simplify and modernize code a little
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@ -689,11 +689,9 @@ void Atom::create_avec(const std::string &style, int narg, char **arg, int trysu
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std::string estyle = style + "/";
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if (sflag == 1) estyle += lmp->suffix;
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else estyle += lmp->suffix2;
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atom_style = new char[estyle.size()+1];
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strcpy(atom_style,estyle.c_str());
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atom_style = utils::strdup(estyle);
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} else {
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atom_style = new char[style.size()+1];
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strcpy(atom_style,style.c_str());
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atom_style = utils::strdup(style);
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}
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// if molecular system:
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@ -217,7 +217,7 @@ int ComputeDihedralLocal::compute_dihedrals(int flag)
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// loop over all atoms and their dihedrals
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m = n = 0;
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m = 0;
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for (atom2 = 0; atom2 < nlocal; atom2++) {
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if (!(mask[atom2] & groupbit)) continue;
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@ -306,7 +306,7 @@ int ComputeDihedralLocal::compute_dihedrals(int flag)
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if (pstr) input->variable->internal_set(pvar,phi);
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}
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for (n = 0; n < nvalues; n++) {
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for (int n = 0; n < nvalues; n++) {
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switch (bstyle[n]) {
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case PHI:
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ptr[n] = 180.0*phi/MY_PI;
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@ -237,18 +237,16 @@ double ComputePressure::compute_scalar()
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// invoke temperature if it hasn't been already
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double t;
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if (keflag) {
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if (temperature->invoked_scalar != update->ntimestep)
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t = temperature->compute_scalar();
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else t = temperature->scalar;
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temperature->compute_scalar();
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}
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if (dimension == 3) {
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inv_volume = 1.0 / (domain->xprd * domain->yprd * domain->zprd);
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virial_compute(3,3);
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if (keflag)
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scalar = (temperature->dof * boltz * t +
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scalar = (temperature->dof * boltz * temperature->scalar +
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virial[0] + virial[1] + virial[2]) / 3.0 * inv_volume * nktv2p;
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else
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scalar = (virial[0] + virial[1] + virial[2]) / 3.0 * inv_volume * nktv2p;
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@ -256,7 +254,7 @@ double ComputePressure::compute_scalar()
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inv_volume = 1.0 / (domain->xprd * domain->yprd);
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virial_compute(2,2);
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if (keflag)
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scalar = (temperature->dof * boltz * t +
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scalar = (temperature->dof * boltz * temperature->scalar +
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virial[0] + virial[1]) / 2.0 * inv_volume * nktv2p;
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else
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scalar = (virial[0] + virial[1]) / 2.0 * inv_volume * nktv2p;
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@ -171,7 +171,7 @@ void ComputeTempDeform::compute_vector()
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double *h_ratelo = domain->h_ratelo;
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double massone, t[6];
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for (int i = 0; i < 6; i++) t[i] = 0.0;
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for (auto &ti : t) ti = 0.0;
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for (int i = 0; i < nlocal; i++)
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if (mask[i] & groupbit) {
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@ -276,7 +276,7 @@ void ComputeTempSphere::compute_vector()
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// point particles will not contribute rotation due to radius = 0
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double massone,inertiaone,t[6];
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for (int i = 0; i < 6; i++) t[i] = 0.0;
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for (auto &ti : t) ti = 0.0;
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if (mode == ALL) {
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for (int i = 0; i < nlocal; i++)
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@ -176,28 +176,20 @@ void CreateAtoms::command(int narg, char **arg)
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} else if (strcmp(arg[iarg],"var") == 0) {
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if (iarg+2 > narg) error->all(FLERR,"Illegal create_atoms command");
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delete [] vstr;
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int n = strlen(arg[iarg+1]) + 1;
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vstr = new char[n];
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strcpy(vstr,arg[iarg+1]);
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vstr = utils::strdup(arg[iarg+1]);
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varflag = 1;
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iarg += 2;
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} else if (strcmp(arg[iarg],"set") == 0) {
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if (iarg+3 > narg) error->all(FLERR,"Illegal create_atoms command");
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if (strcmp(arg[iarg+1],"x") == 0) {
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delete [] xstr;
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int n = strlen(arg[iarg+2]) + 1;
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xstr = new char[n];
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strcpy(xstr,arg[iarg+2]);
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xstr = utils::strdup(arg[iarg+2]);
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} else if (strcmp(arg[iarg+1],"y") == 0) {
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delete [] ystr;
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int n = strlen(arg[iarg+2]) + 1;
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ystr = new char[n];
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strcpy(ystr,arg[iarg+2]);
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ystr = utils::strdup(arg[iarg+2]);
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} else if (strcmp(arg[iarg+1],"z") == 0) {
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delete [] zstr;
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int n = strlen(arg[iarg+2]) + 1;
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zstr = new char[n];
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strcpy(zstr,arg[iarg+2]);
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zstr = utils::strdup(arg[iarg+2]);
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} else error->all(FLERR,"Illegal create_atoms command");
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iarg += 3;
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} else if (strcmp(arg[iarg],"rotate") == 0) {
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@ -1884,9 +1884,9 @@ void Domain::set_boundary(int narg, char **arg, int flag)
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}
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}
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for (int idim = 0; idim < 3; idim++)
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if ((boundary[idim][0] == 0 && boundary[idim][1]) ||
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(boundary[idim][0] && boundary[idim][1] == 0))
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for (auto &bdim : boundary)
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if ((bdim[0] == 0 && bdim[1]) ||
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(bdim[0] && bdim[1] == 0))
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error->all(FLERR,"Both sides of boundary must be periodic");
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if (boundary[0][0] == 0) xperiodic = 1;
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@ -1988,12 +1988,12 @@ void Domain::print_box(const std::string &prefix)
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void Domain::boundary_string(char *str)
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{
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int m = 0;
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for (int idim = 0; idim < 3; idim++) {
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for (int iside = 0; iside < 2; iside++) {
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if (boundary[idim][iside] == 0) str[m++] = 'p';
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else if (boundary[idim][iside] == 1) str[m++] = 'f';
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else if (boundary[idim][iside] == 2) str[m++] = 's';
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else if (boundary[idim][iside] == 3) str[m++] = 'm';
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for (auto &bdim : boundary) {
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for (auto &bside : bdim) {
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if (bside == 0) str[m++] = 'p';
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else if (bside == 1) str[m++] = 'f';
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else if (bside == 2) str[m++] = 's';
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else if (bside == 3) str[m++] = 'm';
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}
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str[m++] = ' ';
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}
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