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update log files for ellipse and flow examples

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This commit is contained in:
Axel Kohlmeyer
2018-11-28 16:16:19 -05:00
parent 4a8f1a7a08
commit 8e07aaf005
12 changed files with 846 additions and 790 deletions
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35
examples/flow/log.5Oct16.flow.couette.g++.1 → examples/flow/log.27Nov18.flow.couette.g++.1
View File

@ -1,4 +1,5 @@
LAMMPS (5 Oct 2016)
LAMMPS (27 Nov 2018)
using 1 OpenMP thread(s) per MPI task
# 2-d LJ flow simulation
dimension 2
@ -18,6 +19,7 @@ Created orthogonal box = (0 0 -0.321089) to (25.6871 22.2457 0.321089)
1 by 1 by 1 MPI processor grid
create_atoms 1 box
Created 420 atoms
Time spent = 0.000395536 secs
mass 1 1.0
mass 2 1.0
@ -75,7 +77,7 @@ fix 4 all enforce2d
timestep 0.003
thermo 500
thermo_modify temp mobile
WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:474)
WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:488)
#dump 1 all atom 500 dump.flow
@ -87,13 +89,18 @@ WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:474
run 10000
Neighbor list info ...
1 neighbor list requests
update every 1 steps, delay 5 steps, check yes
max neighbors/atom: 2000, page size: 100000
master list distance cutoff = 1.42246
ghost atom cutoff = 1.42246
binsize = 0.71123 -> bins = 37 32 1
Memory usage per processor = 2.47395 Mbytes
binsize = 0.71123, bins = 37 32 1
1 neighbor lists, perpetual/occasional/extra = 1 0 0
(1) pair lj/cut, perpetual
attributes: half, newton on
pair build: half/bin/atomonly/newton
stencil: half/bin/2d/newton
bin: standard
Per MPI rank memory allocation (min/avg/max) = 3.047 | 3.047 | 3.047 Mbytes
Step Temp E_pair E_mol TotEng Press Volume
0 1 0 0 0.71190476 0.52314537 571.54286
500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286
@ -116,20 +123,20 @@ Step Temp E_pair E_mol TotEng Press Volume
9000 1 -0.402333 0 0.30957177 2.4852035 571.54286
9500 0.99889786 -0.46870263 0 0.24241751 2.3763314 571.54286
10000 1 -0.43338695 0 0.27851782 2.405424 571.54286
Loop time of 0.281614 on 1 procs for 10000 steps with 420 atoms
Loop time of 0.293461 on 1 procs for 10000 steps with 420 atoms
Performance: 9204085.735 tau/day, 35509.590 timesteps/s
100.1% CPU use with 1 MPI tasks x no OpenMP threads
Performance: 8832531.296 tau/day, 34076.124 timesteps/s
99.8% CPU use with 1 MPI tasks x 1 OpenMP threads
MPI task timing breakdown:
Section | min time | avg time | max time |%varavg| %total
---------------------------------------------------------------
Pair | 0.12437 | 0.12437 | 0.12437 | 0.0 | 44.16
Neigh | 0.062146 | 0.062146 | 0.062146 | 0.0 | 22.07
Comm | 0.0076008 | 0.0076008 | 0.0076008 | 0.0 | 2.70
Output | 0.00014687 | 0.00014687 | 0.00014687 | 0.0 | 0.05
Modify | 0.067444 | 0.067444 | 0.067444 | 0.0 | 23.95
Other | | 0.01991 | | | 7.07
Pair | 0.11085 | 0.11085 | 0.11085 | 0.0 | 37.77
Neigh | 0.059952 | 0.059952 | 0.059952 | 0.0 | 20.43
Comm | 0.010563 | 0.010563 | 0.010563 | 0.0 | 3.60
Output | 0.00021076 | 0.00021076 | 0.00021076 | 0.0 | 0.07
Modify | 0.089026 | 0.089026 | 0.089026 | 0.0 | 30.34
Other | | 0.02286 | | | 7.79
Nlocal: 420 ave 420 max 420 min
Histogram: 1 0 0 0 0 0 0 0 0 0

35
examples/flow/log.5Oct16.flow.couette.g++.4 → examples/flow/log.27Nov18.flow.couette.g++.4
View File

@ -1,4 +1,5 @@
LAMMPS (5 Oct 2016)
LAMMPS (27 Nov 2018)
using 1 OpenMP thread(s) per MPI task
# 2-d LJ flow simulation
dimension 2
@ -18,6 +19,7 @@ Created orthogonal box = (0 0 -0.321089) to (25.6871 22.2457 0.321089)
2 by 2 by 1 MPI processor grid
create_atoms 1 box
Created 420 atoms
Time spent = 0.00031352 secs
mass 1 1.0
mass 2 1.0
@ -75,7 +77,7 @@ fix 4 all enforce2d
timestep 0.003
thermo 500
thermo_modify temp mobile
WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:474)
WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:488)
#dump 1 all atom 500 dump.flow
@ -87,13 +89,18 @@ WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:474
run 10000
Neighbor list info ...
1 neighbor list requests
update every 1 steps, delay 5 steps, check yes
max neighbors/atom: 2000, page size: 100000
master list distance cutoff = 1.42246
ghost atom cutoff = 1.42246
binsize = 0.71123 -> bins = 37 32 1
Memory usage per processor = 2.47768 Mbytes
binsize = 0.71123, bins = 37 32 1
1 neighbor lists, perpetual/occasional/extra = 1 0 0
(1) pair lj/cut, perpetual
attributes: half, newton on
pair build: half/bin/atomonly/newton
stencil: half/bin/2d/newton
bin: standard
Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes
Step Temp E_pair E_mol TotEng Press Volume
0 1 0 0 0.71190476 0.52314537 571.54286
500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286
@ -116,20 +123,20 @@ Step Temp E_pair E_mol TotEng Press Volume
9000 1 -0.45171969 0 0.26018507 2.5525861 571.54286
9500 1.0322994 -0.40989898 0 0.32499991 2.6021234 571.54286
10000 1 -0.42489516 0 0.28700961 2.619505 571.54286
Loop time of 0.134939 on 4 procs for 10000 steps with 420 atoms
Loop time of 0.172876 on 4 procs for 10000 steps with 420 atoms
Performance: 19208643.416 tau/day, 74107.421 timesteps/s
99.3% CPU use with 4 MPI tasks x no OpenMP threads
Performance: 14993379.796 tau/day, 57844.829 timesteps/s
95.2% CPU use with 4 MPI tasks x 1 OpenMP threads
MPI task timing breakdown:
Section | min time | avg time | max time |%varavg| %total
---------------------------------------------------------------
Pair | 0.024453 | 0.030829 | 0.036954 | 3.5 | 22.85
Neigh | 0.0152 | 0.016832 | 0.018415 | 1.2 | 12.47
Comm | 0.040894 | 0.049385 | 0.058308 | 3.7 | 36.60
Output | 0.00027037 | 0.00029039 | 0.0003438 | 0.2 | 0.22
Modify | 0.017885 | 0.018734 | 0.019774 | 0.6 | 13.88
Other | | 0.01887 | | | 13.98
Pair | 0.024842 | 0.030136 | 0.036735 | 3.1 | 17.43
Neigh | 0.014276 | 0.015892 | 0.017287 | 1.1 | 9.19
Comm | 0.065952 | 0.075937 | 0.084912 | 3.2 | 43.93
Output | 0.00034285 | 0.00042874 | 0.00067973 | 0.0 | 0.25
Modify | 0.024682 | 0.026202 | 0.028216 | 1.0 | 15.16
Other | | 0.02428 | | | 14.05
Nlocal: 105 ave 113 max 97 min
Histogram: 2 0 0 0 0 0 0 0 0 2

35
examples/flow/log.5Oct16.flow.pois.g++.1 → examples/flow/log.27Nov18.flow.pois.g++.1
View File

@ -1,4 +1,5 @@
LAMMPS (5 Oct 2016)
LAMMPS (27 Nov 2018)
using 1 OpenMP thread(s) per MPI task
# 2-d LJ flow simulation
dimension 2
@ -18,6 +19,7 @@ Created orthogonal box = (0 0 -0.321089) to (25.6871 22.2457 0.321089)
1 by 1 by 1 MPI processor grid
create_atoms 1 box
Created 420 atoms
Time spent = 0.000394583 secs
mass 1 1.0
mass 2 1.0
@ -75,7 +77,7 @@ fix 7 all enforce2d
timestep 0.003
thermo 500
thermo_modify temp mobile
WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:474)
WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:488)
#dump 1 all atom 500 dump.flow
@ -87,13 +89,18 @@ WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:474
run 10000
Neighbor list info ...
1 neighbor list requests
update every 1 steps, delay 5 steps, check yes
max neighbors/atom: 2000, page size: 100000
master list distance cutoff = 1.42246
ghost atom cutoff = 1.42246
binsize = 0.71123 -> bins = 37 32 1
Memory usage per processor = 2.47395 Mbytes
binsize = 0.71123, bins = 37 32 1
1 neighbor lists, perpetual/occasional/extra = 1 0 0
(1) pair lj/cut, perpetual
attributes: half, newton on
pair build: half/bin/atomonly/newton
stencil: half/bin/2d/newton
bin: standard
Per MPI rank memory allocation (min/avg/max) = 3.047 | 3.047 | 3.047 Mbytes
Step Temp E_pair E_mol TotEng Press Volume
0 1 0 0 0.71190476 0.52314537 571.54286
500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806
@ -116,20 +123,20 @@ Step Temp E_pair E_mol TotEng Press Volume
9000 1 -0.74461165 0 -0.032706889 2.574656 498.14523
9500 1.2047533 -0.75768848 0 0.09998113 2.4174997 501.8877
10000 1 -0.67361996 0 0.038284798 2.2310948 507.57444
Loop time of 0.313724 on 1 procs for 10000 steps with 420 atoms
Loop time of 0.353337 on 1 procs for 10000 steps with 420 atoms
Performance: 8262038.165 tau/day, 31875.147 timesteps/s
100.1% CPU use with 1 MPI tasks x no OpenMP threads
Performance: 7335771.903 tau/day, 28301.589 timesteps/s
99.6% CPU use with 1 MPI tasks x 1 OpenMP threads
MPI task timing breakdown:
Section | min time | avg time | max time |%varavg| %total
---------------------------------------------------------------
Pair | 0.13662 | 0.13662 | 0.13662 | 0.0 | 43.55
Neigh | 0.034956 | 0.034956 | 0.034956 | 0.0 | 11.14
Comm | 0.0064242 | 0.0064242 | 0.0064242 | 0.0 | 2.05
Output | 0.00014639 | 0.00014639 | 0.00014639 | 0.0 | 0.05
Modify | 0.11616 | 0.11616 | 0.11616 | 0.0 | 37.03
Other | | 0.01941 | | | 6.19
Pair | 0.12053 | 0.12053 | 0.12053 | 0.0 | 34.11
Neigh | 0.033673 | 0.033673 | 0.033673 | 0.0 | 9.53
Comm | 0.00895 | 0.00895 | 0.00895 | 0.0 | 2.53
Output | 0.00023317 | 0.00023317 | 0.00023317 | 0.0 | 0.07
Modify | 0.16577 | 0.16577 | 0.16577 | 0.0 | 46.92
Other | | 0.02418 | | | 6.84
Nlocal: 420 ave 420 max 420 min
Histogram: 1 0 0 0 0 0 0 0 0 0

35
examples/flow/log.5Oct16.flow.pois.g++.4 → examples/flow/log.27Nov18.flow.pois.g++.4
View File

@ -1,4 +1,5 @@
LAMMPS (5 Oct 2016)
LAMMPS (27 Nov 2018)
using 1 OpenMP thread(s) per MPI task
# 2-d LJ flow simulation
dimension 2
@ -18,6 +19,7 @@ Created orthogonal box = (0 0 -0.321089) to (25.6871 22.2457 0.321089)
2 by 2 by 1 MPI processor grid
create_atoms 1 box
Created 420 atoms
Time spent = 0.00031805 secs
mass 1 1.0
mass 2 1.0
@ -75,7 +77,7 @@ fix 7 all enforce2d
timestep 0.003
thermo 500
thermo_modify temp mobile
WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:474)
WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:488)
#dump 1 all atom 500 dump.flow
@ -87,13 +89,18 @@ WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:474
run 10000
Neighbor list info ...
1 neighbor list requests
update every 1 steps, delay 5 steps, check yes
max neighbors/atom: 2000, page size: 100000
master list distance cutoff = 1.42246
ghost atom cutoff = 1.42246
binsize = 0.71123 -> bins = 37 32 1
Memory usage per processor = 2.47768 Mbytes
binsize = 0.71123, bins = 37 32 1
1 neighbor lists, perpetual/occasional/extra = 1 0 0
(1) pair lj/cut, perpetual
attributes: half, newton on
pair build: half/bin/atomonly/newton
stencil: half/bin/2d/newton
bin: standard
Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes
Step Temp E_pair E_mol TotEng Press Volume
0 1 0 0 0.71190476 0.52314537 571.54286
500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659
@ -116,20 +123,20 @@ Step Temp E_pair E_mol TotEng Press Volume
9000 1 -0.8200207 0 -0.10811593 2.6210027 502.60511
9500 1.2167146 -0.77385956 0 0.092325373 2.5938179 500.86068
10000 1 -0.73082779 0 -0.018923029 2.735112 505.69856
Loop time of 0.225282 on 4 procs for 10000 steps with 420 atoms
Loop time of 0.208663 on 4 procs for 10000 steps with 420 atoms
Performance: 11505578.988 tau/day, 44388.808 timesteps/s
99.2% CPU use with 4 MPI tasks x no OpenMP threads
Performance: 12421919.467 tau/day, 47924.072 timesteps/s
95.5% CPU use with 4 MPI tasks x 1 OpenMP threads
MPI task timing breakdown:
Section | min time | avg time | max time |%varavg| %total
---------------------------------------------------------------
Pair | 0.032012 | 0.033154 | 0.035252 | 0.7 | 14.72
Neigh | 0.0094411 | 0.0097138 | 0.010069 | 0.2 | 4.31
Comm | 0.080785 | 0.085431 | 0.088782 | 1.0 | 37.92
Output | 0.0003736 | 0.00039834 | 0.00046349 | 0.2 | 0.18
Modify | 0.062812 | 0.064686 | 0.066481 | 0.6 | 28.71
Other | | 0.0319 | | | 14.16
Pair | 0.031368 | 0.032216 | 0.033688 | 0.5 | 15.44
Neigh | 0.0093348 | 0.0097306 | 0.010144 | 0.3 | 4.66
Comm | 0.059824 | 0.065823 | 0.07057 | 1.8 | 31.55
Output | 0.00033283 | 0.00043827 | 0.00073981 | 0.0 | 0.21
Modify | 0.067317 | 0.071492 | 0.075636 | 1.3 | 34.26
Other | | 0.02896 | | | 13.88
Nlocal: 105 ave 106 max 103 min
Histogram: 1 0 0 0 0 0 1 0 0 2