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remove backslash escapes for underscore in doc references

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Axel Kohlmeyer
2020-01-23 16:52:05 -05:00
parent 958b8d96a9
commit 72d8bea459
554 changed files with 2856 additions and 2856 deletions
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16
doc/src/Howto_output.rst
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@ -88,21 +88,21 @@ Thermodynamic output
---------------------------------
The frequency and format of thermodynamic output is set by the
:doc:`thermo <thermo>`, :doc:`thermo\_style <thermo_style>`, and
:doc:`thermo\_modify <thermo_modify>` commands. The
:doc:`thermo\_style <thermo_style>` command also specifies what values
:doc:`thermo <thermo>`, :doc:`thermo_style <thermo_style>`, and
:doc:`thermo_modify <thermo_modify>` commands. The
:doc:`thermo_style <thermo_style>` command also specifies what values
are calculated and written out. Pre-defined keywords can be specified
(e.g. press, etotal, etc). Three additional kinds of keywords can
also be specified (c\_ID, f\_ID, v\_name), where a :doc:`compute <compute>`
or :doc:`fix <fix>` or :doc:`variable <variable>` provides the value to be
output. In each case, the compute, fix, or variable must generate
global values for input to the :doc:`thermo\_style custom <dump>`
global values for input to the :doc:`thermo_style custom <dump>`
command.
Note that thermodynamic output values can be "extensive" or
"intensive". The former scale with the number of atoms in the system
(e.g. total energy), the latter do not (e.g. temperature). The
setting for :doc:`thermo\_modify norm <thermo_modify>` determines whether
setting for :doc:`thermo_modify norm <thermo_modify>` determines whether
extensive quantities are normalized or not. Computes and fixes
produce either extensive or intensive values; see their individual doc
pages for details. :doc:`Equal-style variables <variable>` produce only
@ -116,7 +116,7 @@ Dump file output
---------------------------
Dump file output is specified by the :doc:`dump <dump>` and
:doc:`dump\_modify <dump_modify>` commands. There are several
:doc:`dump_modify <dump_modify>` commands. There are several
pre-defined formats (dump atom, dump xtc, etc).
There is also a :doc:`dump custom <dump>` format where the user
@ -151,7 +151,7 @@ specifies one or more quantities as input. These can be global
:doc:`compute <compute>` values, global :doc:`fix <fix>` values, or
:doc:`variables <variable>` of any style except the atom style which
produces per-atom values. Since a variable can refer to keywords used
by the :doc:`thermo\_style custom <thermo_style>` command (like temp or
by the :doc:`thermo_style custom <thermo_style>` command (like temp or
press) and individual per-atom values, a wide variety of quantities
can be time averaged and/or output in this way. If the inputs are one
or more scalar values, then the fix generate a global scalar or vector
@ -304,7 +304,7 @@ vector input could be a column of an array.
+--------------------------------------------------------+----------------------------------------------+-------------------------------------------+
| Command | Input | Output |
+--------------------------------------------------------+----------------------------------------------+-------------------------------------------+
| :doc:`thermo\_style custom <thermo_style>` | global scalars | screen, log file |
| :doc:`thermo_style custom <thermo_style>` | global scalars | screen, log file |
+--------------------------------------------------------+----------------------------------------------+-------------------------------------------+
| :doc:`dump custom <dump>` | per-atom vectors | dump file |
+--------------------------------------------------------+----------------------------------------------+-------------------------------------------+