make recent change to fix ti/spring docs use mathjax

This commit is contained in:
Axel Kohlmeyer
2021-02-05 17:01:28 -05:00
parent c74c3b3f22
commit 960713be3b
2 changed files with 6 additions and 4 deletions

View File

@ -135,10 +135,11 @@ system's potential energy as part of :doc:`thermodynamic output
This fix computes a global scalar and a global vector quantities which This fix computes a global scalar and a global vector quantities which
can be accessed by various :doc:`output commands <Howto_output>`. The can be accessed by various :doc:`output commands <Howto_output>`. The
scalar is an energy which is the sum of the spring energy for each scalar is an energy which is the sum of the spring energy for each
atom, where the per-atom energy is 0.5 \* k \* r\^2. The vector stores atom, where the per-atom energy is :math:`0.5 \cdot k \cdot r^2`.
2 values. The first value is the coupling parameter lambda. The The vector stores 2 values. The first value is the coupling parameter lambda.
second value is the derivative of lambda with respect to the integer The second value is the derivative of lambda with respect to the integer
timestep *s*, i.e. d lambda / ds. In order to obtain d lambda / dt, timestep *s*, i.e. :math:`\frac{d \lambda}{d s}`. In order to obtain
:math:`\frac{d \lambda}{d t}`,
where t is simulation time, this 2nd value needs to be divided by the where t is simulation time, this 2nd value needs to be divided by the
timestep size (e.g. 0.5 fs). The scalar and vector values calculated timestep size (e.g. 0.5 fs). The scalar and vector values calculated
by this fix are "extensive". by this fix are "extensive".

View File

@ -597,6 +597,7 @@ Dcut
de de
dE dE
De De
deallocated
decorrelation decorrelation
debye debye
Debye Debye