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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@4697 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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sjplimp
2010-09-06 16:56:31 +00:00
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doc/Section_example.html
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@ -32,8 +32,10 @@ Site</A>.
</P>
<DIV ALIGN=center><TABLE BORDER=1 >
<TR><TD >colloid</TD><TD > big colloid particles in a small particle solvent, 2d system</TD></TR>
<TR><TD >comb</TD><TD > models using the COMB potential</TD></TR>
<TR><TD >crack</TD><TD > crack propagation in a 2d solid</TD></TR>
<TR><TD >dipole</TD><TD > point dipolar particles, 2d system</TD></TR>
<TR><TD >eim</TD><TD > NaCl using the EIM potential</TD></TR>
<TR><TD >elastic</TD><TD > zero temperature elastic constant tensor of silicon</TD></TR>
<TR><TD >ellipse</TD><TD > ellipsoidal particles in spherical solvent, 2d system</TD></TR>
<TR><TD >flow</TD><TD > Couette and Poiseuille flow in a 2d channel</TD></TR>
@ -43,13 +45,14 @@ Site</A>.
<TR><TD >melt</TD><TD > rapid melt of 3d LJ system</TD></TR>
<TR><TD >micelle</TD><TD > self-assembly of small lipid-like molecules into 2d bilayers</TD></TR>
<TR><TD >min</TD><TD > energy minimization of 2d LJ melt</TD></TR>
<TR><TD >msst</TD><TD > MSST shock dynamics</TD></TR>
<TR><TD >nemd</TD><TD > non-equilibrium MD of 2d sheared system</TD></TR>
<TR><TD >obstacle</TD><TD > flow around two voids in a 2d channel</TD></TR>
<TR><TD >peptide</TD><TD > dynamics of a small solvated peptide chain (5-mer)</TD></TR>
<TR><TD >peri</TD><TD > Peridynamics example of cylinder hit by projectile</TD></TR>
<TR><TD >peri</TD><TD > Peridynamic model of cylinder impacted by indenter</TD></TR>
<TR><TD >pour</TD><TD > pouring of granular particles into a 3d box, then chute flow</TD></TR>
<TR><TD >prd</TD><TD > parallel replica dynamics of a vacancy diffusion in bulk Si</TD></TR>
<TR><TD >reax</TD><TD > simple example for ReaxFF force field</TD></TR>
<TR><TD >prd</TD><TD > parallel replica dynamics of a vacancy diffusion in bulk Si</TD></TR>
<TR><TD >reax</TD><TD > RDX and TATB models using the ReaxFF</TD></TR>
<TR><TD >rigid</TD><TD > rigid bodies modeled as independent or coupled</TD></TR>
<TR><TD >shear</TD><TD > sideways shear applied to 2d solid, with and without a void
</TD></TR></TABLE></DIV>
@ -65,17 +68,13 @@ lmp_linux < in.indent # run the problem
</P>
<PRE>../../tools/xmovie/xmovie -scale dump.indent
</PRE>
<P>There is also a directory "couple" in the examples sub-directory,
which contains a stand-alone code umbrella.cpp that links LAMMPS as a
library. The README describes how to build the code. The code itself
runs LAMMPS on a subset of processors, sets up a LAMMPS problem
by invoking LAMMPS input script commands one at a time, does
a run, grabs atom coordinates, changes one atom position, puts
them back into LAMMPS, and does another run.
<P>There is also a COUPLE directory which has examples of how to link to
LAMMPS as a library and drive it from a wrapper program. See the
README file for more info.
</P>
<P>This illustrates how an umbrella code could include new models and
physics while using LAMMPS to perform MD, or how the umbrella code
could call both LAMMPS and some other code to perform a coupled
calculation.
<P>There is also a USER directory which contains subdirectories of
user-provided examples for user packages. See the README files in
those directories for more info. See the doc/Section_start.html for
more info about user packages.
</P>
</HTML>