You typically should specify special_bonds 0 1 1 +to use this bond style. LAMMPS will issue a warning it that's not the +case. +
Related commands:
bond_coeff, delete_bonds diff --git a/doc/bond_fene.txt b/doc/bond_fene.txt index 6b2b2d2a4a..78f399e8fd 100644 --- a/doc/bond_fene.txt +++ b/doc/bond_fene.txt @@ -45,6 +45,10 @@ This bond style can only be used if LAMMPS was built with the "molecular" package (which it is by default). See the "Making LAMMPS"_Section_start.html#2_3 section for more info on packages. +You typically should specify "special_bonds 0 1 1"_special_bonds.html +to use this bond style. LAMMPS will issue a warning it that's not the +case. + [Related commands:] "bond_coeff"_bond_coeff.html, "delete_bonds"_delete_bonds.html diff --git a/doc/bond_fene_expand.html b/doc/bond_fene_expand.html index a122517286..586f9b91e5 100644 --- a/doc/bond_fene_expand.html +++ b/doc/bond_fene_expand.html @@ -53,6 +53,10 @@ or read_restart commands: "molecular" package (which it is by default). See the Making LAMMPS section for more info on packages.
+You typically should specify special_bonds 0 1 1 +to use this bond style. LAMMPS will issue a warning it that's not the +case. +
Related commands:
bond_coeff, delete_bonds diff --git a/doc/bond_fene_expand.txt b/doc/bond_fene_expand.txt index e84623fba4..142766ff86 100644 --- a/doc/bond_fene_expand.txt +++ b/doc/bond_fene_expand.txt @@ -50,6 +50,10 @@ This bond style can only be used if LAMMPS was built with the "molecular" package (which it is by default). See the "Making LAMMPS"_Section_start.html#2_3 section for more info on packages. +You typically should specify "special_bonds 0 1 1"_special_bonds.html +to use this bond style. LAMMPS will issue a warning it that's not the +case. + [Related commands:] "bond_coeff"_bond_coeff.html, "delete_bonds"_delete_bonds.html diff --git a/doc/fix_bond_swap.html b/doc/fix_bond_swap.html index e0fe318532..96c198ca65 100644 --- a/doc/fix_bond_swap.html +++ b/doc/fix_bond_swap.html @@ -23,7 +23,7 @@
Examples:
-fix 1 all bond/swap 0.5 1.5 598934 +fix 1 all bond/swap 0.5 1.3 598934Description:
diff --git a/doc/fix_bond_swap.txt b/doc/fix_bond_swap.txt index fb796e715b..ed906b61b5 100755 --- a/doc/fix_bond_swap.txt +++ b/doc/fix_bond_swap.txt @@ -20,7 +20,7 @@ seed = random # seed (positive integer) :ul [Examples:] -fix 1 all bond/swap 0.5 1.5 598934 :pre +fix 1 all bond/swap 0.5 1.3 598934 :pre [Description:] diff --git a/doc/special_bonds.html b/doc/special_bonds.html index a3f5ac0b86..824a3d4132 100644 --- a/doc/special_bonds.html +++ b/doc/special_bonds.html @@ -24,7 +24,7 @@ special_bonds c1 c2 c3 c4 c5 c6special_bonds charmm special_bonds amber -special_bonds 0.0 0.0 1.0 +special_bonds 0 1 1 special_bonds 0.0 0.0 1.0 0.0 0.0 0.5Description: @@ -65,6 +65,9 @@ interactions and to 0.0 0.0 0.833 for Coulombic interactions, which is the default for a particular version of the AMBER force field, where the last value is 5/6.
+For a lj units system with FENE bonds a +setting of special bonds 0 1 1 should be used. +
A special_bonds command with 3 coefficients sets the 1-2, 1-3, and 1-4 coefficients for both LJ and Coulombic terms to those values.
diff --git a/doc/special_bonds.txt b/doc/special_bonds.txt index b7e5dd24f7..548df8c7fc 100644 --- a/doc/special_bonds.txt +++ b/doc/special_bonds.txt @@ -21,7 +21,7 @@ Examples: special_bonds charmm special_bonds amber -special_bonds 0.0 0.0 1.0 +special_bonds 0 1 1 special_bonds 0.0 0.0 1.0 0.0 0.0 0.5 :pre [Description:] @@ -62,6 +62,9 @@ interactions and to 0.0 0.0 0.833 for Coulombic interactions, which is the default for a particular version of the AMBER force field, where the last value is 5/6. +For a "lj units"_units.html system with "FENE bonds"_bond_fene.html a +setting of special bonds 0 1 1 should be used. + A special_bonds command with 3 coefficients sets the 1-2, 1-3, and 1-4 coefficients for both LJ and Coulombic terms to those values.