diff --git a/doc/compute_saed.html b/doc/compute_saed.html
index 86241dd067..f73f77b764 100644
--- a/doc/compute_saed.html
+++ b/doc/compute_saed.html
@@ -169,7 +169,7 @@ fix saed/vtk 1 1 1 c_2 file Ni_000.saed
 <div class="section" id="description">
 <h2>Description<a class="headerlink" href="#description" title="Permalink to this headline">¶</a></h2>
 <p>Define a computation that calculates electron diffraction intensity as
-described in <a class="reference internal" href="compute_xrd.html#coleman"><span>(Coleman)</span></a> on a mesh of reciprocal lattice nodes
+described in <a class="reference internal" href="fix_saed_vtk.html#coleman"><span>(Coleman)</span></a> on a mesh of reciprocal lattice nodes
 defined by the entire simulation domain (or manually) using simulated
 radiation of wavelength lambda.</p>
 <p>The electron diffraction intensity I at each reciprocal lattice point
diff --git a/doc/compute_xrd.html b/doc/compute_xrd.html
index e00eca5143..1207b657d9 100644
--- a/doc/compute_xrd.html
+++ b/doc/compute_xrd.html
@@ -167,7 +167,7 @@ fix 2 all ave/histo/weight 1 1 1 10 100 250 c_2[1] c_2[2] mode vector file Deg2T
 <div class="section" id="description">
 <h2>Description<a class="headerlink" href="#description" title="Permalink to this headline">¶</a></h2>
 <p>Define a computation that calculates x-ray diffraction intensity as described
-in <a class="reference internal" href="#coleman"><span>(Coleman)</span></a> on a mesh of reciprocal lattice nodes defined
+in <a class="reference internal" href="fix_saed_vtk.html#coleman"><span>(Coleman)</span></a> on a mesh of reciprocal lattice nodes defined
 by the entire simulation domain (or manually) using a simulated radiation
 of wavelength lambda.</p>
 <p>The x-ray diffraction intensity, I, at each reciprocal lattice point, k,
diff --git a/doc/set.html b/doc/set.html
index 425215ae14..2f79b9edac 100644
--- a/doc/set.html
+++ b/doc/set.html
@@ -131,20 +131,11 @@
 <div class="highlight-python"><div class="highlight"><pre>set style ID keyword values ...
 </pre></div>
 </div>
-<ul>
-<li><p class="first">style = <em>atom</em> or <em>type</em> or <em>mol</em> or <em>group</em> or <em>region</em></p>
-</li>
-<li><p class="first">ID = atom ID range or type range or mol ID range or group ID or region ID</p>
-</li>
-<li><p class="first">one or more keyword/value pairs may be appended</p>
-</li>
-<li><dl class="first docutils">
-<dt>keyword = <em>type</em> or <em>type/fraction</em> or <em>mol</em> or <em>x</em> or <em>y</em> or <em>z</em> or           <em>charge</em> or <em>dipole</em> or <em>dipole/random</em> or <em>quat</em> or     <em>quat/random</em> or <em>diameter</em> or <em>shape</em> or       <em>length</em> or <em>tri</em> or <em>theta</em> or <em>theta/random</em> or <em>angmom</em> or <em>omega</em> or        <em>mass</em> or <em>density</em> or <em>volume</em> or <em>image</em> or</dt>
-<dd><p class="first last"><em>bond</em> or <em>angle</em> or <em>dihedral</em> or <em>improper</em> or
-<em>meso_e</em> or <em>meso_cv</em> or <em>meso_rho</em> or          <em>smd_contact_radius</em> or <em>smd_mass_density</em> or           <em>i_name</em> or <em>d_name</em></p>
-</dd>
-</dl>
-</li>
+<ul class="simple">
+<li>style = <em>atom</em> or <em>type</em> or <em>mol</em> or <em>group</em> or <em>region</em></li>
+<li>ID = atom ID range or type range or mol ID range or group ID or region ID</li>
+<li>one or more keyword/value pairs may be appended</li>
+<li>keyword = <em>type</em> or <em>type/fraction</em> or <em>mol</em> or <em>x</em> or <em>y</em> or <em>z</em> or           <em>charge</em> or <em>dipole</em> or <em>dipole/random</em> or <em>quat</em> or     <em>quat/random</em> or <em>diameter</em> or <em>shape</em> or       <em>length</em> or <em>tri</em> or <em>theta</em> or <em>theta/random</em> or           <em>angmom</em> or <em>omega</em> or      <em>mass</em> or <em>density</em> or <em>volume</em> or <em>image</em> or           <em>bond</em> or <em>angle</em> or <em>dihedral</em> or <em>improper</em> or        <em>meso_e</em> or <em>meso_cv</em> or <em>meso_rho</em> or          <em>smd_contact_radius</em> or <em>smd_mass_density</em> or           <em>i_name</em> or <em>d_name</em></li>
 </ul>
 <pre class="literal-block">
 <em>type</em> value = atom type
diff --git a/doc/set.txt b/doc/set.txt
index 58495cff6d..7dfa8bf129 100644
--- a/doc/set.txt
+++ b/doc/set.txt
@@ -18,9 +18,10 @@ one or more keyword/value pairs may be appended :l
 keyword = {type} or {type/fraction} or {mol} or {x} or {y} or {z} or \
           {charge} or {dipole} or {dipole/random} or {quat} or \
 	  {quat/random} or {diameter} or {shape} or \
-	  {length} or {tri} or {theta} or {theta/random} or {angmom} or {omega} or \
-	  {mass} or {density} or {volume} or {image} or
-	  {bond} or {angle} or {dihedral} or {improper} or
+	  {length} or {tri} or {theta} or {theta/random} or \
+          {angmom} or {omega} or \
+	  {mass} or {density} or {volume} or {image} or \
+	  {bond} or {angle} or {dihedral} or {improper} or \
 	  {meso_e} or {meso_cv} or {meso_rho} or \
 	  {smd_contact_radius} or {smd_mass_density} or \
           {i_name} or {d_name} :l