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Remove redundant links and wording

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This commit is contained in:
Richard Berger
2020-10-16 17:13:31 -04:00
parent eaa75417f2
commit 853b5ea576
1 changed files with 13 additions and 16 deletions
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doc/src/Python_examples.rst
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@ -27,7 +27,7 @@ distribution.
+----------------------------------------------------------------+--------------------------------------------------+
| real-time viz via some viz package | vizplotgui_tool.py |
+----------------------------------------------------------------+--------------------------------------------------+
| combination of viz_tool.py and plot.py and gui.py | |
| combination of viz_tool.py and plot.py and gui.py | |
+----------------------------------------------------------------+--------------------------------------------------+
----------
@ -37,18 +37,18 @@ with "gl" or "atomeye" or "pymol" or "vmd", depending on what
visualization package you have installed.
Note that for GL, you need to be able to run the Pizza.py GL tool,
which is included in the pizza sub-directory. See the `Pizza.py doc pages <pizza_>`_ for more info:
which is included in the pizza sub-directory. See the Pizza.py doc pages for more info:
* `https://pizza.sandia.gov <pizza_>`_
.. _pizza: https://pizza.sandia.gov
Note that for AtomEye, you need version 3, and there is a line in the
scripts that specifies the path and name of the executable. See the
AtomEye WWW pages `here <atomeye_>`_ or `here <atomeye3_>`_ for more details:
AtomEye webpages for more details:
.. parsed-literal::
http://li.mit.edu/Archive/Graphics/A/
http://li.mit.edu/Archive/Graphics/A3/A3.html
* `http://li.mit.edu/Archive/Graphics/A/ <atomeye_>`_
* `http://li.mit.edu/Archive/Graphics/A3/A3.html <atomeye3_>`_
.. _atomeye: http://li.mit.edu/Archive/Graphics/A/
@ -59,13 +59,10 @@ capability needed by these Python scripts.
Note that for PyMol, you need to have built and installed the
open-source version of PyMol in your Python, so that you can import it
from a Python script. See the PyMol WWW pages `here <pymolhome_>`_ or
`here <pymolopen_>`_ for more details:
from a Python script. See the PyMol webpages for more details:
.. parsed-literal::
https://www.pymol.org
https://github.com/schrodinger/pymol-open-source
* `https://www.pymol.org <pymolhome_>`_
* `https://github.com/schrodinger/pymol-open-source <pymolopen_>`_
.. _pymolhome: https://www.pymol.org
@ -74,15 +71,15 @@ from a Python script. See the PyMol WWW pages `here <pymolhome_>`_ or
The latter link is to the open-source version.
Note that for VMD, you need a fairly current version (1.8.7 works for
me) and there are some lines in the pizza/vmd.py script for 4 PIZZA
me) and there are some lines in the ``pizza/vmd.py`` script for 4 PIZZA
variables that have to match the VMD installation on your system.
----------
See the python/README file for instructions on how to run them and the
See the ``python/README`` file for instructions on how to run them and the
source code for individual scripts for comments about what they do.
Here are screenshots of the vizplotgui_tool.py script in action for
Here are screenshots of the ``vizplotgui_tool.py`` script in action for
different visualization package options:
.. |pyex1| image:: img/screenshot_gl.jpg