS was built with that package. See the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_srp.html b/doc/pair_srp.html index 07cf9ea6f9..4db86f8f06 100644 --- a/doc/pair_srp.html +++ b/doc/pair_srp.html @@ -8,7 +8,7 @@ - pair_style srp command — LAMMPS 17 Dec 2015 documentation + pair_style srp command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -296,7 +296,7 @@ Chem Phys, 136 (13) 134903, 2012.

@@ -371,7 +371,7 @@ package.

@@ -350,7 +350,7 @@ appropriate units if your simulation doesn’t use “metal” units @@ -378,7 +378,7 @@ commands do need to be specified in the restart input script.

@@ -380,7 +380,7 @@ Condens. Matter, 15, 5649(2003).

@@ -314,7 +314,7 @@ Comp. Mat. Science, 39, 457 (2007).

@@ -380,7 +380,7 @@ Condens. Matter, 15, 5649(2003).

@@ -253,7 +253,7 @@ pairs are 1-4 partners of which dihedrals.

@@ -271,7 +271,7 @@ tri/particle interactions requires the use the var DOCUMENTATION_OPTIONS = { URL_ROOT:'./', - VERSION:'17 Dec 2015', + VERSION:'', COLLAPSE_INDEX:false, FILE_SUFFIX:'.html', HAS_SOURCE: true diff --git a/doc/pair_vashishta.html b/doc/pair_vashishta.html index d071d4d40f..277821dbe1 100644 --- a/doc/pair_vashishta.html +++ b/doc/pair_vashishta.html @@ -8,7 +8,7 @@ - pair_style vashishta command — LAMMPS 17 Dec 2015 documentation + pair_style vashishta command — LAMMPS documentation @@ -32,7 +32,7 @@ - + @@ -350,7 +350,7 @@ appropriate units if your simulation doesn’t use “metal” units @@ -225,7 +225,7 @@ pairwise portion of the potential, not the embedding portion.

@@ -245,7 +245,7 @@ to be specified in an input script that reads a restart file.

@@ -284,7 +284,7 @@ And Membranes, Westview Press, ISBN: 978-0813340791 (2003).

@@ -279,7 +279,7 @@ Stopping and Range of Ions in Matter,” Volume 1, Pergamon, 1985.

@@ -223,7 +223,7 @@ command lays out a 3d grid of processors in each of 2 partitions.

@@ -431,7 +431,7 @@ Research 32, 321 (2002).

@@ -232,7 +232,7 @@ thermodynamic properties, global values calculated by a @@ -464,7 +464,7 @@ cart.

@@ -606,7 +606,7 @@ successfully.

@@ -196,7 +196,7 @@ returned.

@@ -1302,7 +1302,7 @@ fields:

@@ -443,7 +443,7 @@ no, add = no, scaled = no, wrapped = yes, and format = native.

@@ -373,7 +373,7 @@ package must be installed.

@@ -471,7 +471,7 @@ rotation.

@@ -243,7 +243,7 @@ this scenario.

@@ -333,7 +333,7 @@ infinity), start = same as first, stop = same as last, every = 0, skip @@ -213,7 +213,7 @@ more details.

@@ -316,7 +316,7 @@ package must be installed.

@@ -351,7 +351,7 @@ timestep + N, pre = yes, and post = yes.

@@ -421,7 +421,7 @@ conserving energy to adequate precision.

@@ -164,7 +164,7 @@ @@ -522,7 +522,7 @@ coordinates outside the simulation box if they are ghost atoms.

@@ -252,7 +252,7 @@ executing the cd command will silently do nothing.

@@ -397,7 +397,7 @@ Fischer, Gao, Guo, Ha, et al, J Phys Chem, 102, 3586 (1998).

@@ -250,7 +250,7 @@ commands in your input script.

@@ -429,7 +429,7 @@ Research 32, 321 (2002).

@@ -277,7 +277,7 @@ for more info on packages.

@@ -215,7 +215,7 @@ thermo v_s @@ -320,7 +320,7 @@ format defaults are “multi”, “%8d”, and “%14.4f @@ -484,7 +484,7 @@ variable formula if this is not the case.

@@ -231,7 +231,7 @@ can just use the loop or off setting.

@@ -243,7 +243,7 @@ the outer loop (largest) timestep.

@@ -561,7 +561,7 @@ Let, 418, 245-249 (2006)

@@ -191,7 +191,7 @@ via the compute_mod @@ -190,7 +190,7 @@ This closes the file associated with the dump.

@@ -191,7 +191,7 @@ via the fix_modify @@ -369,7 +369,7 @@ distance to default values for each style:

@@ -1266,7 +1266,7 @@ must have the same number of values.

@@ -385,7 +385,7 @@ keywords are not defined by default.

@@ -270,7 +270,7 @@ setup, atom masses initialized, etc).

@@ -239,7 +239,7 @@ commands.

@@ -267,7 +267,7 @@ package must be installed.