diff --git a/doc/src/Bibliography.rst b/doc/src/Bibliography.rst
index d564a77194..cf64eb46b9 100644
--- a/doc/src/Bibliography.rst
+++ b/doc/src/Bibliography.rst
@@ -463,18 +463,36 @@ Bibliography
**(Frenkel)**
Frenkel and Smit, Understanding Molecular Simulation, Academic Press, London, 2002.
-**(GLE4MD)**
- `https://gle4md.org/ `_
+**(Fu)**
+ Fu, Peng, Yuan, Kfoury, Young, Comput. Phys. Commun, 210, 193-203(2017).
**(Gao)**
Gao and Weber, Nuclear Instruments and Methods in Physics Research B 191 (2012) 504.
+**(Gingrich)**
+ Gingrich, `MSc thesis` ` (2010).
+
+**(Gissinger2017)**
+ Gissinger, Jensen and Wise, Polymer, 128, 211-217 (2017).
+
+**(Gissinger2020)**
+ Gissinger, Jensen and Wise, Macromolecules, 53, 22, 9953-9961 (2020).
+
**(Gissinger)**
- Gissinger, Jensen and Wise, Polymer, 128, 211 (2017).
+ Jacob R. Gissinger, Scott R. Zavada, Joseph G. Smith, Josh Kemppainen, Ivan Gallegos, Gregory M. Odegard, Emilie J. Siochi, and Kristopher E. Wise, Carbon, 202, 336-347 (2023).
+
+**(Gissinger2024)**
+ J. R. Gissinger, I. Nikiforov, Y. Afshar, B. Waters, M. Choi, D. S. Karls, A. Stukowski, W. Im, H. Heinz, A. Kohlmeyer, and E. B. Tadmor, J Phys Chem B, 128, 3282-3297 (2024).
+
+**(Gloor)**
+ Gloor, J Chem Phys, 123, 134703 (2005)
**(Glosli)**
Glosli, unpublished, 2005. Streitz, Glosli, Patel, Chan, Yates, de Supinski, Sexton and Gunnels, Journal of Physics: Conference Series, 46, 254 (2006).
+**(Goff)**
+ Goff, Zhang, Negre, Rohskopf, Niklasson, Journal of Chemical Theory and Computation 19, no. 13 (2023).
+
**(Goldman1)**
Goldman, Reed and Fried, J. Chem. Phys. 131, 204103 (2009)
@@ -508,6 +526,9 @@ Bibliography
**(Guo)**
Guo and Thirumalai, Journal of Molecular Biology, 263, 323-43 (1996).
+**(Gupta)**
+ Gupta ,Phys Rev. B, 23, 6265-6270 (1981).
+
**(Hardy)**
David Hardy thesis: Multilevel Summation for the Fast Evaluation of Forces for the Simulation of Biomolecules, University of Illinois at Urbana-Champaign, (2006).
@@ -529,6 +550,9 @@ Bibliography
**(Henrich)**
O.\ Henrich, Y. A. Gutierrez-Fosado, T. Curk, T. E. Ouldridge, Eur. Phys. J. E 41, 57 (2018).
+**(Herman)**
+ M. F. Herman, E. J. Bruskin, B. J. Berne, J Chem Phys, 76, 5150 (1982).
+
**(Hess)**
Hess, B. The Journal of Chemical Physics 2002, 116 (1), 209-217.
@@ -550,24 +574,42 @@ Bibliography
**(Hoover)**
Hoover, Phys Rev A, 31, 1695 (1985).
+**(Huang)**
+ Huang, Zhang, Yuan, Gao, Zhang, Nano Lett. 13, 4546(2013).
+
+**(Huang2014)**
+ X. Huang, "Exploring critical-state behavior using DEM", Doctoral dissertation, Imperial College. (2014). https://doi.org/10.25560/25316
+
+**(Hu)**
+ Hu, and Adams J. Comp. Physics, 213, 844-861 (2006).
+
+**(Hu)**
+ Hu, J. Chem. Theory Comput. 10, 5254 (2014).
+
**(Hummer)**
Hummer, Gronbech-Jensen, Neumann, J Chem Phys, 109, 2791 (1998)
**(Hunt)**
Hunt, Mol Simul, 42, 347 (2016).
+**(Ikeshoji)**
+ Ikeshoji and Hafskjold, Molecular Physics, 81, 251-261 (1994).
+
+**(Ikeshoji2)**
+ Ikeshoji, Hafskjold, Furuholt, Mol Sim, 29, 101-109, (2003).
+
+**(Ilie)**
+ Ilie, Briels, den Otter, Journal of Chemical Physics, 142, 114103 (2015).
+
+**(In 't Veld)**
+ In 't Veld, Ismail, Grest, J Chem Phys (accepted) (2007).
+
**(IPI)**
`https://ipi-code.org/ `
**(IPI-CPC)**
Ceriotti, More and Manolopoulos, Comp Phys Comm, 185, 1019-1026 (2014).
-**(Ikeshoji)**
- Ikeshoji and Hafskjold, Molecular Physics, 81, 251-261 (1994).
-
-**(In 't Veld)**
- In 't Veld, Ismail, Grest, J Chem Phys (accepted) (2007).
-
**(Isele-Holder)**
Isele-Holder, Mitchell, Ismail, J Chem Phys, 137, 174107 (2012).
@@ -586,6 +628,9 @@ Bibliography
**(Izvekov)**
Izvekov, Voth, J Chem Phys 123, 134105 (2005).
+**(Jadhao)**
+ Jadhao, Solis, Olvera de la Cruz, J Chem Phys, 138, 054119 (2013)
+
**(Janssens)**
Janssens, Olmsted, Holm, Foiles, Plimpton, Derlet, Nature Materials, 5, 124-127 (2006).
@@ -598,6 +643,15 @@ Bibliography
**(Jiang)**
Jiang, Hardy, Phillips, MacKerell, Schulten, and Roux, J Phys Chem Lett, 2, 87-92 (2011).
+**(Jiang1)**
+ Jiang, Hardy, Phillips, MacKerell, Schulten, and Roux, J Phys Chem Lett, 2, 87-92 (2011).
+
+**(Jiang2)**
+ J.-W. Jiang, Nanotechnology 26, 315706 (2015).
+
+**(Jiang3)**
+ J.-W. Jiang, Acta Mech. Solida. Sin 32, 17 (2019).
+
**(Johnson et al, 1971)**
Johnson, K. L., Kendall, K., & Roberts, A. D. (1971). Surface energy and the contact of elastic solids. Proc. R. Soc. Lond. A, 324(1558), 301-313.
@@ -670,6 +724,9 @@ Bibliography
**(Larentzos)**
J.P. Larentzos, J.K. Brennan, J.D. Moore, and W.D. Mattson, "LAMMPS Implementation of Constant Energy Dissipative Particle Dynamics (DPD-E)", ARL-TR-6863, U.S. Army Research
+**(Landsgesell)**
+ J. Landsgesell, P. Hebbeker, O. Rud, R. Lunkad, P. Kosovan, and C. Holm, Macromolecules 53, 3007-3020 (2020).
+
**(Larentzos1)**
J.P. Larentzos, J.K. Brennan, J.D. Moore, M. Lisal and W.D. Mattson, "Parallel Implementation of Isothermal and Isoenergetic Dissipative Particle Dynamics Using Shardlow-Like Splitting
@@ -679,9 +736,12 @@ Bibliography
**(Larsen)**
Larsen, Schmidt, Schiotz, Modelling Simul Mater Sci Eng, 24, 055007 (2016).
-**(Lebedeva et al.)**
+**(Lebedeva1)**
I.\ V. Lebedeva, A. A. Knizhnik, A. M. Popov, Y. E. Lozovik, B. V. Potapkin, Phys. Rev. B, 84, 245437 (2011)
+**(Lebedeva2)**
+ I. V. Lebedeva, A. A. Knizhnik, A. M. Popov, Y. E. Lozovik, B. V. Potapkin, Physica E: 44, 949-954 (2012)
+
**(Lechman)**
Lechman, et al, in preparation (2010).
@@ -691,6 +751,9 @@ Bibliography
**(Lee2)**
Lee, Baskes, Kim, Cho. Phys. Rev. B, 64, 184102 (2001).
+**(Lee2020)**
+ C.W. Lee, et al. (2020) Physical Review B, 102(2), 024107.
+
**(Lenart)**
Lenart , Jusufi, and Panagiotopoulos, J Chem Phys, 126, 044509 (2007).
@@ -715,6 +778,9 @@ Bibliography
**(Li2015_JCP)**
Li, Yazdani, Tartakovsky, Karniadakis, J Chem Phys, 143: 014101 (2015). DOI:10.1063/1.4923254.
+**(Liang)**
+ Liang, Phillpot, Sinnott Phys. Rev. B79 245110, (2009), Erratum: Phys. Rev. B85 199903(E), (2012)
+
**(Lisal)**
M.\ Lisal, J.K. Brennan, J. Bonet Avalos, "Dissipative particle dynamics at isothermal, isobaric, isoenergetic, and isoenthalpic conditions using Shardlow-like splitting algorithms.",
diff --git a/doc/src/fix_deform_pressure.rst b/doc/src/fix_deform_pressure.rst
index b01e898c65..2d1f8fb761 100644
--- a/doc/src/fix_deform_pressure.rst
+++ b/doc/src/fix_deform_pressure.rst
@@ -397,5 +397,4 @@ The option defaults are normalize/pressure = no.
.. _Huang2014:
-**(Huang2014)** X. Huang, "Exploring critical-state behavior using DEM",
-Doctoral dissertation, Imperial College. (2014). https://doi.org/10.25560/25316
+**(Huang2014)** X. Huang, "Exploring critical-state behavior using DEM", Doctoral dissertation, Imperial College. (2014). https://doi.org/10.25560/25316
diff --git a/doc/src/fix_langevin_drude.rst b/doc/src/fix_langevin_drude.rst
index c53c29b3ac..16a8817d6d 100644
--- a/doc/src/fix_langevin_drude.rst
+++ b/doc/src/fix_langevin_drude.rst
@@ -300,5 +300,4 @@ The option defaults are zero = no.
.. _Jiang1:
-**(Jiang1)** Jiang, Hardy, Phillips, MacKerell, Schulten, and Roux, J
-Phys Chem Lett, 2, 87-92 (2011).
+**(Jiang1)** Jiang, Hardy, Phillips, MacKerell, Schulten, and Roux, J Phys Chem Lett, 2, 87-92 (2011).