Create in.slater
This commit is contained in:
committed by
GitHub
parent
de9691a751
commit
7849de15b0
60
examples/USER/misc/slater/in.slater
Normal file
60
examples/USER/misc/slater/in.slater
Normal file
@ -0,0 +1,60 @@
|
|||||||
|
# Bulk polyelectrolyte as described in section IV of J. Chem. Phys. 125, 224107 (2006)
|
||||||
|
|
||||||
|
boundary p p p
|
||||||
|
|
||||||
|
units lj
|
||||||
|
atom_style charge
|
||||||
|
|
||||||
|
region my_sim_box block 0.0 10.0 0.0 10.0 0.0 10.0
|
||||||
|
create_box 3 my_sim_box
|
||||||
|
|
||||||
|
create_atoms 1 random 2804 100 my_sim_box
|
||||||
|
create_atoms 2 random 98 200 my_sim_box
|
||||||
|
create_atoms 3 random 98 300 my_sim_box
|
||||||
|
|
||||||
|
set type 2 charge -1.0
|
||||||
|
set type 3 charge 1.0
|
||||||
|
|
||||||
|
comm_modify mode single vel yes
|
||||||
|
|
||||||
|
mass 1 1.0
|
||||||
|
mass 2 1.0
|
||||||
|
mass 3 1.0
|
||||||
|
|
||||||
|
pair_style hybrid/overlay dpd 1.0 1.0 245455 coul/slater/long 0.929 3.0
|
||||||
|
pair_coeff * * dpd 25.0 4.5
|
||||||
|
pair_coeff * * coul/slater/long
|
||||||
|
|
||||||
|
kspace_style ewald 0.00001
|
||||||
|
dielectric 1.0
|
||||||
|
|
||||||
|
neighbor 2.0 bin
|
||||||
|
neigh_modify every 1 delay 0 check no once no
|
||||||
|
|
||||||
|
timestep 0.02
|
||||||
|
|
||||||
|
fix 2 all nve
|
||||||
|
|
||||||
|
thermo 10
|
||||||
|
thermo_style custom step spcpu temp press etotal pe ke ecoul elong evdwl
|
||||||
|
thermo_modify line one
|
||||||
|
|
||||||
|
run 100000
|
||||||
|
write_data data.after_equilibration
|
||||||
|
|
||||||
|
compute RDF_1_1 all rdf 50 1 1 cutoff 3.0
|
||||||
|
compute RDF_1_2 all rdf 50 1 2 cutoff 3.0
|
||||||
|
compute RDF_1_3 all rdf 50 1 3 cutoff 3.0
|
||||||
|
compute RDF_2_2 all rdf 50 2 2 cutoff 3.0
|
||||||
|
compute RDF_2_3 all rdf 50 2 3 cutoff 3.0
|
||||||
|
compute RDF_3_3 all rdf 50 3 3 cutoff 3.0
|
||||||
|
|
||||||
|
fix 11 all ave/time 50 1 50 c_RDF_1_1[*] file tmp_1_1.rdf mode vector
|
||||||
|
fix 12 all ave/time 50 1 50 c_RDF_1_2[*] file tmp_1_2.rdf mode vector
|
||||||
|
fix 13 all ave/time 50 1 50 c_RDF_1_3[*] file tmp_1_3.rdf mode vector
|
||||||
|
fix 14 all ave/time 50 1 50 c_RDF_2_2[*] file tmp_2_2.rdf mode vector
|
||||||
|
fix 15 all ave/time 50 1 50 c_RDF_2_3[*] file tmp_2_3.rdf mode vector
|
||||||
|
fix 16 all ave/time 50 1 50 c_RDF_3_3[*] file tmp_3_3.rdf mode vector
|
||||||
|
|
||||||
|
run 10000
|
||||||
|
write_data data.after_production_run
|
||||||
Reference in New Issue
Block a user