fix a bunch more broken links
This commit is contained in:
@ -77,7 +77,7 @@ buffer, and they will be communicated together to minimize
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communication overhead. The communication buffers are defined vectors
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communication overhead. The communication buffers are defined vectors
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containing ``double`` values. To correctly store integers that may be
|
containing ``double`` values. To correctly store integers that may be
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64-bit (bigint, tagint, imageint) in the buffer, you need to use the
|
64-bit (bigint, tagint, imageint) in the buffer, you need to use the
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`ubuf union <Communication buffer coding with *ubuf*>`_ construct.
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:ref:`ubuf union <communication_buffer_coding_with_ubuf>` construct.
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|
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The *Fix*, *Compute*, and *Dump* classes can also invoke the same kind
|
The *Fix*, *Compute*, and *Dump* classes can also invoke the same kind
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of forward and reverse communication operations using the same *Comm*
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of forward and reverse communication operations using the same *Comm*
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@ -643,6 +643,8 @@ Tohoku University (under MIT license)
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|
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---------------------------
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---------------------------
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|
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.. _communication_buffer_coding_with_ubuf:
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|
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Communication buffer coding with *ubuf*
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Communication buffer coding with *ubuf*
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---------------------------------------
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---------------------------------------
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|
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@ -11,12 +11,14 @@ LAMMPS in workshop settings, we had to redirect Windows users to
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Linux Virtual Machines such as VirtualBox or Unix-like compilation with
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Linux Virtual Machines such as VirtualBox or Unix-like compilation with
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Cygwin.
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Cygwin.
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|
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With the latest updates in Windows 10 (Version 2004, Build 19041 or higher),
|
With the latest updates in Windows 10 (Version 2004, Build 19041 or
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Microsoft has added a new way to work on Linux-based code. The Windows
|
higher), Microsoft has added a new way to work on Linux-based code. The
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Subsystem for Linux (WSL). With WSL Version 2, you now get a Linux Virtual
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`Windows Subsystem for Linux (WSL)
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Machine that transparently integrates into Windows. All you need is to ensure
|
<https://learn.microsoft.com/en-us/windows/wsl/>`_. With WSL Version 2,
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you have the latest Windows updates installed and enable this new feature.
|
you now get a Linux Virtual Machine that transparently integrates into
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Linux VMs are then easily installed using the Microsoft Store.
|
Windows. All you need is to ensure you have the latest Windows updates
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|
installed and enable this new feature. Linux VMs are then easily
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|
installed using the Microsoft Store.
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|
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In this tutorial, I'll show you how to set up and compile LAMMPS for both serial
|
In this tutorial, I'll show you how to set up and compile LAMMPS for both serial
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and MPI usage in WSL2.
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and MPI usage in WSL2.
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@ -228,8 +228,9 @@ conversion of atomic information to continuum fields.
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|
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**Install:**
|
**Install:**
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|
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This package has :ref:`specific installation instructions <atc>` on the :doc:`Build extras <Build_extras>` page.
|
This package has :ref:`specific installation instructions <atc>` on the
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The ATC package requires that also the `MANYBODY <PKG-MANYBODY>`_ package is installed.
|
:doc:`Build extras <Build_extras>` page. The ATC package requires that
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|
also the :ref:`MANYBODY <PKG-MANYBODY>` package is installed.
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|
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**Supporting info:**
|
**Supporting info:**
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|
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@ -391,8 +392,8 @@ rigid-body integrators with improved stability.
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|
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**Install:**
|
**Install:**
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|
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The CG-DNA package requires that also the `MOLECULE <PKG-MOLECULE>`_ and
|
The CG-DNA package requires that also the :ref:`MOLECULE <PKG-MOLECULE>`
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`ASPHERE <PKG-ASPHERE>`_ packages are installed.
|
and :ref:`ASPHERE <PKG-ASPHERE>` packages are installed.
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|
|
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**Supporting info:**
|
**Supporting info:**
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|
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@ -1114,15 +1115,15 @@ INTEL package
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|
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**Contents:**
|
**Contents:**
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|
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Dozens of pair, fix, bond, angle, dihedral, improper, and kspace
|
Dozens of pair, fix, bond, angle, dihedral, improper, and kspace styles
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styles which are optimized for Intel CPUs and KNLs (Knights Landing).
|
which are optimized for Intel CPUs and KNLs (Knights Landing). All of
|
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All of them have an "intel" in their style name. The
|
them have an "intel" in their style name. The :doc:`INTEL package
|
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:doc:`INTEL package <Speed_intel>` page gives details of what hardware and
|
<Speed_intel>` page gives details of what hardware and compilers are
|
||||||
compilers are required on your system, and how to build and use this
|
required on your system, and how to build and use this package. Its
|
||||||
package. Its styles can be invoked at run time via the "-sf intel" or
|
styles can be invoked at run time via the "-sf intel" or "-suffix intel"
|
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"-suffix intel" :doc:`command-line switches <Run_options>`. Also see
|
:doc:`command-line switches <Run_options>`. Also see the :ref:`KOKKOS
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the :ref:`KOKKOS <PKG-KOKKOS>`, :ref:`OPT <PKG-OPT>`, and :ref:`OPENMP <PKG-OPENMP>` packages,
|
<PKG-KOKKOS>`, :ref:`OPT <PKG-OPT>`, and :ref:`OPENMP <PKG-OPENMP>`
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which have styles optimized for CPUs and KNLs.
|
packages, which have styles optimized for CPUs and KNLs.
|
||||||
|
|
||||||
You need to have an Intel compiler, version 14 or higher to take full
|
You need to have an Intel compiler, version 14 or higher to take full
|
||||||
advantage of this package. While compilation with GNU compilers is
|
advantage of this package. While compilation with GNU compilers is
|
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@ -1249,12 +1250,13 @@ Dozens of atom, pair, bond, angle, dihedral, improper, fix, compute
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styles adapted to compile using the Kokkos library which can convert
|
styles adapted to compile using the Kokkos library which can convert
|
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them to OpenMP or CUDA code so that they run efficiently on multicore
|
them to OpenMP or CUDA code so that they run efficiently on multicore
|
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CPUs, KNLs, or GPUs. All the styles have a "kk" as a suffix in their
|
CPUs, KNLs, or GPUs. All the styles have a "kk" as a suffix in their
|
||||||
style name. The :doc:`KOKKOS package <Speed_kokkos>` page gives
|
style name. The :doc:`KOKKOS package <Speed_kokkos>` page gives details
|
||||||
details of what hardware and software is required on your system, and
|
of what hardware and software is required on your system, and how to
|
||||||
how to build and use this package. Its styles can be invoked at run
|
build and use this package. Its styles can be invoked at run time via
|
||||||
time via the "-sf kk" or "-suffix kk" :doc:`command-line switches <Run_options>`. Also see the :ref:`GPU <PKG-GPU>`, :ref:`OPT <PKG-OPT>`,
|
the "-sf kk" or "-suffix kk" :doc:`command-line switches <Run_options>`.
|
||||||
:ref:`INTEL <PKG-INTEL>`, and :ref:`OPENMP <PKG-OPENMP>` packages, which
|
Also see the :ref:`GPU <PKG-GPU>`, :ref:`OPT <PKG-OPT>`, :ref:`INTEL
|
||||||
have styles optimized for CPUs, KNLs, and GPUs.
|
<PKG-INTEL>`, and :ref:`OPENMP <PKG-OPENMP>` packages, which have styles
|
||||||
|
optimized for CPUs, KNLs, and GPUs.
|
||||||
|
|
||||||
You must have a C++14 compatible compiler to use this package.
|
You must have a C++14 compatible compiler to use this package.
|
||||||
KOKKOS makes extensive use of advanced C++ features, which can
|
KOKKOS makes extensive use of advanced C++ features, which can
|
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@ -2328,7 +2330,7 @@ and third order tensor from finite differences.
|
|||||||
|
|
||||||
**Install:**
|
**Install:**
|
||||||
|
|
||||||
The PHONON package requires that also the `KSPACE <PKG-KSPACE>`_
|
The PHONON package requires that also the :ref:`KSPACE <PKG-KSPACE>`
|
||||||
package is installed.
|
package is installed.
|
||||||
|
|
||||||
|
|
||||||
@ -2929,11 +2931,9 @@ VORONOI package
|
|||||||
**Contents:**
|
**Contents:**
|
||||||
|
|
||||||
A compute command which calculates the Voronoi tesselation of a
|
A compute command which calculates the Voronoi tesselation of a
|
||||||
collection of atoms by wrapping the `Voro++ library <voro-home_>`_. This
|
collection of atoms by wrapping the `Voro++ library
|
||||||
can be used to calculate the local volume or each atoms or its near
|
<https://math.lbl.gov/voro++/>`_. This can be used to calculate the
|
||||||
neighbors.
|
local volume or each atoms or its near neighbors.
|
||||||
|
|
||||||
.. _voro-home: https://math.lbl.gov/voro++
|
|
||||||
|
|
||||||
To use this package you must have the Voro++ library available on your
|
To use this package you must have the Voro++ library available on your
|
||||||
system.
|
system.
|
||||||
|
|||||||
@ -29,7 +29,7 @@ contact radius is used only to prevent particles belonging to
|
|||||||
different physical bodies from penetrating each other. It is used by
|
different physical bodies from penetrating each other. It is used by
|
||||||
the contact pair styles, e.g., smd/hertz and smd/tri_surface.
|
the contact pair styles, e.g., smd/hertz and smd/tri_surface.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
The value of the contact radius will be 0.0 for particles not in the
|
The value of the contact radius will be 0.0 for particles not in the
|
||||||
|
|||||||
@ -26,7 +26,7 @@ Description
|
|||||||
Define a computation that calculates the damage status of SPH particles
|
Define a computation that calculates the damage status of SPH particles
|
||||||
according to the damage model which is defined via the SMD SPH pair styles, e.g., the maximum plastic strain failure criterion.
|
according to the damage model which is defined via the SMD SPH pair styles, e.g., the maximum plastic strain failure criterion.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to use Smooth Mach Dynamics in LAMMPS.
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to use Smooth Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
**Output Info:**
|
**Output Info:**
|
||||||
|
|
||||||
|
|||||||
@ -34,7 +34,7 @@ configuration. This compute is only really useful for debugging the
|
|||||||
hourglass control mechanism which is part of the Total-Lagrangian SPH
|
hourglass control mechanism which is part of the Total-Lagrangian SPH
|
||||||
pair style.
|
pair style.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to use Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to use Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
**Output Info:**
|
**Output Info:**
|
||||||
|
|||||||
@ -26,7 +26,7 @@ Description
|
|||||||
Define a computation which outputs the per-particle enthalpy, i.e.,
|
Define a computation which outputs the per-particle enthalpy, i.e.,
|
||||||
the sum of potential energy and heat.
|
the sum of potential energy and heat.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to use Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to use Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output Info
|
Output Info
|
||||||
|
|||||||
@ -27,7 +27,7 @@ Define a computation that outputs the equivalent plastic strain per
|
|||||||
particle. This command is only meaningful if a material model with
|
particle. This command is only meaningful if a material model with
|
||||||
plasticity is defined.
|
plasticity is defined.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to use Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to use Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
**Output Info:**
|
**Output Info:**
|
||||||
|
|||||||
@ -27,7 +27,7 @@ Define a computation that outputs the time rate of the equivalent
|
|||||||
plastic strain. This command is only meaningful if a material model
|
plastic strain. This command is only meaningful if a material model
|
||||||
with plasticity is defined.
|
with plasticity is defined.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to use Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to use Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
**Output Info:**
|
**Output Info:**
|
||||||
|
|||||||
@ -28,7 +28,7 @@ The mass density is the mass of a particle which is constant during
|
|||||||
the course of a simulation, divided by its volume, which can change
|
the course of a simulation, divided by its volume, which can change
|
||||||
due to mechanical deformation.
|
due to mechanical deformation.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to use Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to use Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output info
|
Output info
|
||||||
|
|||||||
@ -27,7 +27,7 @@ Define a computation that calculates the deformation gradient. It is
|
|||||||
only meaningful for particles which interact according to the
|
only meaningful for particles which interact according to the
|
||||||
Total-Lagrangian SPH pair style.
|
Total-Lagrangian SPH pair style.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to use Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to use Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output info
|
Output info
|
||||||
|
|||||||
@ -32,7 +32,7 @@ time step. This calculation is performed automatically in the
|
|||||||
relevant SPH pair styles and this compute only serves to make the
|
relevant SPH pair styles and this compute only serves to make the
|
||||||
stable time increment accessible for output purposes.
|
stable time increment accessible for output purposes.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output info
|
Output info
|
||||||
|
|||||||
@ -27,7 +27,7 @@ Define a computation that calculates the number of particles inside of
|
|||||||
the smoothing kernel radius for particles interacting via the
|
the smoothing kernel radius for particles interacting via the
|
||||||
Total-Lagrangian SPH pair style.
|
Total-Lagrangian SPH pair style.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output info
|
Output info
|
||||||
|
|||||||
@ -28,7 +28,7 @@ associated with a particle as a rotated ellipsoid. It is only
|
|||||||
meaningful for particles which interact according to the
|
meaningful for particles which interact according to the
|
||||||
Total-Lagrangian SPH pair style.
|
Total-Lagrangian SPH pair style.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to use Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to use Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output info
|
Output info
|
||||||
|
|||||||
@ -26,7 +26,7 @@ Description
|
|||||||
Define a computation that calculates the Green-Lagrange strain tensor
|
Define a computation that calculates the Green-Lagrange strain tensor
|
||||||
for particles interacting via the Total-Lagrangian SPH pair style.
|
for particles interacting via the Total-Lagrangian SPH pair style.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output info
|
Output info
|
||||||
|
|||||||
@ -26,7 +26,7 @@ Description
|
|||||||
Define a computation that calculates the rate of the strain tensor for
|
Define a computation that calculates the rate of the strain tensor for
|
||||||
particles interacting via the Total-Lagrangian SPH pair style.
|
particles interacting via the Total-Lagrangian SPH pair style.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output info
|
Output info
|
||||||
|
|||||||
@ -26,7 +26,7 @@ Description
|
|||||||
Define a computation that outputs the Cauchy stress tensor for
|
Define a computation that outputs the Cauchy stress tensor for
|
||||||
particles interacting via the Total-Lagrangian SPH pair style.
|
particles interacting via the Total-Lagrangian SPH pair style.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output info
|
Output info
|
||||||
|
|||||||
@ -26,7 +26,7 @@ Description
|
|||||||
Define a computation that returns the coordinates of the vertices
|
Define a computation that returns the coordinates of the vertices
|
||||||
corresponding to the triangle-elements of a mesh created by the :doc:`fix smd/wall_surface <fix_smd_wall_surface>`.
|
corresponding to the triangle-elements of a mesh created by the :doc:`fix smd/wall_surface <fix_smd_wall_surface>`.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output info
|
Output info
|
||||||
|
|||||||
@ -26,7 +26,7 @@ Description
|
|||||||
Define a computation that outputs the effective shear modulus for
|
Define a computation that outputs the effective shear modulus for
|
||||||
particles interacting via the updated Lagrangian SPH pair style.
|
particles interacting via the updated Lagrangian SPH pair style.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output info
|
Output info
|
||||||
|
|||||||
@ -27,7 +27,7 @@ Define a computation that returns the number of neighbor particles
|
|||||||
inside of the smoothing kernel radius for particles interacting via
|
inside of the smoothing kernel radius for particles interacting via
|
||||||
the updated Lagrangian SPH pair style.
|
the updated Lagrangian SPH pair style.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output info
|
Output info
|
||||||
|
|||||||
@ -26,7 +26,7 @@ Description
|
|||||||
Define a computation that outputs the logarithmic strain tensor. for
|
Define a computation that outputs the logarithmic strain tensor. for
|
||||||
particles interacting via the updated Lagrangian SPH pair style.
|
particles interacting via the updated Lagrangian SPH pair style.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output info
|
Output info
|
||||||
|
|||||||
@ -27,7 +27,7 @@ Define a computation that outputs the rate of the logarithmic strain
|
|||||||
tensor for particles interacting via the updated Lagrangian SPH pair
|
tensor for particles interacting via the updated Lagrangian SPH pair
|
||||||
style.
|
style.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output info
|
Output info
|
||||||
|
|||||||
@ -25,7 +25,7 @@ Description
|
|||||||
|
|
||||||
Define a computation that outputs the Cauchy stress tensor.
|
Define a computation that outputs the Cauchy stress tensor.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output info
|
Output info
|
||||||
|
|||||||
@ -26,7 +26,7 @@ Description
|
|||||||
Define a computation that provides the per-particle volume and the sum
|
Define a computation that provides the per-particle volume and the sum
|
||||||
of the per-particle volumes of the group for which the fix is defined.
|
of the per-particle volumes of the group for which the fix is defined.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth
|
||||||
Mach Dynamics in LAMMPS.
|
Mach Dynamics in LAMMPS.
|
||||||
|
|
||||||
Output info
|
Output info
|
||||||
|
|||||||
@ -2,7 +2,7 @@ Fix ave/spatial command
|
|||||||
=======================
|
=======================
|
||||||
|
|
||||||
.. meta::
|
.. meta::
|
||||||
:http-equiv=Refresh: 5; url='https://docs.lammps.org/Commands_removed.html#fix-ave-spatial-and-fix-ave-spatial-sphere'
|
:http-equiv=Refresh: 5; url=Commands_removed.html#fix-ave-spatial-and-fix-ave-spatial-sphere
|
||||||
|
|
||||||
.. deprecated:: 11Dec2015
|
.. deprecated:: 11Dec2015
|
||||||
|
|
||||||
|
|||||||
@ -2,7 +2,7 @@ Fix ave/spatial command
|
|||||||
=======================
|
=======================
|
||||||
|
|
||||||
.. meta::
|
.. meta::
|
||||||
:http-equiv=Refresh: 5; url='https://docs.lammps.org/Commands_removed.html#fix-ave-spatial-and-fix-ave-spatial-sphere'
|
:http-equiv=Refresh: 5; url=https://docs.lammps.org/Commands_removed.html#fix-ave-spatial-and-fix-ave-spatial-sphere
|
||||||
|
|
||||||
.. deprecated:: 11Dec2015
|
.. deprecated:: 11Dec2015
|
||||||
|
|
||||||
|
|||||||
@ -43,7 +43,7 @@ This fix inquires the minimum stable time increment across all
|
|||||||
particles contained in the group for which this fix is defined. An
|
particles contained in the group for which this fix is defined. An
|
||||||
additional safety factor *s_fact* is applied to the time increment.
|
additional safety factor *s_fact* is applied to the time increment.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to use Smooth Mach
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to use Smooth Mach
|
||||||
Dynamics in LAMMPS.
|
Dynamics in LAMMPS.
|
||||||
|
|
||||||
Restart, fix_modify, output, run start/stop, minimize info
|
Restart, fix_modify, output, run start/stop, minimize info
|
||||||
|
|||||||
@ -34,7 +34,7 @@ Description
|
|||||||
The fix performs explicit time integration for particles which
|
The fix performs explicit time integration for particles which
|
||||||
interact according with the Total-Lagrangian SPH pair style.
|
interact according with the Total-Lagrangian SPH pair style.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth Mach
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth Mach
|
||||||
Dynamics in LAMMPS.
|
Dynamics in LAMMPS.
|
||||||
|
|
||||||
The *limit_velocity* keyword will control the velocity, scaling the
|
The *limit_velocity* keyword will control the velocity, scaling the
|
||||||
|
|||||||
@ -36,7 +36,7 @@ Description
|
|||||||
The fix performs explicit time integration for particles which
|
The fix performs explicit time integration for particles which
|
||||||
interact with the updated Lagrangian SPH pair style.
|
interact with the updated Lagrangian SPH pair style.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth Mach
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth Mach
|
||||||
Dynamics in LAMMPS.
|
Dynamics in LAMMPS.
|
||||||
|
|
||||||
The *adjust_radius* keyword activates dynamic adjustment of the
|
The *adjust_radius* keyword activates dynamic adjustment of the
|
||||||
|
|||||||
@ -60,7 +60,7 @@ particle to (omega cross Rperp) where omega is its angular velocity
|
|||||||
around the rotation axis and Rperp is a perpendicular vector from the
|
around the rotation axis and Rperp is a perpendicular vector from the
|
||||||
rotation axis to the particle.
|
rotation axis to the particle.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to using Smooth Mach
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to using Smooth Mach
|
||||||
Dynamics in LAMMPS.
|
Dynamics in LAMMPS.
|
||||||
|
|
||||||
Restart, fix_modify, output, run start/stop, minimize info
|
Restart, fix_modify, output, run start/stop, minimize info
|
||||||
|
|||||||
@ -47,7 +47,7 @@ be run for 0 timesteps in order to properly register the new particles
|
|||||||
in the system. See the "funnel_flow" example in the MACHDYN examples
|
in the system. See the "funnel_flow" example in the MACHDYN examples
|
||||||
directory.
|
directory.
|
||||||
|
|
||||||
See `this PDF guide <PDF/SMD_LAMMPS_userguide.pdf>`_ to use Smooth Mach
|
See `this PDF guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ to use Smooth Mach
|
||||||
Dynamics in LAMMPS.
|
Dynamics in LAMMPS.
|
||||||
|
|
||||||
Restart, fix_modify, output, run start/stop, minimize info
|
Restart, fix_modify, output, run start/stop, minimize info
|
||||||
|
|||||||
@ -48,7 +48,7 @@ and a material model to compute shear stresses (the off-diagonal
|
|||||||
components of the stress tensor). Damage and failure models can also
|
components of the stress tensor). Damage and failure models can also
|
||||||
be added.
|
be added.
|
||||||
|
|
||||||
Please see the `SMD user guide <PDF/SMD_LAMMPS_userguide.pdf>`_ for a
|
Please see the `SMD user guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ for a
|
||||||
complete listing of the possible keywords and material models.
|
complete listing of the possible keywords and material models.
|
||||||
|
|
||||||
----------
|
----------
|
||||||
|
|||||||
@ -59,7 +59,7 @@ Note that the use of \*GRADIENT_CORRECTION can lead to severe numerical
|
|||||||
instabilities. For a general fluid simulation, \*NO_GRADIENT_CORRECTION
|
instabilities. For a general fluid simulation, \*NO_GRADIENT_CORRECTION
|
||||||
is recommended.
|
is recommended.
|
||||||
|
|
||||||
Please see the `SMD user guide <PDF/SMD_LAMMPS_userguide.pdf>`_ for a
|
Please see the `SMD user guide <PDF/MACHDYN_LAMMPS_userguide.pdf>`_ for a
|
||||||
complete listing of the possible keywords and material models.
|
complete listing of the possible keywords and material models.
|
||||||
|
|
||||||
----------
|
----------
|
||||||
|
|||||||
@ -5302,7 +5302,7 @@ int lammps_config_has_jpeg_support() {
|
|||||||
\verbatim embed:rst
|
\verbatim embed:rst
|
||||||
The LAMMPS :doc:`dump style movie <dump_image>` supports generating movies
|
The LAMMPS :doc:`dump style movie <dump_image>` supports generating movies
|
||||||
from images on-the-fly via creating a pipe to the
|
from images on-the-fly via creating a pipe to the
|
||||||
`ffmpeg <https://ffmpeg.org/ffmpeg/>`_ program.
|
`ffmpeg <https://ffmpeg.org/>`_ program.
|
||||||
This function checks whether this feature was :ref:`enabled at compile time <graphics>`.
|
This function checks whether this feature was :ref:`enabled at compile time <graphics>`.
|
||||||
It does **not** check whether the ``ffmpeg`` itself is installed and usable.
|
It does **not** check whether the ``ffmpeg`` itself is installed and usable.
|
||||||
\endverbatim
|
\endverbatim
|
||||||
|
|||||||
Reference in New Issue
Block a user