git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@431 f3b2605a-c512-4ea7-a41b-209d697bcdaa

This commit is contained in:
sjplimp
2007-03-22 17:05:51 +00:00
parent 2f25e80bf2
commit 9926a91608
4 changed files with 40 additions and 1 deletions

View File

@ -646,6 +646,31 @@ void Group::vcm(int igroup, double masstotal, double *cm)
cm[2] /= masstotal;
}
/* ----------------------------------------------------------------------
compute the total force on group of atoms
------------------------------------------------------------------------- */
void Group::fcm(int igroup, double *cm)
{
int groupbit = bitmask[igroup];
double **f = atom->f;
int *mask = atom->mask;
int nlocal = atom->nlocal;
double flocal[3];
flocal[0] = flocal[1] = flocal[2] = 0.0;
for (int i = 0; i < nlocal; i++)
if (mask[i] & groupbit) {
flocal[0] += f[i][0];
flocal[1] += f[i][1];
flocal[2] += f[i][2];
}
MPI_Allreduce(flocal,cm,3,MPI_DOUBLE,MPI_SUM,world);
}
/* ----------------------------------------------------------------------
compute the radius-of-gyration of group around center-of-mass cm
must unwrap atoms to compute Rg correctly

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@ -41,6 +41,7 @@ class Group : protected Pointers {
void bounds(int, double *); // bounds of atoms in group
void xcm(int, double, double *); // center-of-mass coords of group
void vcm(int, double, double *); // center-of-mass velocity of group
void fcm(int, double *); // total force on group
double gyration(int, double, double *); // radius-of-gyration of group
void angmom(int, double *, double *); // angular momentum of group
void inertia(int, double *, double [3][3]); // inertia tensor

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@ -145,6 +145,7 @@ DumpStyle(xyz,DumpXYZ)
#include "fix_nph.h"
#include "fix_npt.h"
#include "fix_nve.h"
#include "fix_nve_noforce.h"
#include "fix_nvt.h"
#include "fix_plane_force.h"
#include "fix_print.h"
@ -192,6 +193,7 @@ FixStyle(msd,FixMSD)
FixStyle(nph,FixNPH)
FixStyle(npt,FixNPT)
FixStyle(nve,FixNVE)
FixStyle(nve,FixNVENoforce)
FixStyle(nvt,FixNVT)
FixStyle(orient/fcc,FixOrientFCC)
FixStyle(print,FixPrint)

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@ -569,7 +569,7 @@ double Variable::evaluate(char *str, Tree *tree)
// customize by adding group function to this list and to if statement
// mass(group),charge(group),xcm(group,dim),vcm(group,dim),
// bound(group,xmin),gyration(group)
// fcm(group,dim),bound(group,xmin),gyration(group)
} else if (strcmp(func,"mass") == 0) {
if (arg2) error->all("Cannot evaluate variable");
@ -610,6 +610,17 @@ double Variable::evaluate(char *str, Tree *tree)
else if (strcmp(arg2,"z") == 0) answer = vcm[2];
else error->all("Cannot evaluate variable");
} else if (strcmp(func,"fcm") == 0) {
if (!arg2) error->all("Cannot evaluate variable");
int igroup = group->find(arg1);
if (igroup == -1) error->all("Variable group ID does not exist");
double fcm[3];
group->fcm(igroup,fcm);
if (strcmp(arg2,"x") == 0) answer = fcm[0];
else if (strcmp(arg2,"y") == 0) answer = fcm[1];
else if (strcmp(arg2,"z") == 0) answer = fcm[2];
else error->all("Cannot evaluate variable");
} else if (strcmp(func,"bound") == 0) {
if (!arg2) error->all("Cannot evaluate variable");
int igroup = group->find(arg1);