git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@3561 f3b2605a-c512-4ea7-a41b-209d697bcdaa
This commit is contained in:
103
doc/compute_property_local.html
Normal file
103
doc/compute_property_local.html
Normal file
@ -0,0 +1,103 @@
|
||||
<HTML>
|
||||
<CENTER><A HREF = "http://lammps.sandia.gov">LAMMPS WWW Site</A> - <A HREF = "Manual.html">LAMMPS Documentation</A> - <A HREF = "Section_commands.html#comm">LAMMPS Commands</A>
|
||||
</CENTER>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<HR>
|
||||
|
||||
<H3>compute property/local command
|
||||
</H3>
|
||||
<P><B>Syntax:</B>
|
||||
</P>
|
||||
<PRE>compute ID group-ID property/local input1 input2 ...
|
||||
</PRE>
|
||||
<UL><LI>ID, group-ID are documented in <A HREF = "compute.html">compute</A> command
|
||||
|
||||
<LI>property/local = style name of this compute command
|
||||
|
||||
<LI>input = one or more attributes
|
||||
|
||||
<PRE> possible attributes = batom1 batom2 btype
|
||||
aatom1 aatom2 aatom3 atype
|
||||
datom1 datom2 datom3 dtype
|
||||
iatom1 iatom2 iatom3 itype
|
||||
</PRE>
|
||||
<PRE> batom1, batom2 = IDs of 2 atoms in each bond
|
||||
btype = bond type of each bond
|
||||
aatom1, aatom2, aatom3 = IDs of 3 atoms in each angle
|
||||
atype = angle type of each angle
|
||||
datom1, datom2, datom3, datom4 = IDs of 4 atoms in each dihedral
|
||||
dtype = dihedral type of each dihedral
|
||||
iatom1, iatom2, iatom3, iatom4 = IDs of 4 atoms in each improper
|
||||
itype = improper type of each improper
|
||||
</PRE>
|
||||
|
||||
</UL>
|
||||
<P><B>Examples:</B>
|
||||
</P>
|
||||
<PRE>compute 1 all property/local btype batom1 batom2
|
||||
compute 1 all property/local atype aatom2
|
||||
</PRE>
|
||||
<P><B>Description:</B>
|
||||
</P>
|
||||
<P>Define a computation that simply stores the specified attributes as
|
||||
local vectors or as columns of a local array. See the
|
||||
<A HREF = "compute.html">compute</A> command for a discussion of what local
|
||||
quantities mean, and how they differ from per-atom quantities. Thus
|
||||
if the input attributes are for bond information, the local vector or
|
||||
array that is generated, when aggregated across all processors, will
|
||||
contain information about all bonds in the system.
|
||||
</P>
|
||||
<P>If multiple input attributes are specified then they must all generate
|
||||
the same amount of information, so that the resulting local array has
|
||||
the same number of rows for each column. This means that only bond
|
||||
attributes can be specified together, or angle attributes, etc. Bond
|
||||
and angle attributes can not be mixed in the same compute
|
||||
property/local command.
|
||||
</P>
|
||||
<P>The local data is generated by looping over all the atoms owned on a
|
||||
processor and extracting bond, angle, etc info. For bonds, info about
|
||||
an individual bond will only be included if both atoms in the bond are
|
||||
in the specified compute group. Likewise for angles, dihedrals, etc.
|
||||
</P>
|
||||
<P>Note that as atoms migrate from processor to processor, there will be
|
||||
no consistent ordering of the entries within the local vector or array
|
||||
from one timestep to the next. The only consistency that is
|
||||
guaranteed is that the ordering on a particular timestep will be the
|
||||
same for local info generated by other compute commands. For example,
|
||||
output from the <A HREF = "compute_bond_local.html">compute bond/local</A> command
|
||||
can be combined with bond atom indices from this command and output by
|
||||
the <A HREF = "dump.html">dump local</A> command in a consistent way.
|
||||
</P>
|
||||
<P>The <I>batom1</I> and <I>batom2</I> attributes refer the atom IDs of the 2 atoms
|
||||
in each <A HREF = "bond_style.html">bond</A>. The <I>btype</I> attribute refers to the
|
||||
type of the bond, from 1 to Nbtypes = # of bond types. The number of
|
||||
bond types is defined in the data file read by the
|
||||
<A HREF = "read_data.html">read_data</A> command. The attributes that start with
|
||||
"a", "d", "i", refer to similar values for <A HREF = "angle_style.html">angles</A>,
|
||||
<A HREF = "dihedral_style.html">dihedrals</A>, and <A HREF = "improper_style.html">impropers</A>.
|
||||
</P>
|
||||
<P><B>Output info:</B>
|
||||
</P>
|
||||
<P>This compute calculates a local vector or local array depending on the
|
||||
number of input values. If a single input is specified, a local
|
||||
vector is produced. If two or more inputs are specified, a local
|
||||
array is produced where the number of columns = the number of inputs.
|
||||
The vector or array can be accessed by any command that uses local
|
||||
values from a compute as input. See <A HREF = "Section_howto.html#4_15">this
|
||||
section</A> for an overview of LAMMPS output
|
||||
options.
|
||||
</P>
|
||||
<P><B>Restrictions:</B> none
|
||||
</P>
|
||||
<P><B>Related commands:</B>
|
||||
</P>
|
||||
<P><A HREF = "dump.html">dump local</A>, <A HREF = "compute_reduce.html">compute reduce</A>
|
||||
</P>
|
||||
<P><B>Default:</B> none
|
||||
</P>
|
||||
</HTML>
|
||||
Reference in New Issue
Block a user