Fix Colvars output files not written with "run 0"
See: https://github.com/Colvars/colvars/commit/ff2f0d39ee5 which fixes a bug introduced in: https://github.com/Colvars/colvars/commit/1e964a542b The message applies to NAMD, but the logic used in LAMMPS when handling "run 0" is very similar. The Colvars version string is also updated, however this commit does not include other changes, such as the following: https://github.com/Colvars/colvars/pull/419 which were not fully completed before the LAMMPS Summer 2021 finalization.
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