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replace tabs and remove trailing whitespace in lib folder with updated script

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This commit is contained in:
Axel Kohlmeyer
2021-08-22 20:45:24 -04:00
parent 30821b37e5
commit 92b5b159e5
311 changed files with 9176 additions and 9176 deletions
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48
lib/atc/ATC_TransferPartitionOfUnity.cpp
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@ -1,4 +1,4 @@
// ATC headers
// ATC headers
#include "ATC_TransferPartitionOfUnity.h"
#include "ATC_Error.h"
#include "FE_Engine.h"
@ -27,7 +27,7 @@ static double line_xg[line_ngauss], line_wg[line_ngauss];
namespace ATC {
ATC_TransferPartitionOfUnity::ATC_TransferPartitionOfUnity(
string groupName,
string groupName,
double ** & perAtomArray,
LAMMPS_NS::Fix * thisFix,
string matParamFile)
@ -67,7 +67,7 @@ namespace ATC {
//-------------------------------------------------------------------
// kinetic energy portion of stress
/**
* @class KineticTensor
* @brief Class for computing the quantity - m v' (x) v'
@ -83,7 +83,7 @@ namespace ATC {
double mvv2e = lammpsInterface_->mvv2e(); // [MV^2]-->[Energy]
DENS_MAT & v = variationVelocity_;
atomicTensor_.reset(nLocal_,6);
for (int i = 0; i < nLocal_; i++) {
int atomIdx = internalToAtom_(i);
@ -132,7 +132,7 @@ namespace ATC {
ATC::LammpsInterface::instance()->stream_msg_once(".",false,false);
}
// first atom location
int lammps_j = internalToAtom_(j);
int lammps_j = internalToAtom_(j);
xa.copy(xPointer_[lammps_j],3);
for (int k = 0; k < numneigh[lammps_j]; ++k) {
int lammps_k = firstneigh[lammps_j][k];
@ -147,9 +147,9 @@ namespace ATC {
lammpsInterface_->pair_force(lammps_j,lammps_k,rsq,fforce);
fforce *= 0.5; // 1/2 sum_ab = sum_(ab)
if (atomToElementMapType_ == LAGRANGIAN) {
double delX = xref_[lammps_j][0] - xref_[lammps_k][0];
double delY = xref_[lammps_j][1] - xref_[lammps_k][1];
double delZ = xref_[lammps_j][2] - xref_[lammps_k][2];
double delX = xref_[lammps_j][0] - xref_[lammps_k][0];
double delY = xref_[lammps_j][1] - xref_[lammps_k][1];
double delZ = xref_[lammps_j][2] - xref_[lammps_k][2];
virial[0] =-delx*fforce*delX;
virial[1] =-delx*fforce*delY;
virial[2] =-delx*fforce*delZ;
@ -172,7 +172,7 @@ namespace ATC {
for (int i = 0; i < line_ngauss; i++) {
double lambda = line_xg[i];
xlambda = lambda*xab + xb;
lammpsInterface_->periodicity_correction(xlambda.ptr());
feEngine_->shape_functions(xlambda,shp,node_list);
// accumulate to nodes whose support overlaps the integration point
@ -242,7 +242,7 @@ namespace ATC {
DENS_VEC xa(nsd_),xb(nsd_),xab(nsd_),xlambda(nsd_);
for (int j = 0; j < nLocal_; j++) {
// first atom location
int lammps_j = internalToAtom_(j);
int lammps_j = internalToAtom_(j);
xa.copy(xPointer_[lammps_j],3);
for (int k = 0; k < numneigh[lammps_j]; ++k) {
int lammps_k = firstneigh[lammps_j][k];
@ -260,9 +260,9 @@ namespace ATC {
delz*variationVelocity_(j,2));
double flux_vec[3];
if (atomToElementMapType_ == LAGRANGIAN) {
double delX = xref_[lammps_j][0] - xref_[lammps_k][0];
double delY = xref_[lammps_j][1] - xref_[lammps_k][1];
double delZ = xref_[lammps_j][2] - xref_[lammps_k][2];
double delX = xref_[lammps_j][0] - xref_[lammps_k][0];
double delY = xref_[lammps_j][1] - xref_[lammps_k][1];
double delZ = xref_[lammps_j][2] - xref_[lammps_k][2];
flux_vec[0] =fforce*delX;
flux_vec[1] =fforce*delY;
flux_vec[2] =fforce*delZ;
@ -276,7 +276,7 @@ namespace ATC {
for (int i = 0; i < line_ngauss; i++) {
double lambda = line_xg[i];
xlambda = lambda*xab + xb;
lammpsInterface_->periodicity_correction(xlambda.ptr());
feEngine_->shape_functions(xlambda,shp,node_list);
// accumulate to nodes whose support overlaps the integration point
@ -316,7 +316,7 @@ namespace ATC {
field_to_prolongation_name(VELOCITY));
}
// use of prolong assumes atom system contained within mesh
vbar_ = vbar->quantity();
vbar_ = vbar->quantity();
// compute and store variation velocities of atoms
for (int i = 0; i < nLocal_; i++) {
int atomIdx = internalToAtom_(i);
@ -328,10 +328,10 @@ namespace ATC {
}
//-------------------------------------------------------------------
// calculation of the dislocation density tensor
// calculation of the dislocation density tensor
void ATC_TransferPartitionOfUnity::compute_dislocation_density(DENS_MAT & A)
{
A.reset(nNodes_,9);
#ifdef HAS_DXA
double cnaCutoff = lammpsInterface_->near_neighbor_cutoff();
@ -368,7 +368,7 @@ namespace ATC {
DENS_MAT local_A(nNodes_,9);
local_A.zero();
local_A.zero();
Array<bool> latticePeriodicity(3);
latticePeriodicity(0) = (bool) periodicity[0];
latticePeriodicity(1) = (bool) periodicity[1];
@ -406,7 +406,7 @@ namespace ATC {
for (int i = 0; i < line_ngauss; i++) {
double lambda = line_xg[i];
xlambda = lambda*xba + xa;
lammpsInterface_->periodicity_correction(xlambda.ptr());
feEngine_->shape_functions(xlambda,shp,node_list);
// accumulate to nodes whose support overlaps the integration point
@ -472,7 +472,7 @@ namespace ATC {
}
ATC::LammpsInterface::instance()->print_msg_once(ss.str());
ss.str("");
DENS_VEC A_avg(9);
DENS_VEC A_avg(9);
for (int i = 0; i < nNodes_; i++) {
for (int j = 0; j < 9; j++) {
A_avg(j) += A(i,j);
@ -480,9 +480,9 @@ namespace ATC {
}
A_avg /= nNodes_;
ss << "average nodal dislocation density tensor = \n";
ss << A_avg(0) << " " << A_avg(1) << " " << A_avg(2) << "\n";
ss << A_avg(3) << " " << A_avg(4) << " " << A_avg(5) << "\n";
ss << A_avg(6) << " " << A_avg(7) << " " << A_avg(8) << "\n";
ss << A_avg(0) << " " << A_avg(1) << " " << A_avg(2) << "\n";
ss << A_avg(3) << " " << A_avg(4) << " " << A_avg(5) << "\n";
ss << A_avg(6) << " " << A_avg(7) << " " << A_avg(8) << "\n";
ATC::LammpsInterface::instance()->print_msg_once(ss.str());
if (nSeg > 0) {
@ -495,7 +495,7 @@ namespace ATC {
segOutput.write_geometry(&segCoor,&segConn);
OUTPUT_LIST segOut;
segOut["burgers_vector"] = &segBurg;
segOutput.write_data(0,&segOut);
segOutput.write_data(0,&segOut);
}
#else
throw ATC_Error("TransferParititionOfUnity::compute_dislocaton_density - unimplemented function");