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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13060 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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sjplimp
2015-02-04 22:19:01 +00:00
parent 2b80ac3d86
commit 88cd36c8a2
10 changed files with 71 additions and 7 deletions
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6
doc/Section_commands.html
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@ -479,11 +479,11 @@ KOKKOS, o = USER-OMP, t = OPT.
<TR ALIGN="center"><TD ><A HREF = "pair_none.html">none</A></TD><TD ><A HREF = "pair_hybrid.html">hybrid</A></TD><TD ><A HREF = "pair_hybrid.html">hybrid/overlay</A></TD><TD ><A HREF = "pair_adp.html">adp (o)</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_airebo.html">airebo (o)</A></TD><TD ><A HREF = "pair_beck.html">beck (go)</A></TD><TD ><A HREF = "pair_body.html">body</A></TD><TD ><A HREF = "pair_bop.html">bop</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_born.html">born (go)</A></TD><TD ><A HREF = "pair_born.html">born/coul/long (cgo)</A></TD><TD ><A HREF = "pair_born.html">born/coul/msm (o)</A></TD><TD ><A HREF = "pair_born.html">born/coul/wolf (go)</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_brownian.html">brownian (o)</A></TD><TD ><A HREF = "pair_brownian.html">brownian/poly (o)</A></TD><TD ><A HREF = "pair_buck.html">buck (cgo)</A></TD><TD ><A HREF = "pair_buck.html">buck/coul/cut (cgo)</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_brownian.html">brownian (o)</A></TD><TD ><A HREF = "pair_brownian.html">brownian/poly (o)</A></TD><TD ><A HREF = "pair_buck.html">buck (cgko)</A></TD><TD ><A HREF = "pair_buck.html">buck/coul/cut (cgo)</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_buck.html">buck/coul/long (cgo)</A></TD><TD ><A HREF = "pair_buck.html">buck/coul/msm (o)</A></TD><TD ><A HREF = "pair_buck_long.html">buck/long/coul/long (o)</A></TD><TD ><A HREF = "pair_colloid.html">colloid (go)</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_comb.html">comb (o)</A></TD><TD ><A HREF = "pair_comb.html">comb3</A></TD><TD ><A HREF = "pair_coul.html">coul/cut (gko)</A></TD><TD ><A HREF = "pair_coul.html">coul/debye (go)</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_coul.html">coul/dsf (go)</A></TD><TD ><A HREF = "pair_coul.html">coul/long (go)</A></TD><TD ><A HREF = "pair_coul.html">coul/msm</A></TD><TD ><A HREF = "pair_coul.html">coul/wolf (o)</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_dpd.html">dpd (o)</A></TD><TD ><A HREF = "pair_dpd.html">dpd/tstat (o)</A></TD><TD ><A HREF = "pair_dsmc.html">dsmc</A></TD><TD ><A HREF = "pair_eam.html">eam (cgot)</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_coul.html">coul/dsf (gko)</A></TD><TD ><A HREF = "pair_coul.html">coul/long (go)</A></TD><TD ><A HREF = "pair_coul.html">coul/msm</A></TD><TD ><A HREF = "pair_coul.html">coul/wolf (ko)</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_dpd.html">dpd (o)</A></TD><TD ><A HREF = "pair_dpd.html">dpd/tstat (o)</A></TD><TD ><A HREF = "pair_dsmc.html">dsmc</A></TD><TD ><A HREF = "pair_eam.html">eam (cgkot)</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_eam.html">eam/alloy (cgot)</A></TD><TD ><A HREF = "pair_eam.html">eam/fs (cgot)</A></TD><TD ><A HREF = "pair_eim.html">eim (o)</A></TD><TD ><A HREF = "pair_gauss.html">gauss (go)</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_gayberne.html">gayberne (gio)</A></TD><TD ><A HREF = "pair_gran.html">gran/hertz/history (o)</A></TD><TD ><A HREF = "pair_gran.html">gran/hooke (co)</A></TD><TD ><A HREF = "pair_gran.html">gran/hooke/history (o)</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "pair_hbond_dreiding.html">hbond/dreiding/lj (o)</A></TD><TD ><A HREF = "pair_hbond_dreiding.html">hbond/dreiding/morse (o)</A></TD><TD ><A HREF = "pair_kim.html">kim</A></TD><TD ><A HREF = "pair_lcbop.html">lcbop</A></TD></TR>

8
doc/Section_commands.txt
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@ -732,7 +732,7 @@ KOKKOS, o = USER-OMP, t = OPT.
"born/coul/wolf (go)"_pair_born.html,
"brownian (o)"_pair_brownian.html,
"brownian/poly (o)"_pair_brownian.html,
"buck (cgo)"_pair_buck.html,
"buck (cgko)"_pair_buck.html,
"buck/coul/cut (cgo)"_pair_buck.html,
"buck/coul/long (cgo)"_pair_buck.html,
"buck/coul/msm (o)"_pair_buck.html,
@ -742,14 +742,14 @@ KOKKOS, o = USER-OMP, t = OPT.
"comb3"_pair_comb.html,
"coul/cut (gko)"_pair_coul.html,
"coul/debye (go)"_pair_coul.html,
"coul/dsf (go)"_pair_coul.html,
"coul/dsf (gko)"_pair_coul.html,
"coul/long (go)"_pair_coul.html,
"coul/msm"_pair_coul.html,
"coul/wolf (o)"_pair_coul.html,
"coul/wolf (ko)"_pair_coul.html,
"dpd (o)"_pair_dpd.html,
"dpd/tstat (o)"_pair_dpd.html,
"dsmc"_pair_dsmc.html,
"eam (cgot)"_pair_eam.html,
"eam (cgkot)"_pair_eam.html,
"eam/alloy (cgot)"_pair_eam.html,
"eam/fs (cgot)"_pair_eam.html,
"eim (o)"_pair_eim.html,

25
doc/fix_langevin.html
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@ -11,6 +11,8 @@
<H3>fix langevin command
</H3>
<H3>fix langevin/kk command
</H3>
<P><B>Syntax:</B>
</P>
<PRE>fix ID group-ID langevin Tstart Tstop damp seed keyword values ...
@ -268,6 +270,29 @@ generates an average temperature of 220 K, instead of 300 K.
</P>
<HR>
<P>Styles with a <I>cuda</I>, <I>gpu</I>, <I>intel</I>, <I>kk</I>, <I>omp</I>, or <I>opt</I> suffix are
functionally the same as the corresponding style without the suffix.
They have been optimized to run faster, depending on your available
hardware, as discussed in <A HREF = "Section_accelerate.html">Section_accelerate</A>
of the manual. The accelerated styles take the same arguments and
should produce the same results, except for round-off and precision
issues.
</P>
<P>These accelerated styles are part of the USER-CUDA, GPU, USER-INTEL,
KOKKOS, USER-OMP and OPT packages, respectively. They are only
enabled if LAMMPS was built with those packages. See the <A HREF = "Section_start.html#start_3">Making
LAMMPS</A> section for more info.
</P>
<P>You can specify the accelerated styles explicitly in your input script
by including their suffix, or you can use the <A HREF = "Section_start.html#start_7">-suffix command-line
switch</A> when you invoke LAMMPS, or you can
use the <A HREF = "suffix.html">suffix</A> command in your input script.
</P>
<P>See <A HREF = "Section_accelerate.html">Section_accelerate</A> of the manual for
more instructions on how to use the accelerated styles effectively.
</P>
<HR>
<P><B>Restart, fix_modify, output, run start/stop, minimize info:</B>
</P>
<P>No information about this fix is written to <A HREF = "restart.html">binary restart

24
doc/fix_langevin.txt
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@ -7,6 +7,7 @@
:line
fix langevin command :h3
fix langevin/kk command :h3
[Syntax:]
@ -256,6 +257,29 @@ generates an average temperature of 220 K, instead of 300 K.
:line
Styles with a {cuda}, {gpu}, {intel}, {kk}, {omp}, or {opt} suffix are
functionally the same as the corresponding style without the suffix.
They have been optimized to run faster, depending on your available
hardware, as discussed in "Section_accelerate"_Section_accelerate.html
of the manual. The accelerated styles take the same arguments and
should produce the same results, except for round-off and precision
issues.
These accelerated styles are part of the USER-CUDA, GPU, USER-INTEL,
KOKKOS, USER-OMP and OPT packages, respectively. They are only
enabled if LAMMPS was built with those packages. See the "Making
LAMMPS"_Section_start.html#start_3 section for more info.
You can specify the accelerated styles explicitly in your input script
by including their suffix, or you can use the "-suffix command-line
switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
use the "suffix"_suffix.html command in your input script.
See "Section_accelerate"_Section_accelerate.html of the manual for
more instructions on how to use the accelerated styles effectively.
:line
[Restart, fix_modify, output, run start/stop, minimize info:]
No information about this fix is written to "binary restart

2
doc/pair_buck.html
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@ -15,6 +15,8 @@
</H3>
<H3>pair_style buck/gpu command
</H3>
<H3>pair_style buck/kk command
</H3>
<H3>pair_style buck/omp command
</H3>
<H3>pair_style buck/coul/cut command

1
doc/pair_buck.txt
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@ -9,6 +9,7 @@
pair_style buck command :h3
pair_style buck/cuda command :h3
pair_style buck/gpu command :h3
pair_style buck/kk command :h3
pair_style buck/omp command :h3
pair_style buck/coul/cut command :h3
pair_style buck/coul/cut/cuda command :h3

6
doc/pair_coul.html
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@ -13,6 +13,8 @@
</H3>
<H3>pair_style coul/cut/gpu command
</H3>
<H3>pair_style coul/cut/kk command
</H3>
<H3>pair_style coul/cut/omp command
</H3>
<H3>pair_style coul/debye command
@ -25,6 +27,8 @@
</H3>
<H3>pair_style coul/dsf/gpu command
</H3>
<H3>pair_style coul/dsf/kk command
</H3>
<H3>pair_style coul/dsf/omp command
</H3>
<H3>pair_style coul/long command
@ -39,6 +43,8 @@
</H3>
<H3>pair_style coul/wolf command
</H3>
<H3>pair_style coul/wolf/kk command
</H3>
<H3>pair_style coul/wolf/omp command
</H3>
<H3>pair_style tip4p/cut command

3
doc/pair_coul.txt
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@ -8,12 +8,14 @@
pair_style coul/cut command :h3
pair_style coul/cut/gpu command :h3
pair_style coul/cut/kk command :h3
pair_style coul/cut/omp command :h3
pair_style coul/debye command :h3
pair_style coul/debye/gpu command :h3
pair_style coul/debye/omp command :h3
pair_style coul/dsf command :h3
pair_style coul/dsf/gpu command :h3
pair_style coul/dsf/kk command :h3
pair_style coul/dsf/omp command :h3
pair_style coul/long command :h3
pair_style coul/long/omp command :h3
@ -21,6 +23,7 @@ pair_style coul/long/gpu command :h3
pair_style coul/msm command :h3
pair_style coul/msm/omp command :h3
pair_style coul/wolf command :h3
pair_style coul/wolf/kk command :h3
pair_style coul/wolf/omp command :h3
pair_style tip4p/cut command :h3
pair_style tip4p/long command :h3

2
doc/pair_eam.html
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@ -15,6 +15,8 @@
</H3>
<H3>pair_style eam/gpu command
</H3>
<H3>pair_style eam/kk command
</H3>
<H3>pair_style eam/omp command
</H3>
<H3>pair_style eam/opt command

1
doc/pair_eam.txt
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@ -9,6 +9,7 @@
pair_style eam command :h3
pair_style eam/cuda command :h3
pair_style eam/gpu command :h3
pair_style eam/kk command :h3
pair_style eam/omp command :h3
pair_style eam/opt command :h3
pair_style eam/alloy command :h3