add a custom python script to check the completeness of tests inputs
This commit is contained in:
Axel Kohlmeyer
218
unittest/force-styles/check_tests.py
Executable file
218
unittest/force-styles/check_tests.py
Executable file
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#!/usr/bin/env python3
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from __future__ import print_function
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from glob import glob
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from argparse import ArgumentParser
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import os, re, sys
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parser = ArgumentParser(prog='check_tests.py',
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description="Check force tests for completeness")
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parser.add_argument("-v", "--verbose",
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action='store_const',
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const=True, default=False,
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help="Enable verbose output")
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parser.add_argument("-t", "--tests",
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help="Path to LAMMPS test YAML format input files")
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parser.add_argument("-s", "--src",
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help="Path to LAMMPS sources")
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args = parser.parse_args()
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verbose = args.verbose
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src = args.src
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tests = args.tests
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if not src:
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src = os.path.join('.','..','..','src')
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if not tests:
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tests = os.path.join(src,'..','unittest','force-styles','tests')
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try:
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src = os.path.abspath(os.path.expanduser(src))
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tests = os.path.abspath(os.path.expanduser(tests))
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except:
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parser.print_help()
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sys.exit(1)
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if not os.path.isdir(src):
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sys.exit("LAMMPS source path %s does not exist" % src)
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if not os.path.isdir(tests):
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sys.exit("LAMMPS test inputs path %s does not exist" % tests)
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headers = glob(os.path.join(src, '*', '*.h'))
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headers += glob(os.path.join(src, '*.h'))
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angle = {}
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bond = {}
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compute = {}
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dihedral = {}
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dump = {}
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fix = {}
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improper = {}
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kspace = {}
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pair = {}
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total = 0
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upper = re.compile("[A-Z]+")
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gpu = re.compile("(.+)/gpu$")
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intel = re.compile("(.+)/intel$")
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kokkos = re.compile("(.+)/kk$")
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kokkos_skip = re.compile("(.+)/kk/(host|device)$")
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omp = re.compile("(.+)/omp$")
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opt = re.compile("(.+)/opt$")
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removed = re.compile("(.*)Deprecated$")
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def register_style(list,style,info):
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if style in list.keys():
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list[style]['gpu'] += info['gpu']
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list[style]['intel'] += info['intel']
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list[style]['kokkos'] += info['kokkos']
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list[style]['omp'] += info['omp']
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list[style]['opt'] += info['opt']
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list[style]['removed'] += info['removed']
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else:
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list[style] = info
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def add_suffix(list,style):
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suffix = ""
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if list[style]['gpu']:
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suffix += 'g'
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if list[style]['intel']:
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suffix += 'i'
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if list[style]['kokkos']:
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suffix += 'k'
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if list[style]['omp']:
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suffix += 'o'
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if list[style]['opt']:
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suffix += 't'
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if suffix:
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return style + ' (' + suffix + ')'
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else:
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return style
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def check_style(file,dir,pattern,list,name,suffix=False,skip=()):
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f = os.path.join(dir, file)
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fp = open(f)
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text = fp.read()
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fp.close()
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matches = re.findall(pattern,text,re.MULTILINE)
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counter = 0
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for c in list.keys():
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# known undocumented aliases we need to skip
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if c in skip: continue
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s = c
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if suffix: s = add_suffix(list,c)
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if not s in matches:
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if not list[c]['removed']:
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print("%s style entry %s" % (name,s),
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"is missing or incomplete in %s" % file)
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counter += 1
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return counter
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print("Parsing style names from C++ tree in: ",src)
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for h in headers:
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if verbose: print("Checking ", h)
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fp = open(h)
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text = fp.read()
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fp.close()
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matches = re.findall("(.+)Style\((.+),(.+)\)",text,re.MULTILINE)
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for m in matches:
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# skip over internal styles w/o explicit documentation
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style = m[1]
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total += 1
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if upper.match(style):
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continue
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# detect, process, and flag suffix styles:
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info = { 'kokkos': 0, 'gpu': 0, 'intel': 0, \
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'omp': 0, 'opt': 0, 'removed': 0 }
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suffix = kokkos_skip.match(style)
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if suffix:
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continue
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suffix = gpu.match(style)
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if suffix:
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style = suffix.groups()[0]
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info['gpu'] = 1
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suffix = intel.match(style)
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if suffix:
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style = suffix.groups()[0]
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info['intel'] = 1
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suffix = kokkos.match(style)
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if suffix:
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style = suffix.groups()[0]
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info['kokkos'] = 1
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suffix = omp.match(style)
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if suffix:
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style = suffix.groups()[0]
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info['omp'] = 1
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suffix = opt.match(style)
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if suffix:
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style = suffix.groups()[0]
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info['opt'] = 1
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deprecated = removed.match(m[2])
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if deprecated:
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info['removed'] = 1
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# register style and suffix flags
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if m[0] == 'Angle':
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register_style(angle,style,info)
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elif m[0] == 'Bond':
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register_style(bond,style,info)
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elif m[0] == 'Dihedral':
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register_style(dihedral,style,info)
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elif m[0] == 'Improper':
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register_style(improper,style,info)
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elif m[0] == 'KSpace':
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register_style(kspace,style,info)
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elif m[0] == 'Pair':
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register_style(pair,style,info)
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counter = 0
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def check_tests(name,list,yaml,search,skip=()):
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num = 0
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yaml_files = glob(os.path.join(tests, yaml))
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styles = []
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missing = []
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for y in yaml_files:
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if verbose: print("Checking: ",y)
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fp = open(y)
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text = fp.read()
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fp.close()
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matches = re.findall(search,text,re.MULTILINE)
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for m in matches:
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styles.append(m)
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for s in list.keys():
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# known undocumented aliases we need to skip
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if s in skip: continue
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if not s in styles:
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if not list[s]['removed']:
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if verbose: print("No test for %s style %s" % (name,s))
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num += 1
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missing.append(s)
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total = len(list)
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print("\nTests for %s styles: %d of %d" % (name,total - num, total))
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print("No tests for: ", missing)
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return num
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counter += check_tests('pair',pair,'*-pair-*.yaml',
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'.*pair_style:\s*(\S+).*',skip=('meam','lj/sf'))
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counter += check_tests('bond',bond,'bond-*.yaml',
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'.*bond_style:\s*(\S+).*')
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counter += check_tests('angle',angle,'angle-*.yaml',
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'.*angle_style:\s*(\S+).*')
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counter += check_tests('dihedral',dihedral,'dihedral-*.yaml',
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'.*dihedral_style:\s*(\S+).*')
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counter += check_tests('improper',improper,'improper-*.yaml',
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'.*improper_style:\s*(\S+).*')
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counter += check_tests('kspace',kspace,'kspace-*.yaml',
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'.*kspace_style\s*(\S+).*')
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total = len(pair)+len(bond)+len(angle)+len(dihedral)+len(improper)+len(kspace)
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print("\nTotal tests missing: %d of %d" % (total - counter, total))
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