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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15588 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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doc/src/Section_python.txt
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@ -42,10 +42,10 @@ pieces of software together, such as a simulation package plus a
visualization package, or to run a coupled multiscale or multiphysics
model.
See "Section_howto 10"_Section_howto.html#howto_10 of the manual and
See "Section 6.10"_Section_howto.html#howto_10 of the manual and
the couple directory of the distribution for more ideas about coupling
LAMMPS to other codes. See "Section_howto
19"_Section_howto.html#howto_19 for a description of the LAMMPS
LAMMPS to other codes. See "Section
6.19"_Section_howto.html#howto_19 for a description of the LAMMPS
library interface provided in src/library.cpp and src/library.h, and
how to extend it for your needs. As described below, that interface
is what is exposed to Python either when calling LAMMPS from Python or
@ -179,7 +179,7 @@ file and the shared library.
11.3 Building LAMMPS as a shared library :link(py_3),h4
Instructions on how to build LAMMPS as a shared library are given in
"Section_start 5"_Section_start.html#start_5. A shared library is one
"Section 2.5"_Section_start.html#start_5. A shared library is one
that is dynamically loadable, which is what Python requires to wrap
LAMMPS. On Linux this is a library file that ends in ".so", not ".a".
@ -198,7 +198,7 @@ NOTE: If you are building LAMMPS with an MPI or FFT library or other
auxiliary libraries (used by various packages), then all of these
extra libraries must also be shared libraries. If the LAMMPS
shared-library build fails with an error complaining about this, see
"Section_start 5"_Section_start.html#start_5 for more details.
"Section 2.5"_Section_start.html#start_5 for more details.
:line
@ -419,8 +419,8 @@ first importing from the lammps.py file:
>>> from ctypes import CDLL
>>> CDLL("liblammps.so") :pre
If an error occurs, carefully go thru the steps in "Section_start
5"_Section_start.html#start_5 and above about building a shared
If an error occurs, carefully go thru the steps in "Section
2.5"_Section_start.html#start_5 and above about building a shared
library and about insuring Python can find the necessary two files
it needs.
@ -656,7 +656,7 @@ subscripting. The one exception is that for a fix that calculates a
global vector or array, a single double value from the vector or array
is returned, indexed by I (vector) or I and J (array). I,J are
zero-based indices. The I,J arguments can be left out if not needed.
See "Section_howto 15"_Section_howto.html#howto_15 of the manual for a
See "Section 6.15"_Section_howto.html#howto_15 of the manual for a
discussion of global, per-atom, and local data, and of scalar, vector,
and array data types. See the doc pages for individual
"computes"_compute.html and "fixes"_fix.html for a description of what
@ -790,13 +790,13 @@ capability needed by these Python scripts.
Note that for PyMol, you need to have built and installed the
open-source version of PyMol in your Python, so that you can import it
from a Python script. See the PyMol WWW pages "here"_pymol or
from a Python script. See the PyMol WWW pages "here"_pymolhome or
"here"_pymolopen for more details:
http://www.pymol.org
http://sourceforge.net/scm/?type=svn&group_id=4546 :pre
:link(pymol,http://www.pymol.org)
:link(pymolhome,http://www.pymol.org)
:link(pymolopen,http://sourceforge.net/scm/?type=svn&group_id=4546)
The latter link is to the open-source version.