From 7e779d16de45ac9fff68eaec1b1ebeaf3a0f6b2b Mon Sep 17 00:00:00 2001 From: Axel Kohlmeyer Date: Mon, 12 Nov 2018 21:33:37 -0500 Subject: [PATCH] correct broken links in manual reported by 'make html' --- doc/src/fix_hyper_global.txt | 9 ++++----- doc/src/fix_hyper_local.txt | 8 ++++---- doc/src/hyper.txt | 2 +- 3 files changed, 9 insertions(+), 10 deletions(-) diff --git a/doc/src/fix_hyper_global.txt b/doc/src/fix_hyper_global.txt index 55c63547af..27396491d2 100644 --- a/doc/src/fix_hyper_global.txt +++ b/doc/src/fix_hyper_global.txt @@ -190,11 +190,10 @@ The "fix_modify"_fix_modify.html {energy} option is supported by this fix to add the energy of the bias potential to the the system's potential energy as part of "thermodynamic output"_thermo_style.html. -This fix computes a global scalar and global vector of length 11, -which can be accessed by various "output -commands"_Section_howto.html#howto_15. The scalar is the magnitude of -the bias potential (energy units) applied on the current timestep. -The vector stores the following quantities: +This fix computes a global scalar and global vector of length 11, which +can be accessed by various "output commands"_Howto_output.html". The +scalar is the magnitude of the bias potential (energy units) applied on +the current timestep. The vector stores the following quantities: 1 = boost factor on this step (unitless) 2 = max strain Eij of any bond on this step (unitless) diff --git a/doc/src/fix_hyper_local.txt b/doc/src/fix_hyper_local.txt index dfdd22251a..4af6ab5a55 100644 --- a/doc/src/fix_hyper_local.txt +++ b/doc/src/fix_hyper_local.txt @@ -62,7 +62,7 @@ bond-boost form of a bias potential for HD is due to Miron and Fichthorn as described in "(Miron)"_#Mironlhd. To understand this description, you should first read the description -of the GHD algorithm on the "fix hyper/global"_fix_hyper/global.html +of the GHD algorithm on the "fix hyper/global"_fix_hyper_global.html doc page. This description of LHD builds on the GHD description. The definition of bonds, Eij, and Emax are the same for GHD and LHD. @@ -284,7 +284,7 @@ potential energy as part of "thermodynamic output"_thermo_style.html. This fix computes a global scalar and global vector of length 23, which can be accessed by various "output -commands"_Section_howto.html#howto_15. The scalar is the magnitude of +commands"_Howto_output.html. The scalar is the magnitude of the bias potential (energy units) applied on the current timestep, summed over all biased bonds. The vector stores the following quantities: @@ -385,8 +385,8 @@ minimization"_minimize.html. [Restrictions:] This fix is part of the REPLICA package. It is only enabled if LAMMPS -was built with that package. See the "Making -LAMMPS"_Section_start.html#start_3 section for more info. +was built with that package. See the "Build package"_Build_package.html +doc page for more info. [Related commands:] diff --git a/doc/src/hyper.txt b/doc/src/hyper.txt index b6fe27b9c7..0ea4ac781b 100644 --- a/doc/src/hyper.txt +++ b/doc/src/hyper.txt @@ -187,6 +187,6 @@ The option defaults are min = 0.1 0.1 40 50 and time = steps. [(Voter2013)] S. Y. Kim, D. Perez, A. F. Voter, J Chem Phys, 139, 144110 (2013). -:link(Voter2002prd) +:link(Voter2002hd) [(Voter2002)] Voter, Montalenti, Germann, Annual Review of Materials Research 32, 321 (2002).