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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7764 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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sjplimp
2012-02-13 15:49:36 +00:00
parent 63dfdf86af
commit 703c341930
6 changed files with 1234 additions and 834 deletions
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doc/Section_errors.html
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doc/Section_errors.txt
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doc/compute_pair_local.html
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@ -21,7 +21,7 @@
<LI>zero or more keywords may be appended
<LI>keyword = <I>dist</I> or <I>eng</I> or <I>force</I> or <I>fx</I> or <I>fy</I> or <I>fz</I> or <I>fN</I>
<LI>keyword = <I>dist</I> or <I>eng</I> or <I>force</I> or <I>fx</I> or <I>fy</I> or <I>fz</I> or <I>pN</I>
<PRE> <I>dist</I> = pairwise distance
<I>eng</I> = pairwise energy

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doc/compute_pair_local.txt
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@ -15,7 +15,7 @@ compute ID group-ID pair/local input1 input2 ... :pre
ID, group-ID are documented in "compute"_compute.html command :ulb,l
pair/local = style name of this compute command :l
zero or more keywords may be appended :l
keyword = {dist} or {eng} or {force} or {fx} or {fy} or {fz} or {fN} :l
keyword = {dist} or {eng} or {force} or {fx} or {fy} or {fz} or {pN} :l
{dist} = pairwise distance
{eng} = pairwise energy
{force} = pairwise force

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doc/dump_modify.html
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@ -336,12 +336,13 @@ pre-defined color names with new RBG values.
<P>The <I>element</I> keyword applies only to the the dump <I>cfg</I> and <I>image</I>
styles. It associates element names (e.g. H, C, Fe) with LAMMPS atom
types. In the case of dump <I>cfg</I>, it allows the <A HREF = "http://mt.seas.upenn.edu/Archive/Graphics/A">AtomEye</A>
visualization package to read the dump file and render atoms with the
appropriate size and color. In the case of dump <I>image</I>, the output
images will follow the same <A HREF = "http://mt.seas.upenn.edu/Archive/Graphics/A">AtomEye</A> convention. An element
name is specified for each atom type (1 to Ntype) in the simulation.
The same element name can be given to multiple atom types.
types. See the list of element names at the bottom of this page. In
the case of dump <I>cfg</I>, it allows the <A HREF = "http://mt.seas.upenn.edu/Archive/Graphics/A">AtomEye</A> visualization
package to read the dump file and render atoms with the appropriate
size and color. In the case of dump <I>image</I>, the output images will
follow the same <A HREF = "http://mt.seas.upenn.edu/Archive/Graphics/A">AtomEye</A> convention. An element name is
specified for each atom type (1 to Ntype) in the simulation. The same
element name can be given to multiple atom types.
</P>
@ -546,6 +547,23 @@ box size stored with the snapshot.
</UL>
<HR>
<P>These are the standard 109 element names that LAMMPS pre-defines for
use with the <A HREF = "dump_image.html">dump image</A> and dump_modify commands.
</P>
<UL><LI>1-10 = "H", "He", "Li", "Be", "B", "C", "N", "O", "F", "Ne"
<LI>11-20 = "Na", "Mg", "Al", "Si", "P", "S", "Cl", "Ar", "K", "Ca"
<LI>21-30 = "Sc", "Ti", "V", "Cr", "Mn", "Fe", "Co", "Ni", "Cu", "Zn"
<LI>31-40 = "Ga", "Ge", "As", "Se", "Br", "Kr", "Rb", "Sr", "Y", "Zr"
<LI>41-50 = "Nb", "Mo", "Tc", "Ru", "Rh", "Pd", "Ag", "Cd", "In", "Sn"
<LI>51-60 = "Sb", "Te", "I", "Xe", "Cs", "Ba", "La", "Ce", "Pr", "Nd"
<LI>61-70 = "Pm", "Sm", "Eu", "Gd", "Tb", "Dy", "Ho", "Er", "Tm", "Yb"
<LI>71-80 = "Lu", "Hf", "Ta", "W", "Re", "Os", "Ir", "Pt", "Au", "Hg"
<LI>81-90 = "Tl", "Pb", "Bi", "Po", "At", "Rn", "Fr", "Ra", "Ac", "Th"
<LI>91-100 = "Pa", "U", "Np", "Pu", "Am", "Cm", "Bk", "Cf", "Es", "Fm"
<LI>101-109 = "Md", "No", "Lr", "Rf", "Db", "Sg", "Bh", "Hs", "Mt"
</UL>
<HR>
<P>These are the 140 colors that LAMMPS pre-defines for use with the
<A HREF = "dump_image.html">dump image</A> and dump_modify commands. Additional
colors can be defined with the dump_modify color command. The 3

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doc/dump_modify.txt
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@ -329,12 +329,13 @@ pre-defined color names with new RBG values.
The {element} keyword applies only to the the dump {cfg} and {image}
styles. It associates element names (e.g. H, C, Fe) with LAMMPS atom
types. In the case of dump {cfg}, it allows the "AtomEye"_atomeye
visualization package to read the dump file and render atoms with the
appropriate size and color. In the case of dump {image}, the output
images will follow the same "AtomEye"_atomeye convention. An element
name is specified for each atom type (1 to Ntype) in the simulation.
The same element name can be given to multiple atom types.
types. See the list of element names at the bottom of this page. In
the case of dump {cfg}, it allows the "AtomEye"_atomeye visualization
package to read the dump file and render atoms with the appropriate
size and color. In the case of dump {image}, the output images will
follow the same "AtomEye"_atomeye convention. An element name is
specified for each atom type (1 to Ntype) in the simulation. The same
element name can be given to multiple atom types.
:link(atomeye,http://mt.seas.upenn.edu/Archive/Graphics/A)
@ -539,6 +540,23 @@ unwrap = no :ul
:line
These are the standard 109 element names that LAMMPS pre-defines for
use with the "dump image"_dump_image.html and dump_modify commands.
1-10 = "H", "He", "Li", "Be", "B", "C", "N", "O", "F", "Ne"
11-20 = "Na", "Mg", "Al", "Si", "P", "S", "Cl", "Ar", "K", "Ca"
21-30 = "Sc", "Ti", "V", "Cr", "Mn", "Fe", "Co", "Ni", "Cu", "Zn"
31-40 = "Ga", "Ge", "As", "Se", "Br", "Kr", "Rb", "Sr", "Y", "Zr"
41-50 = "Nb", "Mo", "Tc", "Ru", "Rh", "Pd", "Ag", "Cd", "In", "Sn"
51-60 = "Sb", "Te", "I", "Xe", "Cs", "Ba", "La", "Ce", "Pr", "Nd"
61-70 = "Pm", "Sm", "Eu", "Gd", "Tb", "Dy", "Ho", "Er", "Tm", "Yb"
71-80 = "Lu", "Hf", "Ta", "W", "Re", "Os", "Ir", "Pt", "Au", "Hg"
81-90 = "Tl", "Pb", "Bi", "Po", "At", "Rn", "Fr", "Ra", "Ac", "Th"
91-100 = "Pa", "U", "Np", "Pu", "Am", "Cm", "Bk", "Cf", "Es", "Fm"
101-109 = "Md", "No", "Lr", "Rf", "Db", "Sg", "Bh", "Hs", "Mt" :ul
:line
These are the 140 colors that LAMMPS pre-defines for use with the
"dump image"_dump_image.html and dump_modify commands. Additional
colors can be defined with the dump_modify color command. The 3