rename USER-LB to LATBOLTZ

This commit is contained in:
Axel Kohlmeyer
2021-06-29 17:07:14 -04:00
parent dc3efd17d2
commit 8bf6805e1d
54 changed files with 26 additions and 26 deletions

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@ -143,7 +143,7 @@ set(STANDARD_PACKAGES ASPHERE BODY CLASS2 COLLOID COMPRESS DIPOLE
PLUGIN QEQ REPLICA RIGID SHOCK SPIN ML-SNAP SRD KIM PYTHON MSCG MPIIO VORONOI PLUGIN QEQ REPLICA RIGID SHOCK SPIN ML-SNAP SRD KIM PYTHON MSCG MPIIO VORONOI
USER-ADIOS USER-ATC USER-AWPMD USER-BOCS CG-DNA USER-MESODPD CG-SDK USER-ADIOS USER-ATC USER-AWPMD USER-BOCS CG-DNA USER-MESODPD CG-SDK
USER-COLVARS USER-DIELECTRIC USER-DIFFRACTION USER-DPD USER-DRUDE USER-EFF USER-FEP USER-COLVARS USER-DIELECTRIC USER-DIFFRACTION USER-DPD USER-DRUDE USER-EFF USER-FEP
USER-H5MD ML-HDNNP USER-LB USER-MANIFOLD USER-MDI MEAM USER-MESONT USER-MGPT USER-H5MD ML-HDNNP LATBOLTZ USER-MANIFOLD USER-MDI MEAM USER-MESONT USER-MGPT
USER-MISC USER-MOFFF USER-MOLFILE USER-NETCDF USER-PHONON USER-PLUMED USER-PTM USER-QTB USER-MISC USER-MOFFF USER-MOLFILE USER-NETCDF USER-PHONON USER-PLUMED USER-PTM USER-QTB
ML-RANN USER-REACTION USER-REAXC USER-SCAFACOS USER-SDPD USER-SMD USER-SMTBQ USER-SPH ML-RANN USER-REACTION USER-REAXC USER-SCAFACOS USER-SDPD USER-SMD USER-SMTBQ USER-SPH
USER-TALLY USER-UEF USER-VTK ML-QUIP USER-QMMM USER-YAFF ML-PACE USER-BROWNIAN) USER-TALLY USER-UEF USER-VTK ML-QUIP USER-QMMM USER-YAFF ML-PACE USER-BROWNIAN)
@ -232,7 +232,7 @@ endif()
pkg_depends(ML-IAP ML-SNAP) pkg_depends(ML-IAP ML-SNAP)
pkg_depends(MPIIO MPI) pkg_depends(MPIIO MPI)
pkg_depends(USER-ATC MANYBODY) pkg_depends(USER-ATC MANYBODY)
pkg_depends(USER-LB MPI) pkg_depends(LATBOLTZ MPI)
pkg_depends(USER-PHONON KSPACE) pkg_depends(USER-PHONON KSPACE)
pkg_depends(USER-SCAFACOS MPI) pkg_depends(USER-SCAFACOS MPI)
pkg_depends(USER-DIELECTRIC KSPACE) pkg_depends(USER-DIELECTRIC KSPACE)

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@ -7,7 +7,7 @@ set(ALL_PACKAGES ASPHERE BODY CLASS2 COLLOID COMPRESS CORESHELL DIPOLE GPU
SRD VORONOI SRD VORONOI
USER-ADIOS USER-ATC USER-AWPMD USER-BROWNIAN USER-BOCS CG-DNA CG-SDK USER-ADIOS USER-ATC USER-AWPMD USER-BROWNIAN USER-BOCS CG-DNA CG-SDK
USER-COLVARS USER-DIFFRACTION USER-DPD USER-DRUDE USER-EFF USER-FEP USER-H5MD USER-COLVARS USER-DIFFRACTION USER-DPD USER-DRUDE USER-EFF USER-FEP USER-H5MD
ML-HDNNP USER-INTEL USER-LB USER-MANIFOLD USER-MDI MEAM USER-MESODPD ML-HDNNP USER-INTEL LATBOLTZ USER-MANIFOLD USER-MDI MEAM USER-MESODPD
USER-MESONT USER-MGPT USER-MISC USER-MOFFF USER-MOLFILE USER-NETCDF USER-OMP USER-MESONT USER-MGPT USER-MISC USER-MOFFF USER-MOLFILE USER-NETCDF USER-OMP
ML-PACE USER-PHONON USER-PLUMED USER-PTM USER-QMMM USER-QTB ML-QUIP ML-RANN ML-PACE USER-PHONON USER-PLUMED USER-PTM USER-QMMM USER-QTB ML-QUIP ML-RANN
USER-REACTION USER-REAXC USER-SCAFACOS USER-SDPD USER-SMD USER-SMTBQ USER-SPH USER-REACTION USER-REAXC USER-SCAFACOS USER-SDPD USER-SMD USER-SMTBQ USER-SPH

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@ -9,7 +9,7 @@ set(ALL_PACKAGES ASPHERE BODY CLASS2 COLLOID COMPRESS CORESHELL DIPOLE GPU
SRD VORONOI SRD VORONOI
USER-ADIOS USER-ATC USER-AWPMD USER-BROWNIAN USER-BOCS CG-DNA CG-SDK USER-ADIOS USER-ATC USER-AWPMD USER-BROWNIAN USER-BOCS CG-DNA CG-SDK
USER-COLVARS USER-DIFFRACTION USER-DPD USER-DRUDE USER-EFF USER-FEP USER-H5MD USER-COLVARS USER-DIFFRACTION USER-DPD USER-DRUDE USER-EFF USER-FEP USER-H5MD
ML-HDNNP USER-INTEL USER-LB USER-MANIFOLD USER-MDI MEAM USER-MESODPD ML-HDNNP USER-INTEL LATBOLTZ USER-MANIFOLD USER-MDI MEAM USER-MESODPD
USER-MESONT USER-MGPT USER-MISC USER-MOFFF USER-MOLFILE USER-NETCDF USER-OMP USER-MESONT USER-MGPT USER-MISC USER-MOFFF USER-MOLFILE USER-NETCDF USER-OMP
ML-PACE USER-PHONON USER-PLUMED USER-PTM USER-QMMM USER-QTB ML-QUIP ML-RANN ML-PACE USER-PHONON USER-PLUMED USER-PTM USER-QMMM USER-QTB ML-QUIP ML-RANN
USER-REACTION USER-REAXC USER-SCAFACOS USER-SDPD USER-SMD USER-SMTBQ USER-SPH USER-REACTION USER-REAXC USER-SCAFACOS USER-SDPD USER-SMD USER-SMTBQ USER-SPH

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@ -16,7 +16,7 @@ endforeach()
# these two packages require a full MPI implementation # these two packages require a full MPI implementation
if(BUILD_MPI) if(BUILD_MPI)
set(PKG_MPIIO ON CACHE BOOL "" FORCE) set(PKG_MPIIO ON CACHE BOOL "" FORCE)
set(PKG_USER-LB ON CACHE BOOL "" FORCE) set(PKG_LATBOLTZ ON CACHE BOOL "" FORCE)
endif() endif()
set(DOWNLOAD_VORO ON CACHE BOOL "" FORCE) set(DOWNLOAD_VORO ON CACHE BOOL "" FORCE)

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@ -3,7 +3,7 @@
set(PACKAGES_WITH_LIB COMPRESS GPU KIM KOKKOS LATTE MESSAGE MPIIO MSCG set(PACKAGES_WITH_LIB COMPRESS GPU KIM KOKKOS LATTE MESSAGE MPIIO MSCG
PYTHON VORONOI PYTHON VORONOI
USER-ADIOS USER-ATC USER-AWPMD USER-H5MD ML-HDNNP USER-LB USER-MOLFILE USER-ADIOS USER-ATC USER-AWPMD USER-H5MD ML-HDNNP LATBOLTZ USER-MOLFILE
USER-MESONT USER-MDI USER-NETCDF ML-PACE USER-PLUMED USER-QMMM ML-QUIP USER-MESONT USER-MDI USER-NETCDF ML-PACE USER-PLUMED USER-QMMM ML-QUIP
USER-SCAFACOS USER-SMD USER-VTK) USER-SCAFACOS USER-SMD USER-VTK)

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@ -90,7 +90,7 @@ standard. A more detailed discussion of that is below.
directory, or ``make`` from the ``src/STUBS`` dir. If the build directory, or ``make`` from the ``src/STUBS`` dir. If the build
fails, you may need to edit the ``STUBS/Makefile`` for your fails, you may need to edit the ``STUBS/Makefile`` for your
platform. The stubs library does not provide MPI/IO functions platform. The stubs library does not provide MPI/IO functions
required by some LAMMPS packages, e.g. ``MPIIO`` or ``USER-LB``, required by some LAMMPS packages, e.g. ``MPIIO`` or ``LATBOLTZ``,
and thus is not compatible with those packages. and thus is not compatible with those packages.
.. note:: .. note::

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@ -20,7 +20,7 @@ The LAMMPS binaries contain *all* :doc:`optional packages <Packages>`
included in the source distribution except: KIM, KOKKOS, MSCG, PYTHON, included in the source distribution except: KIM, KOKKOS, MSCG, PYTHON,
USER-ADIOS, USER-H5MD, USER-NETCDF, USER-QMMM, ML-QUIP, and USER-VTK. USER-ADIOS, USER-H5MD, USER-NETCDF, USER-QMMM, ML-QUIP, and USER-VTK.
The serial version also does not include the MPIIO and The serial version also does not include the MPIIO and
USER-LB packages. The GPU package is compiled for OpenCL with LATBOLTZ packages. The GPU package is compiled for OpenCL with
mixed precision kernels. mixed precision kernels.
The LAMMPS library is compiled as a shared library and the The LAMMPS library is compiled as a shared library and the

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@ -31,7 +31,7 @@ general-purpose as it is without their expertise and efforts.
* Metin Aktulga (MSU), USER-REAXC package for C version of ReaxFF * Metin Aktulga (MSU), USER-REAXC package for C version of ReaxFF
* Mike Brown (Intel), GPU and USER-INTEL packages * Mike Brown (Intel), GPU and USER-INTEL packages
* Colin Denniston (U Western Ontario), USER-LB package * Colin Denniston (U Western Ontario), LATBOLTZ package
* Georg Ganzenmuller (EMI), USER-SMD and USER-SPH packages * Georg Ganzenmuller (EMI), USER-SMD and USER-SPH packages
* Andres Jaramillo-Botero (Caltech), USER-EFF package for electron force field * Andres Jaramillo-Botero (Caltech), USER-EFF package for electron force field
* Reese Jones (Sandia) and colleagues, USER-ATC package for atom/continuum coupling * Reese Jones (Sandia) and colleagues, USER-ATC package for atom/continuum coupling

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@ -82,7 +82,7 @@ page gives those details.
* :ref:`USER-H5MD <PKG-USER-H5MD>` * :ref:`USER-H5MD <PKG-USER-H5MD>`
* :ref:`ML-HDNNP <PKG-ML-HDNNP>` * :ref:`ML-HDNNP <PKG-ML-HDNNP>`
* :ref:`USER-INTEL <PKG-USER-INTEL>` * :ref:`USER-INTEL <PKG-USER-INTEL>`
* :ref:`USER-LB <PKG-USER-LB>` * :ref:`LATBOLTZ <PKG-LATBOLTZ>`
* :ref:`USER-MANIFOLD <PKG-USER-MANIFOLD>` * :ref:`USER-MANIFOLD <PKG-USER-MANIFOLD>`
* :ref:`USER-MDI <PKG-USER-MDI>` * :ref:`USER-MDI <PKG-USER-MDI>`
* :ref:`MEAM <PKG-MEAM>` * :ref:`MEAM <PKG-MEAM>`
@ -1676,9 +1676,9 @@ This package has :ref:`specific installation instructions <user-intel>` on the :
---------- ----------
.. _PKG-USER-LB: .. _PKG-LATBOLTZ:
USER-LB package LATBOLTZ package
--------------- ---------------
**Contents:** **Contents:**
@ -1691,12 +1691,12 @@ Ontario).
**Supporting info:** **Supporting info:**
* src/USER-LB: filenames -> commands * src/LATBOLTZ: filenames -> commands
* src/USER-LB/README * src/LATBOLTZ/README
* :doc:`fix lb/fluid <fix_lb_fluid>` * :doc:`fix lb/fluid <fix_lb_fluid>`
* :doc:`fix lb/momentum <fix_lb_momentum>` * :doc:`fix lb/momentum <fix_lb_momentum>`
* :doc:`fix lb/viscous <fix_lb_viscous>` * :doc:`fix lb/viscous <fix_lb_viscous>`
* examples/PACKAGES/lb * examples/PACKAGES/latboltz
---------- ----------

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@ -65,7 +65,7 @@ package:
+------------------------------------------------+-----------------------------------------------------------------+-------------------------------------------------------------------------------+------------------------------------------------------+---------+ +------------------------------------------------+-----------------------------------------------------------------+-------------------------------------------------------------------------------+------------------------------------------------------+---------+
| :ref:`USER-INTEL <PKG-USER-INTEL>` | optimized Intel CPU and KNL styles | :doc:`Speed intel <Speed_intel>` | `Benchmarks <https://www.lammps.org/bench.html>`_ | no | | :ref:`USER-INTEL <PKG-USER-INTEL>` | optimized Intel CPU and KNL styles | :doc:`Speed intel <Speed_intel>` | `Benchmarks <https://www.lammps.org/bench.html>`_ | no |
+------------------------------------------------+-----------------------------------------------------------------+-------------------------------------------------------------------------------+------------------------------------------------------+---------+ +------------------------------------------------+-----------------------------------------------------------------+-------------------------------------------------------------------------------+------------------------------------------------------+---------+
| :ref:`USER-LB <PKG-USER-LB>` | Lattice Boltzmann fluid | :doc:`fix lb/fluid <fix_lb_fluid>` | USER/lb | no | | :ref:`LATBOLTZ <PKG-LATBOLTZ>` | Lattice Boltzmann fluid | :doc:`fix lb/fluid <fix_lb_fluid>` | USER/lb | no |
+------------------------------------------------+-----------------------------------------------------------------+-------------------------------------------------------------------------------+------------------------------------------------------+---------+ +------------------------------------------------+-----------------------------------------------------------------+-------------------------------------------------------------------------------+------------------------------------------------------+---------+
| :ref:`USER-MANIFOLD <PKG-USER-MANIFOLD>` | motion on 2d surfaces | :doc:`fix manifoldforce <fix_manifoldforce>` | USER/manifold | no | | :ref:`USER-MANIFOLD <PKG-USER-MANIFOLD>` | motion on 2d surfaces | :doc:`fix manifoldforce <fix_manifoldforce>` | USER/manifold | no |
+------------------------------------------------+-----------------------------------------------------------------+-------------------------------------------------------------------------------+------------------------------------------------------+---------+ +------------------------------------------------+-----------------------------------------------------------------+-------------------------------------------------------------------------------+------------------------------------------------------+---------+

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@ -341,7 +341,7 @@ of this fix can be used with the *start/stop* keywords of the
Restrictions Restrictions
"""""""""""" """"""""""""
This fix is part of the USER-LB package. It is only enabled if LAMMPS This fix is part of the LATBOLTZ package. It is only enabled if LAMMPS
was built with that package. See the :doc:`Build package <Build_package>` doc page for more info. was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
This fix can only be used with an orthogonal simulation domain. This fix can only be used with an orthogonal simulation domain.

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@ -66,7 +66,7 @@ Can only be used if a lattice-Boltzmann fluid has been created via the
:doc:`fix lb/fluid <fix_lb_fluid>` command, and must come after this :doc:`fix lb/fluid <fix_lb_fluid>` command, and must come after this
command. command.
This fix is part of the USER-LB package. It is only enabled if LAMMPS This fix is part of the LATBOLTZ package. It is only enabled if LAMMPS
was built with that package. See the :doc:`Build package <Build_package>` doc page for more info. was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
Related commands Related commands

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@ -41,7 +41,7 @@ the :doc:`run <run>` command. This fix is not invoked during :doc:`energy minim
Restrictions Restrictions
"""""""""""" """"""""""""
This fix is part of the USER-LB package. It is only enabled if LAMMPS This fix is part of the LATBOLTZ package. It is only enabled if LAMMPS
was built with that package. See the :doc:`Build package <Build_package>` doc page for more info. was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
Can only be used if a lattice-Boltzmann fluid has been created via the Can only be used if a lattice-Boltzmann fluid has been created via the

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@ -139,7 +139,7 @@ of the :doc:`run <run>` command. These fixes are not invoked during
Restrictions Restrictions
"""""""""""" """"""""""""
This fix is part of the USER-LB package. It is only enabled if LAMMPS This fix is part of the LATBOLTZ package. It is only enabled if LAMMPS
was built with that package. See the :doc:`Build package was built with that package. See the :doc:`Build package
<Build_package>` doc page for more info. <Build_package>` doc page for more info.

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@ -71,7 +71,7 @@ for details."
Restrictions Restrictions
"""""""""""" """"""""""""
This fix is part of the USER-LB package. It is only enabled if LAMMPS This fix is part of the LATBOLTZ package. It is only enabled if LAMMPS
was built with that package. See the :doc:`Build package <Build_package>` doc page for more info. was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
Can only be used if a lattice-Boltzmann fluid has been created via the Can only be used if a lattice-Boltzmann fluid has been created via the

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@ -16,7 +16,7 @@ brief descriptions of other fixes below, each of which have their own
doc page. doc page.
There are example scripts for using this package in There are example scripts for using this package in
examples/PACKAGES/lb. examples/PACKAGES/latboltz.
IMPORTANT NOTE: This package can only be used if LAMMPS is compiled IMPORTANT NOTE: This package can only be used if LAMMPS is compiled
with MPI (i.e. the serial makefile should not be used to compile the with MPI (i.e. the serial makefile should not be used to compile the

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@ -23,7 +23,7 @@ FixStyle(lb/fluid,FixLbFluid);
#include "fix.h" #include "fix.h"
#if defined(MPI_STUBS) #if defined(MPI_STUBS)
#error "The USER-LB package cannot be compiled in serial with MPI STUBS" #error "The LATBOLTZ package cannot be compiled in serial with MPI STUBS"
#endif #endif
namespace LAMMPS_NS { namespace LAMMPS_NS {

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@ -53,7 +53,7 @@ PACKAGE = asphere body class2 colloid compress coreshell dipole gpu \
PACKUSER = user-adios user-atc user-awpmd user-brownian user-bocs cg-dna \ PACKUSER = user-adios user-atc user-awpmd user-brownian user-bocs cg-dna \
cg-sdk user-colvars user-dielectric user-diffraction user-dpd user-drude \ cg-sdk user-colvars user-dielectric user-diffraction user-dpd user-drude \
user-eff user-fep user-h5md ml-hdnnp user-intel user-lb user-manifold \ user-eff user-fep user-h5md ml-hdnnp user-intel latboltz user-manifold \
user-mdi meam user-mesodpd user-mesont user-mgpt user-misc \ user-mdi meam user-mesodpd user-mesont user-mgpt user-misc \
user-mofff user-molfile user-netcdf user-omp user-phonon \ user-mofff user-molfile user-netcdf user-omp user-phonon \
ml-pace user-plumed user-ptm user-qmmm user-qtb ml-quip \ ml-pace user-plumed user-ptm user-qmmm user-qtb ml-quip \
@ -61,11 +61,11 @@ PACKUSER = user-adios user-atc user-awpmd user-brownian user-bocs cg-dna \
user-sdpd user-sph user-tally user-uef user-vtk user-yaff user-sdpd user-sph user-tally user-uef user-vtk user-yaff
PACKLIB = compress gpu kim kokkos latte message mpiio mscg poems python voronoi \ PACKLIB = compress gpu kim kokkos latte message mpiio mscg poems python voronoi \
user-adios user-atc user-awpmd user-colvars user-h5md ml-hdnnp user-lb user-mdi \ user-adios user-atc user-awpmd user-colvars user-h5md ml-hdnnp latboltz user-mdi \
user-mesont user-molfile user-netcdf ml-pace user-plumed user-qmmm ml-quip \ user-mesont user-molfile user-netcdf ml-pace user-plumed user-qmmm ml-quip \
user-scafacos user-smd user-vtk user-scafacos user-smd user-vtk
PACKSYS = compress mpiio python user-lb PACKSYS = compress mpiio python latboltz
PACKINT = gpu kokkos message poems user-atc user-awpmd user-colvars user-mesont \ PACKINT = gpu kokkos message poems user-atc user-awpmd user-colvars user-mesont \
user-mdi user-mdi