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<div itemprop="articleBody">
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<div class="section" id="pair-style-nm-cut-command">
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<span id="index-0"></span><h1>pair_style nm/cut command<a class="headerlink" href="#pair-style-nm-cut-command" title="Permalink to this headline">¶</a></h1>
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</div>
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<div class="section" id="pair-style-nm-cut-coul-cut-command">
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<h1>pair_style nm/cut/coul/cut command<a class="headerlink" href="#pair-style-nm-cut-coul-cut-command" title="Permalink to this headline">¶</a></h1>
|
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</div>
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<div class="section" id="pair-style-nm-cut-coul-long-command">
|
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<h1>pair_style nm/cut/coul/long command<a class="headerlink" href="#pair-style-nm-cut-coul-long-command" title="Permalink to this headline">¶</a></h1>
|
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</div>
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<div class="section" id="pair-style-nm-cut-omp-command">
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<h1>pair_style nm/cut/omp command<a class="headerlink" href="#pair-style-nm-cut-omp-command" title="Permalink to this headline">¶</a></h1>
|
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</div>
|
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<div class="section" id="pair-style-nm-cut-coul-cut-omp-command">
|
||||
<h1>pair_style nm/cut/coul/cut/omp command<a class="headerlink" href="#pair-style-nm-cut-coul-cut-omp-command" title="Permalink to this headline">¶</a></h1>
|
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</div>
|
||||
<div class="section" id="pair-style-nm-cut-coul-long-omp-command">
|
||||
<h1>pair_style nm/cut/coul/long/omp command<a class="headerlink" href="#pair-style-nm-cut-coul-long-omp-command" title="Permalink to this headline">¶</a></h1>
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<div class="section" id="syntax">
|
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<h2>Syntax<a class="headerlink" href="#syntax" title="Permalink to this headline">¶</a></h2>
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<div class="highlight-python"><div class="highlight"><pre>pair_style style args
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</pre></div>
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</div>
|
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<ul class="simple">
|
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<li>style = <em>nm/cut</em> or <em>nm/cut/coul/cut</em> or <em>nm/cut/coul/long</em></li>
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<li>args = list of arguments for a particular style</li>
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</ul>
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<pre class="literal-block">
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<em>nm/cut</em> args = cutoff
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<HR>
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|
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<H3>pair_style nm/cut command
|
||||
</H3>
|
||||
<H3>pair_style nm/cut/coul/cut command
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||||
</H3>
|
||||
<H3>pair_style nm/cut/coul/long command
|
||||
</H3>
|
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<H3>pair_style nm/cut/omp command
|
||||
</H3>
|
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<H3>pair_style nm/cut/coul/cut/omp command
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</H3>
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<H3>pair_style nm/cut/coul/long/omp command
|
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</H3>
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<P><B>Syntax:</B>
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</P>
|
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<PRE>pair_style style args
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</PRE>
|
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<UL><LI>style = <I>nm/cut</I> or <I>nm/cut/coul/cut</I> or <I>nm/cut/coul/long</I>
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|
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<LI>args = list of arguments for a particular style
|
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|
||||
<PRE> <I>nm/cut</I> args = cutoff
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||||
cutoff = global cutoff for Pair interactions (distance units)
|
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<em>nm/cut/coul/cut</em> args = cutoff (cutoff2)
|
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<I>nm/cut/coul/cut</I> args = cutoff (cutoff2)
|
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cutoff = global cutoff for Pair (and Coulombic if only 1 arg) (distance units)
|
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cutoff2 = global cutoff for Coulombic (optional) (distance units)
|
||||
<em>nm/cut/coul/long</em> args = cutoff (cutoff2)
|
||||
<I>nm/cut/coul/long</I> args = cutoff (cutoff2)
|
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cutoff = global cutoff for Pair (and Coulombic if only 1 arg) (distance units)
|
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cutoff2 = global cutoff for Coulombic (optional) (distance units)
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</pre>
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</div>
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<div class="section" id="examples">
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<h2>Examples<a class="headerlink" href="#examples" title="Permalink to this headline">¶</a></h2>
|
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<div class="highlight-python"><div class="highlight"><pre>pair_style nm/cut 12.0
|
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cutoff2 = global cutoff for Coulombic (optional) (distance units)
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</PRE>
|
||||
|
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</UL>
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<P><B>Examples:</B>
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</P>
|
||||
<PRE>pair_style nm/cut 12.0
|
||||
pair_coeff * * 0.01 5.4 8.0 7.0
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||||
pair_coeff 1 1 0.01 4.4 7.0 6.0
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||||
</pre></div>
|
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</div>
|
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<div class="highlight-python"><div class="highlight"><pre>pair_style nm/cut/coul/cut 12.0 15.0
|
||||
pair_coeff 1 1 0.01 4.4 7.0 6.0
|
||||
</PRE>
|
||||
<PRE>pair_style nm/cut/coul/cut 12.0 15.0
|
||||
pair_coeff * * 0.01 5.4 8.0 7.0
|
||||
pair_coeff 1 1 0.01 4.4 7.0 6.0
|
||||
</pre></div>
|
||||
</div>
|
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<div class="highlight-python"><div class="highlight"><pre>pair_style nm/cut/coul/long 12.0 15.0
|
||||
pair_coeff 1 1 0.01 4.4 7.0 6.0
|
||||
</PRE>
|
||||
<PRE>pair_style nm/cut/coul/long 12.0 15.0
|
||||
pair_coeff * * 0.01 5.4 8.0 7.0
|
||||
pair_coeff 1 1 0.01 4.4 7.0 6.0
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</pre></div>
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</div>
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</div>
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<div class="section" id="description">
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<h2>Description<a class="headerlink" href="#description" title="Permalink to this headline">¶</a></h2>
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<p>Style <em>nm</em> computes site-site interactions based on the N-M potential
|
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by <a class="reference internal" href="#clarke"><span>Clarke</span></a>, mainly used for ionic liquids. A site can
|
||||
pair_coeff 1 1 0.01 4.4 7.0 6.0
|
||||
</PRE>
|
||||
<P><B>Description:</B>
|
||||
</P>
|
||||
<P>Style <I>nm</I> computes site-site interactions based on the N-M potential
|
||||
by <A HREF = "#Clarke">Clarke</A>, mainly used for ionic liquids. A site can
|
||||
represent a single atom or a united-atom site. The energy of an
|
||||
interaction has the following form:</p>
|
||||
<img alt="_images/pair_nm.jpg" class="align-center" src="_images/pair_nm.jpg" />
|
||||
<p>Rc is the cutoff.</p>
|
||||
<p>Style <em>nm/cut/coul/cut</em> adds a Coulombic pairwise interaction given by</p>
|
||||
<img alt="_images/pair_coulomb.jpg" class="align-center" src="_images/pair_coulomb.jpg" />
|
||||
<p>where C is an energy-conversion constant, Qi and Qj are the charges on
|
||||
the 2 atoms, and epsilon is the dielectric constant which can be set
|
||||
by the <a class="reference internal" href="dielectric.html"><em>dielectric</em></a> command. If one cutoff is
|
||||
specified in the pair_style command, it is used for both the NM and
|
||||
interaction has the following form:
|
||||
</P>
|
||||
<CENTER><IMG SRC = "Eqs/pair_nm.jpg">
|
||||
</CENTER>
|
||||
<P>Rc is the cutoff.
|
||||
</P>
|
||||
<P>Style <I>nm/cut/coul/cut</I> adds a Coulombic pairwise interaction given by
|
||||
</P>
|
||||
<CENTER><IMG SRC = "Eqs/pair_coulomb.jpg">
|
||||
</CENTER>
|
||||
<P>where C is an energy-conversion constant, Qi and Qj are the charges on
|
||||
the 2 atoms, and epsilon is the dielectric constant which can be set
|
||||
by the <A HREF = "dielectric.html">dielectric</A> command. If one cutoff is
|
||||
specified in the pair_style command, it is used for both the NM and
|
||||
Coulombic terms. If two cutoffs are specified, they are used as
|
||||
cutoffs for the NM and Coulombic terms respectively.</p>
|
||||
<p>Styles <em>nm/cut/coul/long</em> compute the same
|
||||
Coulombic interactions as style <em>nm/cut/coul/cut</em> except that an
|
||||
cutoffs for the NM and Coulombic terms respectively.
|
||||
</P>
|
||||
<P>Styles <I>nm/cut/coul/long</I> compute the same
|
||||
Coulombic interactions as style <I>nm/cut/coul/cut</I> except that an
|
||||
additional damping factor is applied to the Coulombic term so it can
|
||||
be used in conjunction with the <a class="reference internal" href="kspace_style.html"><em>kspace_style</em></a>
|
||||
command and its <em>ewald</em> or <em>pppm</em> option. The Coulombic cutoff
|
||||
be used in conjunction with the <A HREF = "kspace_style.html">kspace_style</A>
|
||||
command and its <I>ewald</I> or <I>pppm</I> option. The Coulombic cutoff
|
||||
specified for this style means that pairwise interactions within this
|
||||
distance are computed directly; interactions outside that distance are
|
||||
computed in reciprocal space.</p>
|
||||
<p>For all of the <em>nm</em> pair styles, the following coefficients must
|
||||
computed in reciprocal space.
|
||||
</P>
|
||||
<P>For all of the <I>nm</I> pair styles, the following coefficients must
|
||||
be defined for each pair of atoms types
|
||||
via the <a class="reference internal" href="pair_coeff.html"><em>pair_coeff</em></a> command as in the
|
||||
via the <A HREF = "pair_coeff.html">pair_coeff</A> command as in the
|
||||
examples above, or in the data file or restart files read by the
|
||||
<a class="reference internal" href="read_data.html"><em>read_data</em></a> or <a class="reference internal" href="read_restart.html"><em>read_restart</em></a>
|
||||
commands.</p>
|
||||
<ul class="simple">
|
||||
<li>E0 (energy units)</li>
|
||||
<li>r0 (distance units)</li>
|
||||
<li>n (unitless)</li>
|
||||
<li>m (unitless)</li>
|
||||
<li>cutoff1 (distance units)</li>
|
||||
<li>cutoff2 (distance units)</li>
|
||||
</ul>
|
||||
<p>The latter 2 coefficients are optional. If not specified, the global
|
||||
<A HREF = "read_data.html">read_data</A> or <A HREF = "read_restart.html">read_restart</A>
|
||||
commands.
|
||||
</P>
|
||||
<UL><LI>E0 (energy units)
|
||||
<LI>r0 (distance units)
|
||||
<LI>n (unitless)
|
||||
<LI>m (unitless)
|
||||
<LI>cutoff1 (distance units)
|
||||
<LI>cutoff2 (distance units)
|
||||
</UL>
|
||||
<P>The latter 2 coefficients are optional. If not specified, the global
|
||||
NM and Coulombic cutoffs specified in the pair_style command are used.
|
||||
If only one cutoff is specified, it is used as the cutoff for both NM
|
||||
and Coulombic interactions for this type pair. If both coefficients
|
||||
are specified, they are used as the NM and Coulombic cutoffs for this
|
||||
type pair. You cannot specify 2 cutoffs for style <em>nm</em>, since it
|
||||
has no Coulombic terms.</p>
|
||||
<p>For <em>nm/cut/coul/long</em> only the NM cutoff can be specified since a
|
||||
type pair. You cannot specify 2 cutoffs for style <I>nm</I>, since it
|
||||
has no Coulombic terms.
|
||||
</P>
|
||||
<P>For <I>nm/cut/coul/long</I> only the NM cutoff can be specified since a
|
||||
Coulombic cutoff cannot be specified for an individual I,J type pair.
|
||||
All type pairs use the same global Coulombic cutoff specified in the
|
||||
pair_style command.</p>
|
||||
<hr class="docutils" />
|
||||
<p><strong>Mixing, shift, table, tail correction, restart, rRESPA info</strong>:</p>
|
||||
<p>These pair styles do not support mixing. Thus, coefficients for all
|
||||
I,J pairs must be specified explicitly.</p>
|
||||
<p>All of the <em>nm</em> pair styles supports the
|
||||
<a class="reference internal" href="pair_modify.html"><em>pair_modify</em></a> shift option for the energy of the pair
|
||||
interaction.</p>
|
||||
<p>The <em>nm/cut/coul/long</em> pair styles support the
|
||||
<a class="reference internal" href="pair_modify.html"><em>pair_modify</em></a> table option since they can tabulate
|
||||
the short-range portion of the long-range Coulombic interaction.</p>
|
||||
<p>All of the <em>nm</em> pair styles support the <a class="reference internal" href="pair_modify.html"><em>pair_modify</em></a>
|
||||
pair_style command.
|
||||
</P>
|
||||
<HR>
|
||||
|
||||
<P><B>Mixing, shift, table, tail correction, restart, rRESPA info</B>:
|
||||
</P>
|
||||
<P>These pair styles do not support mixing. Thus, coefficients for all
|
||||
I,J pairs must be specified explicitly.
|
||||
</P>
|
||||
<P>All of the <I>nm</I> pair styles supports the
|
||||
<A HREF = "pair_modify.html">pair_modify</A> shift option for the energy of the pair
|
||||
interaction.
|
||||
</P>
|
||||
<P>The <I>nm/cut/coul/long</I> pair styles support the
|
||||
<A HREF = "pair_modify.html">pair_modify</A> table option since they can tabulate
|
||||
the short-range portion of the long-range Coulombic interaction.
|
||||
</P>
|
||||
<P>All of the <I>nm</I> pair styles support the <A HREF = "pair_modify.html">pair_modify</A>
|
||||
tail option for adding a long-range tail correction to the energy and
|
||||
pressure for the NM portion of the pair interaction.</p>
|
||||
<p>All of the <em>nm</em> pair styles write their information to <a class="reference internal" href="restart.html"><em>binary restart files</em></a>, so pair_style and pair_coeff commands do not need
|
||||
to be specified in an input script that reads a restart file.</p>
|
||||
<p>All of the <em>nm</em> pair styles can only be used via the <em>pair</em> keyword of
|
||||
the <a class="reference internal" href="run_style.html"><em>run_style respa</em></a> command. They do not support the
|
||||
<em>inner</em>, <em>middle</em>, <em>outer</em> keywords.</p>
|
||||
<hr class="docutils" />
|
||||
<p>Styles with a <em>cuda</em>, <em>gpu</em>, <em>intel</em>, <em>kk</em>, <em>omp</em>, or <em>opt</em> suffix are
|
||||
pressure for the NM portion of the pair interaction.
|
||||
</P>
|
||||
<P>All of the <I>nm</I> pair styles write their information to <A HREF = "restart.html">binary restart
|
||||
files</A>, so pair_style and pair_coeff commands do not need
|
||||
to be specified in an input script that reads a restart file.
|
||||
</P>
|
||||
<P>All of the <I>nm</I> pair styles can only be used via the <I>pair</I> keyword of
|
||||
the <A HREF = "run_style.html">run_style respa</A> command. They do not support the
|
||||
<I>inner</I>, <I>middle</I>, <I>outer</I> keywords.
|
||||
</P>
|
||||
<HR>
|
||||
|
||||
<P>Styles with a <I>cuda</I>, <I>gpu</I>, <I>intel</I>, <I>kk</I>, <I>omp</I>, or <I>opt</I> suffix are
|
||||
functionally the same as the corresponding style without the suffix.
|
||||
They have been optimized to run faster, depending on your available
|
||||
hardware, as discussed in <a class="reference internal" href="Section_accelerate.html"><em>Section_accelerate</em></a>
|
||||
hardware, as discussed in <A HREF = "Section_accelerate.html">Section_accelerate</A>
|
||||
of the manual. The accelerated styles take the same arguments and
|
||||
should produce the same results, except for round-off and precision
|
||||
issues.</p>
|
||||
<p>These accelerated styles are part of the USER-CUDA, GPU, USER-INTEL,
|
||||
issues.
|
||||
</P>
|
||||
<P>These accelerated styles are part of the USER-CUDA, GPU, USER-INTEL,
|
||||
KOKKOS, USER-OMP and OPT packages, respectively. They are only
|
||||
enabled if LAMMPS was built with those packages. See the <a class="reference internal" href="Section_start.html#start-3"><span>Making LAMMPS</span></a> section for more info.</p>
|
||||
<p>You can specify the accelerated styles explicitly in your input script
|
||||
by including their suffix, or you can use the <a class="reference internal" href="Section_start.html#start-7"><span>-suffix command-line switch</span></a> when you invoke LAMMPS, or you can
|
||||
use the <a class="reference internal" href="suffix.html"><em>suffix</em></a> command in your input script.</p>
|
||||
<p>See <a class="reference internal" href="Section_accelerate.html"><em>Section_accelerate</em></a> of the manual for
|
||||
more instructions on how to use the accelerated styles effectively.</p>
|
||||
</div>
|
||||
<div class="section" id="restrictions">
|
||||
<h2>Restrictions<a class="headerlink" href="#restrictions" title="Permalink to this headline">¶</a></h2>
|
||||
<p>These pair styles are part of the MISC package. It is only enabled if
|
||||
LAMMPS was built with that package. See the <a class="reference internal" href="Section_start.html#start-3"><span>Making LAMMPS</span></a> section for more info.</p>
|
||||
</div>
|
||||
<div class="section" id="related-commands">
|
||||
<h2>Related commands<a class="headerlink" href="#related-commands" title="Permalink to this headline">¶</a></h2>
|
||||
<p><a class="reference internal" href="pair_coeff.html"><em>pair_coeff</em></a></p>
|
||||
<p><strong>Default:</strong> none</p>
|
||||
<hr class="docutils" />
|
||||
<p id="clarke"><strong>(Clarke)</strong> Clarke and Smith, J Chem Phys, 84, 2290 (1986).</p>
|
||||
</div>
|
||||
</div>
|
||||
enabled if LAMMPS was built with those packages. See the <A HREF = "Section_start.html#start_3">Making
|
||||
LAMMPS</A> section for more info.
|
||||
</P>
|
||||
<P>You can specify the accelerated styles explicitly in your input script
|
||||
by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
|
||||
switch</A> when you invoke LAMMPS, or you can
|
||||
use the <A HREF = "suffix.html">suffix</A> command in your input script.
|
||||
</P>
|
||||
<P>See <A HREF = "Section_accelerate.html">Section_accelerate</A> of the manual for
|
||||
more instructions on how to use the accelerated styles effectively.
|
||||
</P>
|
||||
<P><B>Restrictions:</B>
|
||||
</P>
|
||||
<P>These pair styles are part of the MISC package. It is only enabled if
|
||||
LAMMPS was built with that package. See the <A HREF = "Section_start.html#start_3">Making
|
||||
LAMMPS</A> section for more info.
|
||||
</P>
|
||||
<P><B>Related commands:</B>
|
||||
</P>
|
||||
<P><A HREF = "pair_coeff.html">pair_coeff</A>
|
||||
</P>
|
||||
<P><B>Default:</B> none
|
||||
</P>
|
||||
<HR>
|
||||
|
||||
<A NAME = "Clarke"></A>
|
||||
|
||||
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|
||||
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|
||||
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|
||||
|
||||
|
||||
<hr/>
|
||||
|
||||
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|
||||
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|
||||
© Copyright .
|
||||
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|
||||
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|
||||
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|
||||
<P><B>(Clarke)</B> Clarke and Smith, J Chem Phys, 84, 2290 (1986).
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|
||||
|
||||
Reference in New Issue
Block a user