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remove backslash escapes for underscore in doc references

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This commit is contained in:
Axel Kohlmeyer
2020-01-23 16:52:05 -05:00
parent 958b8d96a9
commit 72d8bea459
554 changed files with 2856 additions and 2856 deletions
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10
doc/src/Howto_tip4p.rst
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@ -11,12 +11,12 @@ angle style of *harmonic* or *charmm* should also be used.
A TIP4P model is run with LAMMPS using either this command
for a cutoff model:
:doc:`pair\_style lj/cut/tip4p/cut <pair_lj>`
:doc:`pair_style lj/cut/tip4p/cut <pair_lj>`
or these two commands for a long-range model:
* :doc:`pair\_style lj/cut/tip4p/long <pair_lj>`
* :doc:`kspace\_style pppm/tip4p <kspace_style>`
* :doc:`pair_style lj/cut/tip4p/long <pair_lj>`
* :doc:`kspace_style pppm/tip4p <kspace_style>`
For both models, the bond lengths and bond angles should be held fixed
using the :doc:`fix shake <fix_shake>` command.
@ -24,7 +24,7 @@ using the :doc:`fix shake <fix_shake>` command.
These are the additional parameters (in real units) to set for O and H
atoms and the water molecule to run a rigid TIP4P model with a cutoff
:ref:`(Jorgensen) <Jorgensen5>`. Note that the OM distance is specified in
the :doc:`pair\_style <pair_style>` command, not as part of the pair
the :doc:`pair_style <pair_style>` command, not as part of the pair
coefficients.
| O mass = 15.9994
@ -95,7 +95,7 @@ typically best in an efficiency sense to use a LJ cutoff >= Coulomb
cutoff + 2\*(OM distance), to shrink the size of the neighbor list.
This leads to slightly larger cost for the long-range calculation, so
you can test the trade-off for your model. The OM distance and the LJ
and Coulombic cutoffs are set in the :doc:`pair\_style lj/cut/tip4p/long <pair_lj>` command.
and Coulombic cutoffs are set in the :doc:`pair_style lj/cut/tip4p/long <pair_lj>` command.
Wikipedia also has a nice article on `water models <http://en.wikipedia.org/wiki/Water_model>`_.