git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@473 f3b2605a-c512-4ea7-a41b-209d697bcdaa

doc/Section_commands.html

@@ -317,12 +317,13 @@ descriptions of each style or click on the style itself for a full
 description:
 </P>
 <DIV ALIGN=center><TABLE  WIDTH="0%"  BORDER=1 >
-<TR ALIGN="center"><TD ><A HREF = "fix_addforce.html">addforce</A></TD><TD ><A HREF = "fix_aveforce.html">aveforce</A></TD><TD ><A HREF = "fix_ave_spatial.html">ave/spatial</A></TD><TD ><A HREF = "fix_ave_time.html">ave/time</A></TD><TD ><A HREF = "fix_box_relax.html">box/relax</A></TD><TD ><A HREF = "fix_com.html">com</A></TD><TD ><A HREF = "fix_deposit.html">deposit</A></TD><TD ><A HREF = "fix_drag.html">drag</A></TD></TR>
-<TR ALIGN="center"><TD ><A HREF = "fix_efield.html">efield</A></TD><TD ><A HREF = "fix_enforce2d.html">enforce2d</A></TD><TD ><A HREF = "fix_freeze.html">freeze</A></TD><TD ><A HREF = "fix_gran_diag.html">gran/diag</A></TD><TD ><A HREF = "fix_gravity.html">gravity</A></TD><TD ><A HREF = "fix_gyration.html">gyration</A></TD><TD ><A HREF = "fix_indent.html">indent</A></TD><TD ><A HREF = "fix_langevin.html">langevin</A></TD></TR>
-<TR ALIGN="center"><TD ><A HREF = "fix_lineforce.html">lineforce</A></TD><TD ><A HREF = "fix_msd.html">msd</A></TD><TD ><A HREF = "fix_momentum.html">momentum</A></TD><TD ><A HREF = "fix_nph.html">nph</A></TD><TD ><A HREF = "fix_npt.html">npt</A></TD><TD ><A HREF = "fix_nve.html">nve</A></TD><TD ><A HREF = "fix_nve_gran.html">nve/gran</A></TD><TD ><A HREF = "fix_nve_noforce.html">nve/noforce</A></TD></TR>
-<TR ALIGN="center"><TD ><A HREF = "fix_nvt.html">nvt</A></TD><TD ><A HREF = "fix_orient_fcc.html">orient/fcc</A></TD><TD ><A HREF = "fix_planeforce.html">planeforce</A></TD><TD ><A HREF = "fix_poems.html">poems</A></TD><TD ><A HREF = "fix_pour.html">pour</A></TD><TD ><A HREF = "fix_print.html">print</A></TD><TD ><A HREF = "fix_rdf.html">rdf</A></TD><TD ><A HREF = "fix_recenter.html">recenter</A></TD></TR>
-<TR ALIGN="center"><TD ><A HREF = "fix_rigid.html">rigid</A></TD><TD ><A HREF = "fix_setforce.html">setforce</A></TD><TD ><A HREF = "fix_shake.html">shake</A></TD><TD ><A HREF = "fix_spring.html">spring</A></TD><TD ><A HREF = "fix_spring_rg.html">spring/rg</A></TD><TD ><A HREF = "fix_spring_self.html">spring/self</A></TD><TD ><A HREF = "fix_temp_rescale.html">temp/rescale</A></TD><TD ><A HREF = "fix_tmd.html">tmd</A></TD></TR>
-<TR ALIGN="center"><TD ><A HREF = "fix_uniaxial.html">uniaxial</A></TD><TD ><A HREF = "fix_viscous.html">viscous</A></TD><TD ><A HREF = "fix_volume_rescale.html">volume/rescale</A></TD><TD ><A HREF = "fix_wall_gran.html">wall/gran</A></TD><TD ><A HREF = "fix_wall_lj93.html">wall/lj93</A></TD><TD ><A HREF = "fix_wall_lj126.html">wall/lj126</A></TD><TD ><A HREF = "fix_wall_reflect.html">wall/reflect</A></TD><TD ><A HREF = "fix_wiggle.html">wiggle</A> 
+<TR ALIGN="center"><TD ><A HREF = "fix_addforce.html">addforce</A></TD><TD ><A HREF = "fix_aveforce.html">aveforce</A></TD><TD ><A HREF = "fix_ave_spatial.html">ave/spatial</A></TD><TD ><A HREF = "fix_ave_time.html">ave/time</A></TD><TD ><A HREF = "fix_box_relax.html">box/relax</A></TD><TD ><A HREF = "fix_com.html">com</A></TD><TD ><A HREF = "fix_deform.html">deform</A></TD><TD ><A HREF = "fix_deposit.html">deposit</A></TD></TR>
+<TR ALIGN="center"><TD ><A HREF = "fix_drag.html">drag</A></TD><TD ><A HREF = "fix_efield.html">efield</A></TD><TD ><A HREF = "fix_enforce2d.html">enforce2d</A></TD><TD ><A HREF = "fix_freeze.html">freeze</A></TD><TD ><A HREF = "fix_gran_diag.html">gran/diag</A></TD><TD ><A HREF = "fix_gravity.html">gravity</A></TD><TD ><A HREF = "fix_gyration.html">gyration</A></TD><TD ><A HREF = "fix_indent.html">indent</A></TD></TR>
+<TR ALIGN="center"><TD ><A HREF = "fix_langevin.html">langevin</A></TD><TD ><A HREF = "fix_lineforce.html">lineforce</A></TD><TD ><A HREF = "fix_msd.html">msd</A></TD><TD ><A HREF = "fix_momentum.html">momentum</A></TD><TD ><A HREF = "fix_nph.html">nph</A></TD><TD ><A HREF = "fix_npt.html">npt</A></TD><TD ><A HREF = "fix_nve.html">nve</A></TD><TD ><A HREF = "fix_nve_gran.html">nve/gran</A></TD></TR>
+<TR ALIGN="center"><TD ><A HREF = "fix_nve_noforce.html">nve/noforce</A></TD><TD ><A HREF = "fix_nvt.html">nvt</A></TD><TD ><A HREF = "fix_orient_fcc.html">orient/fcc</A></TD><TD ><A HREF = "fix_planeforce.html">planeforce</A></TD><TD ><A HREF = "fix_poems.html">poems</A></TD><TD ><A HREF = "fix_pour.html">pour</A></TD><TD ><A HREF = "fix_print.html">print</A></TD><TD ><A HREF = "fix_rdf.html">rdf</A></TD></TR>
+<TR ALIGN="center"><TD ><A HREF = "fix_recenter.html">recenter</A></TD><TD ><A HREF = "fix_rigid.html">rigid</A></TD><TD ><A HREF = "fix_setforce.html">setforce</A></TD><TD ><A HREF = "fix_shake.html">shake</A></TD><TD ><A HREF = "fix_spring.html">spring</A></TD><TD ><A HREF = "fix_spring_rg.html">spring/rg</A></TD><TD ><A HREF = "fix_spring_self.html">spring/self</A></TD><TD ><A HREF = "fix_temp_rescale.html">temp/rescale</A></TD></TR>
+<TR ALIGN="center"><TD ><A HREF = "fix_tmd.html">tmd</A></TD><TD ><A HREF = "fix_uniaxial.html">uniaxial</A></TD><TD ><A HREF = "fix_viscous.html">viscous</A></TD><TD ><A HREF = "fix_volume_rescale.html">volume/rescale</A></TD><TD ><A HREF = "fix_wall_gran.html">wall/gran</A></TD><TD ><A HREF = "fix_wall_lj93.html">wall/lj93</A></TD><TD ><A HREF = "fix_wall_lj126.html">wall/lj126</A></TD><TD ><A HREF = "fix_wall_reflect.html">wall/reflect</A></TD></TR>
+<TR ALIGN="center"><TD ><A HREF = "fix_wiggle.html">wiggle</A> 
 </TD></TR></TABLE></DIV>
 
 <HR>

doc/Section_commands.txt

@@ -377,6 +377,7 @@ description:
 "ave/time"_fix_ave_time.html,
 "box/relax"_fix_box_relax.html,
 "com"_fix_com.html,
+"deform"_fix_deform.html,
 "deposit"_fix_deposit.html,
 "drag"_fix_drag.html,
 "efield"_fix_efield.html,

doc/create_box.html

@@ -45,9 +45,9 @@ origin given by a = (xhi-xlo,0,0); b = (xy,yhi-ylo,0); c =
 </P>
 <P>A prism region used with the create_box command must have tilt factors
 (xy,xz,yz) that do not skew the box more than half the distance of the
-opposing box length.  For example, if ylo = 2 and yhi = 12, then the y
-box length is 10 and the xy tilt factor must be between -5 and 5.
-Similarly, both xz and yz must be between -(zhi-zlo)/2 and
+perpendicular box length.  For example, if ylo = 2 and yhi = 12, then
+the y box length is 10 and the xy tilt factor must be between -5 and
+5.  Similarly, both xz and yz must be between -(zhi-zlo)/2 and
 +(zhi-zlo)/2.  From a mechanics persepctive this is equivalent to
 saying the shear strain of the system (sideways displacement divided
 by perpendicular box length) must be between -0.5 and 0.5.

doc/create_box.txt

@@ -42,9 +42,9 @@ origin given by a = (xhi-xlo,0,0); b = (xy,yhi-ylo,0); c =
 
 A prism region used with the create_box command must have tilt factors
 (xy,xz,yz) that do not skew the box more than half the distance of the
-opposing box length.  For example, if ylo = 2 and yhi = 12, then the y
-box length is 10 and the xy tilt factor must be between -5 and 5.
-Similarly, both xz and yz must be between -(zhi-zlo)/2 and
+perpendicular box length.  For example, if ylo = 2 and yhi = 12, then
+the y box length is 10 and the xy tilt factor must be between -5 and
+5.  Similarly, both xz and yz must be between -(zhi-zlo)/2 and
 +(zhi-zlo)/2.  From a mechanics persepctive this is equivalent to
 saying the shear strain of the system (sideways displacement divided
 by perpendicular box length) must be between -0.5 and 0.5.

doc/read_data.html

@@ -97,8 +97,8 @@ parallelepiped is defined.  The parallelepiped has its "origin" at
 (xhi-xlo,0,0); b = (xy,yhi-ylo,0); c = (xz,yz,zhi-zlo).
 </P>
 <P>The tilt factors (xy,xz,yz) must not skew the box more than half the
-distance of the opposing box length.  For example, if ylo = 2 and yhi
-= 12, then the y box length is 10 and the xy tilt factor must be
+distance of the perpendicular box length.  For example, if ylo = 2 and
+yhi = 12, then the y box length is 10 and the xy tilt factor must be
 between -5 and 5.  Similarly, both xz and yz must be between
 -(zhi-zlo)/2 and +(zhi-zlo)/2.  From a mechanics persepctive this is
 equivalent to saying the shear strain of the system (sideways

doc/read_data.txt

@@ -92,8 +92,8 @@ parallelepiped is defined.  The parallelepiped has its "origin" at
 (xhi-xlo,0,0); b = (xy,yhi-ylo,0); c = (xz,yz,zhi-zlo).
 
 The tilt factors (xy,xz,yz) must not skew the box more than half the
-distance of the opposing box length.  For example, if ylo = 2 and yhi
-= 12, then the y box length is 10 and the xy tilt factor must be
+distance of the perpendicular box length.  For example, if ylo = 2 and
+yhi = 12, then the y box length is 10 and the xy tilt factor must be
 between -5 and 5.  Similarly, both xz and yz must be between
 -(zhi-zlo)/2 and +(zhi-zlo)/2.  From a mechanics persepctive this is
 equivalent to saying the shear strain of the system (sideways