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correct formatting and broken/colliding link issues with LATTE package related documentation

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Axel Kohlmeyer
2017-09-26 16:52:10 -04:00
parent 53e4ee4f2d
commit 8bba6d3e8c
4 changed files with 7 additions and 5 deletions
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1
doc/src/Section_packages.txt
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@ -728,6 +728,7 @@ make lib-latte args="-b" # download and build in lib/latte/LATTE-
make lib-latte args="-p $HOME/latte" # use existing LATTE installation in $HOME/latte
make lib-latte args="-b -m gfortran" # download and build in lib/latte and
# copy Makefile.lammps.gfortran to Makefile.lammps
:pre
Note that 3 symbolic (soft) links, "includelink" and "liblink" and
"filelink", are created in lib/latte to point into the LATTE home dir.

6
doc/src/fix_latte.txt
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@ -66,7 +66,7 @@ reference charge of overlapping atom-centered densities and bond
integrals are parameterized using a Slater-Koster tight-binding
approach. This procedure, which usually is referred to as the DFTB
method has been described in detail by ("Elstner"_#Elstner) and
("Finnis"_#Finnis) and coworkers.
("Finnis"_#Finnis2) and coworkers.
The work of the LATTE developers follows that of Elstner closely with
respect to the physical model. However, the development of LATTE is
@ -173,7 +173,7 @@ M. Haugk, T. Frauenheim, S. Suhai, and G. Seifert, Phys. Rev. B, 58,
M. Haugk, T. Frauenheim, S. Suhai, and G. Seifert, Phys. Rev. B, 58,
7260 (1998).
:link(Finnis)
:link(Finnis2)
[(Finnis)] M. W. Finnis, A. T. Paxton, M. Methfessel, and M. van
Schilfgarde, Phys. Rev. Lett., 81, 5149 (1998).
@ -197,7 +197,7 @@ J. Sci. Comput. 36 (2), 147-170, (2014).
[(Niklasson2014)] A. M. N. Niklasson and M. Cawkwell, J. Chem. Phys.,
141, 164123, (2014).
:link(Niklasson2014)
:link(Niklasson2017)
[(Niklasson2017)] A. M. N. Niklasson, J. Chem. Phys., 147, 054103 (2017).
:link(Niklasson2012)

1
doc/src/fixes.txt
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@ -59,6 +59,7 @@ Fixes :h1
fix_langevin
fix_langevin_drude
fix_langevin_eff
fix_latte
fix_lb_fluid
fix_lb_momentum
fix_lb_pc

4
doc/src/pair_eam.txt
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@ -294,7 +294,7 @@ distribution have a ".cdeam" suffix.
Style {eam/fs} computes pairwise interactions for metals and metal
alloys using a generalized form of EAM potentials due to Finnis and
Sinclair "(Finnis)"_#Finnis. The total energy Ei of an atom I is
Sinclair "(Finnis)"_#Finnis1. The total energy Ei of an atom I is
given by
:c,image(Eqs/pair_eam_fs.jpg)
@ -442,7 +442,7 @@ of Physics: Condensed Matter, 16, S2629 (2004).
[(Daw)] Daw, Baskes, Phys Rev Lett, 50, 1285 (1983).
Daw, Baskes, Phys Rev B, 29, 6443 (1984).
:link(Finnis)
:link(Finnis1)
[(Finnis)] Finnis, Sinclair, Philosophical Magazine A, 50, 45 (1984).
:link(Stukowski)