replace more raw html code and add syntax highlighting
This commit is contained in:
Axel Kohlmeyer
@ -78,7 +78,3 @@ Indices and tables
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* :ref:`genindex`
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* :ref:`search`
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.. raw:: html
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</BODY>
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@ -89,7 +89,7 @@ Examples
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""""""""
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.. parsed-literal::
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.. code-block:: LAMMPS
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dump d0 all image 100 dump.\*.jpg type type
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dump d1 mobile image 500 snap.\*.png element element ssao yes 4539 0.6
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@ -121,19 +121,12 @@ script to generate the images/movie.
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Here are two sample images, rendered as 1024x1024 JPEG files. Click
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to see the full-size images:
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.. raw:: html
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<DIV ALIGN=center>
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.. image:: JPG/dump1_small.jpg
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:target: JPG/dump1.jpg
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:width: 48%
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.. image:: JPG/dump2_small.jpg
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:target: JPG/dump2.jpg
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.. raw:: html
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</DIV>
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:width: 48%
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Only atoms in the specified group are rendered in the image. The
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:doc:`dump_modify region and thresh <dump_modify>` commands can also
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@ -235,8 +228,6 @@ the `AtomEye <atomeye_>`_ visualization package.
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.. _atomeye: http://mt.seas.upenn.edu/Archive/Graphics/A
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If other atom attributes are used for the *color* or *diameter*
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settings, they are interpreted in the following way.
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@ -258,20 +249,16 @@ drawn. Note that finite-size spherical particles, as defined by
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:doc:`atom_style sphere <atom_style>` define a per-particle radius or
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diameter, which can be used as the *diameter* setting.
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----------
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The various keywords listed above control how the image is rendered.
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As listed below, all of the keywords have defaults, most of which you
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will likely not need to change. The :doc:`dump modify <dump_modify>`
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also has options specific to the dump image style, particularly for
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assigning colors to atoms, bonds, and other image features.
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----------
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The *atom* keyword allow you to turn off the drawing of all atoms, if
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the specified value is *no*\ . Note that this will not turn off the
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drawing of particles that are represented as lines, triangles, or
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@ -283,10 +270,8 @@ set a single numeric *size*\ . All atoms will be drawn with that
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diameter, e.g. 1.5, which is in whatever distance :doc:`units <units>`
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the input script defines, e.g. Angstroms.
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----------
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The *bond* keyword allows to you to alter how bonds are drawn. A bond
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is only drawn if both atoms in the bond are being drawn due to being
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in the specified group and due to other selection criteria
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@ -329,10 +314,8 @@ If *type* is specified for the *width* value then the diameter of each
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bond is determined by its bond type. By default all types have
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diameter 0.5. This mapping can be changed by the :doc:`dump_modify bdiam <dump_modify>` command.
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----------
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The *line* keyword can be used when :doc:`atom_style line <atom_style>`
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is used to define particles as line segments, and will draw them as
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lines. If this keyword is not used, such particles will be drawn as
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@ -586,10 +569,10 @@ MPEG or other movie file you can use:
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* a) Use the ImageMagick convert program.
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.. parsed-literal::
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.. code-block:: bash
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% convert \*.jpg foo.gif
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% convert -loop 1 \*.ppm foo.mpg
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% convert *.jpg foo.gif
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% convert -loop 1 *.ppm foo.mpg
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Animated GIF files from ImageMagick are not optimized. You can use
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@ -614,18 +597,15 @@ MPEG or other movie file you can use:
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allows extremely flexible encoding and decoding of movies.
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.. parsed-literal::
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.. code-block:: bash
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cat snap.\*.jpg \| ffmpeg -y -f image2pipe -c:v mjpeg -i - -b:v 2000k movie.m4v
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cat snap.\*.ppm \| ffmpeg -y -f image2pipe -c:v ppm -i - -b:v 2400k movie.avi
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cat snap.*.jpg | ffmpeg -y -f image2pipe -c:v mjpeg -i - -b:v 2000k movie.m4v
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cat snap.*.ppm | ffmpeg -y -f image2pipe -c:v ppm -i - -b:v 2400k movie.avi
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Front ends for FFmpeg exist for multiple platforms. For more
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information see the `FFmpeg homepage <http://www.ffmpeg.org/>`_
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----------
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@ -640,7 +620,7 @@ Play the movie:
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movie. Both are available for multiple OSes and support a large
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variety of file formats and decoders.
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.. parsed-literal::
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.. code-block:: bash
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% mplayer foo.mpg
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% ffplay bar.avi
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@ -649,9 +629,9 @@ Play the movie:
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`animate tool <http://www.sandia.gov/~sjplimp/pizza/doc/animate.html>`_,
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which works directly on a series of image files.
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.. parsed-literal::
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.. code-block:: python
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a = animate("foo\*.jpg")
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a = animate("foo*.jpg")
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* d) QuickTime and other Windows- or MacOS-based media players can
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obviously play movie files directly. Similarly for corresponding tools
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@ -660,11 +640,8 @@ Play the movie:
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additional libraries, purchasing a license, or may not be
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supported.
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----------
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See the :doc:`Modify <Modify>` doc page for information on how to add
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new compute and fix styles to LAMMPS to calculate per-atom quantities
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which could then be output into dump files.
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