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rename USER-DPD to DPD-REACT

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This commit is contained in:
Axel Kohlmeyer
2021-06-29 19:41:23 -04:00
parent 6ceedb62be
commit 8e185a1a12
75 changed files with 41 additions and 41 deletions
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2
doc/src/Build_basics.rst
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@ -130,7 +130,7 @@ package can be compiled to include OpenMP threading.
In addition, there are a few commands in LAMMPS that have native OpenMP
support included as well. These are commands in the ``MPIIO``,
``ML-SNAP``, ``USER-DIFFRACTION``, and ``USER-DPD`` packages. In addition
``ML-SNAP``, ``USER-DIFFRACTION``, and ``DPD-REACT`` packages. In addition
some packages support OpenMP threading indirectly through the libraries
they interface to: e.g. ``LATTE``, ``KSPACE``, and ``USER-COLVARS``.
See the :doc:`Packages details <Packages_details>` page for more

10
doc/src/Packages_details.rst
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@ -75,7 +75,7 @@ page gives those details.
* :ref:`USER-COLVARS <PKG-USER-COLVARS>`
* :ref:`USER-DIELECTRIC <PKG-USER-DIELECTRIC>`
* :ref:`USER-DIFFRACTION <PKG-USER-DIFFRACTION>`
* :ref:`USER-DPD <PKG-USER-DPD>`
* :ref:`DPD-REACT <PKG-DPD-REACT>`
* :ref:`USER-DRUDE <PKG-USER-DRUDE>`
* :ref:`USER-EFF <PKG-USER-EFF>`
* :ref:`USER-FEP <PKG-USER-FEP>`
@ -1424,9 +1424,9 @@ intensities based on kinematic diffraction theory.
----------
.. _PKG-USER-DPD:
.. _PKG-DPD-REACT:
USER-DPD package
DPD-REACT package
----------------
**Contents:**
@ -1446,8 +1446,8 @@ Brennan (ARL).
**Supporting info:**
* src/USER-DPD: filenames -> commands
* /src/USER-DPD/README
* src/DPD-REACT: filenames -> commands
* /src/DPD-REACT/README
* :doc:`compute dpd <compute_dpd>`
* :doc:`compute dpd/atom <compute_dpd_atom>`
* :doc:`fix eos/cv <fix_eos_table>`

2
doc/src/Packages_user.rst
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@ -51,7 +51,7 @@ package:
+------------------------------------------------+-----------------------------------------------------------------+-------------------------------------------------------------------------------+------------------------------------------------------+---------+
| :ref:`USER-DIFFRACTION <PKG-USER-DIFFRACTION>` | virtual x-ray and electron diffraction | :doc:`compute xrd <compute_xrd>` | USER/diffraction | no |
+------------------------------------------------+-----------------------------------------------------------------+-------------------------------------------------------------------------------+------------------------------------------------------+---------+
| :ref:`USER-DPD <PKG-USER-DPD>` | reactive dissipative particle dynamics | src/USER-DPD/README | USER/dpd | no |
| :ref:`DPD-REACT <PKG-DPD-REACT>` | reactive dissipative particle dynamics | src/DPD-REACT/README | USER/dpd | no |
+------------------------------------------------+-----------------------------------------------------------------+-------------------------------------------------------------------------------+------------------------------------------------------+---------+
| :ref:`USER-DRUDE <PKG-USER-DRUDE>` | Drude oscillators | :doc:`Howto drude <Howto_drude>` | USER/drude | no |
+------------------------------------------------+-----------------------------------------------------------------+-------------------------------------------------------------------------------+------------------------------------------------------+---------+

4
doc/src/atom_style.rst
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@ -194,7 +194,7 @@ For the *peri* style, the particles are spherical and each stores a
per-particle mass and volume.
The *dpd* style is for dissipative particle dynamics (DPD) particles.
Note that it is part of the USER-DPD package, and is not for use with
Note that it is part of the DPD-REACT package, and is not for use with
the :doc:`pair_style dpd or dpd/stat <pair_dpd>` commands, which can
simply use atom_style atomic. Atom_style dpd extends DPD particle
properties with internal temperature (dpdTheta), internal conductive
@ -354,7 +354,7 @@ The *peri* style is part of the PERI package for Peridynamics.
The *electron* style is part of the USER-EFF package for :doc:`electronic force fields <pair_eff>`.
The *dpd* style is part of the USER-DPD package for dissipative
The *dpd* style is part of the DPD-REACT package for dissipative
particle dynamics (DPD).
The *edpd*\ , *mdpd*\ , and *tdpd* styles are part of the USER-MESODPD package

2
doc/src/compute_dpd.rst
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@ -60,7 +60,7 @@ The vector values will be in energy and temperature :doc:`units <units>`.
Restrictions
""""""""""""
This command is part of the USER-DPD package. It is only enabled if
This command is part of the DPD-REACT package. It is only enabled if
LAMMPS was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
This command also requires use of the :doc:`atom_style dpd <atom_style>`

2
doc/src/compute_dpd_atom.rst
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@ -50,7 +50,7 @@ and temperature (:math:`theta`) :doc:`units <units>`.
Restrictions
""""""""""""
This command is part of the USER-DPD package. It is only enabled if
This command is part of the DPD-REACT package. It is only enabled if
LAMMPS was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
This command also requires use of the :doc:`atom_style dpd <atom_style>`

2
doc/src/fix_dpd_energy.rst
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@ -56,7 +56,7 @@ examples/PACKAGES/dpd directory.
Restrictions
""""""""""""
This command is part of the USER-DPD package. It is only enabled if
This command is part of the DPD-REACT package. It is only enabled if
LAMMPS was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
This fix must be used with an additional fix that specifies time

2
doc/src/fix_eos_cv.rst
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@ -43,7 +43,7 @@ equation of state are possible.
Restrictions
""""""""""""
This command is part of the USER-DPD package. It is only enabled if
This command is part of the DPD-REACT package. It is only enabled if
LAMMPS was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
This command also requires use of the :doc:`atom_style dpd <atom_style>`

2
doc/src/fix_eos_table.rst
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@ -102,7 +102,7 @@ one that matches the specified keyword.
Restrictions
""""""""""""
This command is part of the USER-DPD package. It is only enabled if
This command is part of the DPD-REACT package. It is only enabled if
LAMMPS was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
This command also requires use of the :doc:`atom_style dpd <atom_style>`

2
doc/src/fix_eos_table_rx.rst
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@ -177,7 +177,7 @@ coefficient. In this case, the format of the file is as follows:
Restrictions
""""""""""""
This command is part of the USER-DPD package. It is only enabled if
This command is part of the DPD-REACT package. It is only enabled if
LAMMPS was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
This command also requires use of the :doc:`atom_style dpd <atom_style>`

2
doc/src/fix_rx.rst
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@ -206,7 +206,7 @@ read_data data.dpd fix foo_SPECIES NULL Species
Restrictions
""""""""""""
This command is part of the USER-DPD package. It is only enabled if
This command is part of the DPD-REACT package. It is only enabled if
LAMMPS was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
This command also requires use of the :doc:`atom_style dpd <atom_style>`

2
doc/src/fix_shardlow.rst
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@ -60,7 +60,7 @@ examples/PACKAGES/dpd directory.
Restrictions
""""""""""""
This command is part of the USER-DPD package. It is only enabled if
This command is part of the DPD-REACT package. It is only enabled if
LAMMPS was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
This fix is currently limited to orthogonal simulation cell

2
doc/src/pair_dpd_fdt.rst
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@ -162,7 +162,7 @@ significantly larger timesteps to be taken.
Restrictions
""""""""""""
These commands are part of the USER-DPD package. They are only
These commands are part of the DPD-REACT package. They are only
enabled if LAMMPS was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
Pair styles *dpd/fdt* and *dpd/fdt/energy* require use of the

2
doc/src/pair_exp6_rx.rst
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@ -178,7 +178,7 @@ pair interaction.
Restrictions
""""""""""""
This command is part of the USER-DPD package. It is only enabled if
This command is part of the DPD-REACT package. It is only enabled if
LAMMPS was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
Related commands

2
doc/src/pair_multi_lucy.rst
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@ -193,7 +193,7 @@ This pair style can only be used via the *pair* keyword of the
Restrictions
""""""""""""
This command is part of the USER-DPD package. It is only enabled if
This command is part of the DPD-REACT package. It is only enabled if
LAMMPS was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
Related commands

2
doc/src/pair_multi_lucy_rx.rst
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@ -225,7 +225,7 @@ This pair style can only be used via the *pair* keyword of the
Restrictions
""""""""""""
This command is part of the USER-DPD package. It is only enabled if
This command is part of the DPD-REACT package. It is only enabled if
LAMMPS was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
Related commands

2
doc/src/pair_table_rx.rst
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@ -232,7 +232,7 @@ This pair style can only be used via the *pair* keyword of the
Restrictions
""""""""""""
This command is part of the USER-DPD package. It is only enabled if
This command is part of the DPD-REACT package. It is only enabled if
LAMMPS was built with that package. See the :doc:`Build package <Build_package>` doc page for more info.
Related commands

2
doc/src/set.rst
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@ -459,7 +459,7 @@ long range, nonlocal interactions, is set using the *diameter*
keyword.
Keyword *dpd/theta* sets the internal temperature of a DPD particle as
defined by the USER-DPD package. If the specified value is a number
defined by the DPD-REACT package. If the specified value is a number
it must be >= 0.0. If the specified value is NULL, then the kinetic
temperature Tkin of each particle is computed as 3/2 k Tkin = KE = 1/2
m v\^2 = 1/2 m (vx\*vx+vy\*vy+vz\*vz). Each particle's internal