diff --git a/doc/Section_tools.html b/doc/Section_tools.html index 94ac4c028b..603ffec838 100644 --- a/doc/Section_tools.html +++ b/doc/Section_tools.html @@ -63,6 +63,7 @@ own sub-directories with their own Makefiles.
The polybond sub-directory contains a Python-based tool useful for +performing "programmable polymer bonding". The Python file +lmpsdata.py provides a "Lmpsdata" class with various methods which can +be invoked by a user-written Python script to create data files with +complex bonding topologies. +
+See the Manual.pdf for details and example scripts. +
+This tool was written by Zachary Kraus at Georgia Tech. +
+The pymol_asphere sub-directory contains a tool for converting a diff --git a/doc/Section_tools.txt b/doc/Section_tools.txt index 4dd3883fb7..c55d91c55f 100644 --- a/doc/Section_tools.txt +++ b/doc/Section_tools.txt @@ -59,6 +59,7 @@ own sub-directories with their own Makefiles. "moltemplate"_#moltemplate "msi2lmp"_#msi "phonon"_#phonon +"polymer bonding"_#polybond "pymol_asphere"_#pymol "python"_#pythontools "reax"_#reax @@ -352,6 +353,20 @@ University. :line +polymer bonding tool :h4,link(polybond) + +The polybond sub-directory contains a Python-based tool useful for +performing "programmable polymer bonding". The Python file +lmpsdata.py provides a "Lmpsdata" class with various methods which can +be invoked by a user-written Python script to create data files with +complex bonding topologies. + +See the Manual.pdf for details and example scripts. + +This tool was written by Zachary Kraus at Georgia Tech. + +:line + pymol_asphere tool :h4,link(pymol) The pymol_asphere sub-directory contains a tool for converting a