ICODE-ADC/lammps
4
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

remove a bunch of redundant tests and add checking for restarts and consecutive atom ids

Browse Source
This commit is contained in:
Axel Kohlmeyer
2020-06-17 20:40:04 -04:00
parent 5bb9700124
commit a200756d7b
1 changed files with 75 additions and 196 deletions
Download Patch File Download Diff File Expand all files Collapse all files

271
unittest/formats/test_atom_styles.cpp
View File

@ -55,6 +55,7 @@ protected:
delete lmp;
if (!verbose) ::testing::internal::GetCapturedStdout();
remove("test_atom_styles.data");
remove("test_atom_styles.restart");
}
};
@ -261,185 +262,14 @@ TEST_F(AtomStyleTest, atomic)
ASSERT_EQ(lmp->atom->nmax, 1);
ASSERT_EQ(lmp->atom->tag_enable, 1);
ASSERT_EQ(lmp->atom->molecular, 0);
ASSERT_EQ(lmp->atom->nellipsoids, 0);
ASSERT_EQ(lmp->atom->nlines, 0);
ASSERT_EQ(lmp->atom->ntris, 0);
ASSERT_EQ(lmp->atom->nbodies, 0);
ASSERT_EQ(lmp->atom->nbonds, 0);
ASSERT_EQ(lmp->atom->nangles, 0);
ASSERT_EQ(lmp->atom->ndihedrals, 0);
ASSERT_EQ(lmp->atom->nimpropers, 0);
ASSERT_EQ(lmp->atom->ntypes, 0);
ASSERT_EQ(lmp->atom->nbondtypes, 0);
ASSERT_EQ(lmp->atom->nangletypes, 0);
ASSERT_EQ(lmp->atom->ndihedraltypes, 0);
ASSERT_EQ(lmp->atom->nimpropertypes, 0);
ASSERT_EQ(lmp->atom->bond_per_atom, 0);
ASSERT_EQ(lmp->atom->angle_per_atom, 0);
ASSERT_EQ(lmp->atom->dihedral_per_atom, 0);
ASSERT_EQ(lmp->atom->improper_per_atom, 0);
ASSERT_EQ(lmp->atom->extra_bond_per_atom, 0);
ASSERT_EQ(lmp->atom->extra_angle_per_atom, 0);
ASSERT_EQ(lmp->atom->extra_dihedral_per_atom, 0);
ASSERT_EQ(lmp->atom->extra_improper_per_atom, 0);
ASSERT_EQ(lmp->atom->sphere_flag, 0);
ASSERT_EQ(lmp->atom->ellipsoid_flag, 0);
ASSERT_EQ(lmp->atom->line_flag, 0);
ASSERT_EQ(lmp->atom->tri_flag, 0);
ASSERT_EQ(lmp->atom->body_flag, 0);
ASSERT_EQ(lmp->atom->peri_flag, 0);
ASSERT_EQ(lmp->atom->electron_flag, 0);
ASSERT_EQ(lmp->atom->wavepacket_flag, 0);
ASSERT_EQ(lmp->atom->sph_flag, 0);
ASSERT_EQ(lmp->atom->molecule_flag, 0);
ASSERT_EQ(lmp->atom->molindex_flag, 0);
ASSERT_EQ(lmp->atom->molatom_flag, 0);
ASSERT_EQ(lmp->atom->q_flag, 0);
ASSERT_EQ(lmp->atom->mu_flag, 0);
ASSERT_EQ(lmp->atom->rmass_flag, 0);
ASSERT_EQ(lmp->atom->radius_flag, 0);
ASSERT_EQ(lmp->atom->omega_flag, 0);
ASSERT_EQ(lmp->atom->torque_flag, 0);
ASSERT_EQ(lmp->atom->angmom_flag, 0);
ASSERT_EQ(lmp->atom->vfrac_flag, 0);
ASSERT_EQ(lmp->atom->spin_flag, 0);
ASSERT_EQ(lmp->atom->eradius_flag, 0);
ASSERT_EQ(lmp->atom->ervel_flag, 0);
ASSERT_EQ(lmp->atom->erforce_flag, 0);
ASSERT_EQ(lmp->atom->cs_flag, 0);
ASSERT_EQ(lmp->atom->csforce_flag, 0);
ASSERT_EQ(lmp->atom->vforce_flag, 0);
ASSERT_EQ(lmp->atom->ervelforce_flag, 0);
ASSERT_EQ(lmp->atom->etag_flag, 0);
ASSERT_EQ(lmp->atom->rho_flag, 0);
ASSERT_EQ(lmp->atom->esph_flag, 0);
ASSERT_EQ(lmp->atom->cv_flag, 0);
ASSERT_EQ(lmp->atom->vest_flag, 0);
ASSERT_EQ(lmp->atom->dpd_flag, 0);
ASSERT_EQ(lmp->atom->edpd_flag, 0);
ASSERT_EQ(lmp->atom->tdpd_flag, 0);
ASSERT_EQ(lmp->atom->mesont_flag, 0);
ASSERT_EQ(lmp->atom->sp_flag, 0);
ASSERT_EQ(lmp->atom->x0_flag, 0);
ASSERT_EQ(lmp->atom->smd_flag, 0);
ASSERT_EQ(lmp->atom->damage_flag, 0);
ASSERT_EQ(lmp->atom->contact_radius_flag, 0);
ASSERT_EQ(lmp->atom->smd_data_9_flag, 0);
ASSERT_EQ(lmp->atom->smd_stress_flag, 0);
ASSERT_EQ(lmp->atom->eff_plastic_strain_flag, 0);
ASSERT_EQ(lmp->atom->eff_plastic_strain_rate_flag, 0);
ASSERT_EQ(lmp->atom->pdscale, 1.0);
ASSERT_NE(lmp->atom->tag, nullptr);
ASSERT_NE(lmp->atom->type, nullptr);
ASSERT_NE(lmp->atom->mask, nullptr);
ASSERT_NE(lmp->atom->image, nullptr);
ASSERT_NE(lmp->atom->x, nullptr);
ASSERT_NE(lmp->atom->v, nullptr);
ASSERT_NE(lmp->atom->f, nullptr);
ASSERT_EQ(lmp->atom->q_flag, 0);
ASSERT_EQ(lmp->atom->q, nullptr);
ASSERT_EQ(lmp->atom->mu, nullptr);
ASSERT_EQ(lmp->atom->omega, nullptr);
ASSERT_EQ(lmp->atom->angmom, nullptr);
ASSERT_EQ(lmp->atom->torque, nullptr);
ASSERT_EQ(lmp->atom->radius, nullptr);
ASSERT_EQ(lmp->atom->rmass, nullptr);
ASSERT_EQ(lmp->atom->ellipsoid, nullptr);
ASSERT_EQ(lmp->atom->line, nullptr);
ASSERT_EQ(lmp->atom->tri, nullptr);
ASSERT_EQ(lmp->atom->body, nullptr);
ASSERT_EQ(lmp->atom->molecule, nullptr);
ASSERT_EQ(lmp->atom->molindex, nullptr);
ASSERT_EQ(lmp->atom->molatom, nullptr);
ASSERT_EQ(lmp->atom->num_bond, nullptr);
ASSERT_EQ(lmp->atom->bond_type, nullptr);
ASSERT_EQ(lmp->atom->bond_atom, nullptr);
ASSERT_EQ(lmp->atom->num_angle, nullptr);
ASSERT_EQ(lmp->atom->angle_type, nullptr);
ASSERT_EQ(lmp->atom->angle_atom1, nullptr);
ASSERT_EQ(lmp->atom->angle_atom2, nullptr);
ASSERT_EQ(lmp->atom->angle_atom3, nullptr);
ASSERT_EQ(lmp->atom->num_dihedral, nullptr);
ASSERT_EQ(lmp->atom->dihedral_type, nullptr);
ASSERT_EQ(lmp->atom->dihedral_atom1, nullptr);
ASSERT_EQ(lmp->atom->dihedral_atom2, nullptr);
ASSERT_EQ(lmp->atom->dihedral_atom3, nullptr);
ASSERT_EQ(lmp->atom->dihedral_atom4, nullptr);
ASSERT_EQ(lmp->atom->num_improper, nullptr);
ASSERT_EQ(lmp->atom->improper_type, nullptr);
ASSERT_EQ(lmp->atom->improper_atom1, nullptr);
ASSERT_EQ(lmp->atom->improper_atom2, nullptr);
ASSERT_EQ(lmp->atom->improper_atom3, nullptr);
ASSERT_EQ(lmp->atom->improper_atom4, nullptr);
ASSERT_EQ(lmp->atom->maxspecial, 1);
ASSERT_EQ(lmp->atom->nspecial, nullptr);
ASSERT_EQ(lmp->atom->special, nullptr);
ASSERT_EQ(lmp->atom->vfrac, nullptr);
ASSERT_EQ(lmp->atom->s0, nullptr);
ASSERT_EQ(lmp->atom->x0, nullptr);
ASSERT_EQ(lmp->atom->sp, nullptr);
ASSERT_EQ(lmp->atom->fm, nullptr);
ASSERT_EQ(lmp->atom->fm_long, nullptr);
ASSERT_EQ(lmp->atom->spin, nullptr);
ASSERT_EQ(lmp->atom->eradius, nullptr);
ASSERT_EQ(lmp->atom->ervel, nullptr);
ASSERT_EQ(lmp->atom->erforce, nullptr);
ASSERT_EQ(lmp->atom->ervelforce, nullptr);
ASSERT_EQ(lmp->atom->cs, nullptr);
ASSERT_EQ(lmp->atom->csforce, nullptr);
ASSERT_EQ(lmp->atom->vforce, nullptr);
ASSERT_EQ(lmp->atom->etag, nullptr);
ASSERT_EQ(lmp->atom->uCond, nullptr);
ASSERT_EQ(lmp->atom->uMech, nullptr);
ASSERT_EQ(lmp->atom->uChem, nullptr);
ASSERT_EQ(lmp->atom->uCG, nullptr);
ASSERT_EQ(lmp->atom->uCGnew, nullptr);
ASSERT_EQ(lmp->atom->duChem, nullptr);
ASSERT_EQ(lmp->atom->dpdTheta, nullptr);
ASSERT_EQ(lmp->atom->cc, nullptr);
ASSERT_EQ(lmp->atom->cc_flux, nullptr);
ASSERT_EQ(lmp->atom->edpd_temp, nullptr);
ASSERT_EQ(lmp->atom->edpd_flux, nullptr);
ASSERT_EQ(lmp->atom->edpd_cv, nullptr);
ASSERT_EQ(lmp->atom->length, nullptr);
ASSERT_EQ(lmp->atom->buckling, nullptr);
ASSERT_EQ(lmp->atom->bond_nt, nullptr);
ASSERT_EQ(lmp->atom->contact_radius, nullptr);
ASSERT_EQ(lmp->atom->smd_data_9, nullptr);
ASSERT_EQ(lmp->atom->smd_stress, nullptr);
ASSERT_EQ(lmp->atom->eff_plastic_strain, nullptr);
ASSERT_EQ(lmp->atom->eff_plastic_strain_rate, nullptr);
ASSERT_EQ(lmp->atom->damage, nullptr);
ASSERT_EQ(lmp->atom->rho, nullptr);
ASSERT_EQ(lmp->atom->drho, nullptr);
ASSERT_EQ(lmp->atom->esph, nullptr);
ASSERT_EQ(lmp->atom->desph, nullptr);
ASSERT_EQ(lmp->atom->cv, nullptr);
ASSERT_EQ(lmp->atom->vest, nullptr);
ASSERT_EQ(lmp->atom->nmolecule, 0);
ASSERT_EQ(lmp->atom->molecules, nullptr);
ASSERT_EQ(lmp->atom->nivector, 0);
ASSERT_EQ(lmp->atom->ndvector, 0);
ASSERT_EQ(lmp->atom->iname, nullptr);
ASSERT_EQ(lmp->atom->dname, nullptr);
ASSERT_EQ(lmp->atom->mass, nullptr);
ASSERT_EQ(lmp->atom->mass_setflag, nullptr);
ASSERT_EQ(lmp->atom->nextra_grow, 0);
ASSERT_EQ(lmp->atom->nextra_restart, 0);
ASSERT_EQ(lmp->atom->nextra_border, 0);
ASSERT_EQ(lmp->atom->nextra_grow_max, 0);
ASSERT_EQ(lmp->atom->nextra_restart_max, 0);
ASSERT_EQ(lmp->atom->nextra_border_max, 0);
ASSERT_EQ(lmp->atom->nextra_store, 0);
ASSERT_EQ(lmp->atom->extra_grow, nullptr);
ASSERT_EQ(lmp->atom->extra_restart, nullptr);
ASSERT_EQ(lmp->atom->extra_border, nullptr);
ASSERT_EQ(lmp->atom->extra, nullptr);
ASSERT_EQ(lmp->atom->sametag, nullptr);
ASSERT_EQ(lmp->atom->map_style, 0);
ASSERT_EQ(lmp->atom->map_user, 0);
ASSERT_EQ(lmp->atom->map_tag_max, -1);
if (!verbose) ::testing::internal::CaptureStdout();
lmp->input->one("atom_modify map hash");
@ -469,6 +299,7 @@ TEST_F(AtomStyleTest, atomic)
ASSERT_EQ(lmp->atom->map_user, 2);
ASSERT_EQ(lmp->atom->map_tag_max, 4);
if (!verbose) ::testing::internal::CaptureStdout();
lmp->input->one("pair_coeff * *");
lmp->input->one("write_data test_atom_styles.data nocoeff");
lmp->input->one("clear");
lmp->input->one("atom_style atomic");
@ -489,30 +320,30 @@ TEST_F(AtomStyleTest, atomic)
double **x = lmp->atom->x;
double **v = lmp->atom->v;
ASSERT_DOUBLE_EQ(x[0][0],-2.0);
ASSERT_DOUBLE_EQ(x[0][1],2.0);
ASSERT_DOUBLE_EQ(x[0][2],0.1);
ASSERT_DOUBLE_EQ(x[1][0],-2.0);
ASSERT_DOUBLE_EQ(x[1][1],-2.0);
ASSERT_DOUBLE_EQ(x[1][2],-0.1);
ASSERT_DOUBLE_EQ(x[2][0],2.0);
ASSERT_DOUBLE_EQ(x[2][1],2.0);
ASSERT_DOUBLE_EQ(x[2][2],-0.1);
ASSERT_DOUBLE_EQ(x[3][0],2.0);
ASSERT_DOUBLE_EQ(x[3][1],-2.0);
ASSERT_DOUBLE_EQ(x[3][2],0.1);
ASSERT_DOUBLE_EQ(v[0][0],0.0);
ASSERT_DOUBLE_EQ(v[0][1],0.0);
ASSERT_DOUBLE_EQ(v[0][2],0.0);
ASSERT_DOUBLE_EQ(v[1][0],0.0);
ASSERT_DOUBLE_EQ(v[1][1],0.0);
ASSERT_DOUBLE_EQ(v[1][2],0.0);
ASSERT_DOUBLE_EQ(v[2][0],0.0);
ASSERT_DOUBLE_EQ(v[2][1],0.0);
ASSERT_DOUBLE_EQ(v[2][2],0.0);
ASSERT_DOUBLE_EQ(v[3][0],0.0);
ASSERT_DOUBLE_EQ(v[3][1],0.0);
ASSERT_DOUBLE_EQ(v[3][2],0.0);
ASSERT_DOUBLE_EQ(x[0][0], -2.0);
ASSERT_DOUBLE_EQ(x[0][1], 2.0);
ASSERT_DOUBLE_EQ(x[0][2], 0.1);
ASSERT_DOUBLE_EQ(x[1][0], -2.0);
ASSERT_DOUBLE_EQ(x[1][1], -2.0);
ASSERT_DOUBLE_EQ(x[1][2], -0.1);
ASSERT_DOUBLE_EQ(x[2][0], 2.0);
ASSERT_DOUBLE_EQ(x[2][1], 2.0);
ASSERT_DOUBLE_EQ(x[2][2], -0.1);
ASSERT_DOUBLE_EQ(x[3][0], 2.0);
ASSERT_DOUBLE_EQ(x[3][1], -2.0);
ASSERT_DOUBLE_EQ(x[3][2], 0.1);
ASSERT_DOUBLE_EQ(v[0][0], 0.0);
ASSERT_DOUBLE_EQ(v[0][1], 0.0);
ASSERT_DOUBLE_EQ(v[0][2], 0.0);
ASSERT_DOUBLE_EQ(v[1][0], 0.0);
ASSERT_DOUBLE_EQ(v[1][1], 0.0);
ASSERT_DOUBLE_EQ(v[1][2], 0.0);
ASSERT_DOUBLE_EQ(v[2][0], 0.0);
ASSERT_DOUBLE_EQ(v[2][1], 0.0);
ASSERT_DOUBLE_EQ(v[2][2], 0.0);
ASSERT_DOUBLE_EQ(v[3][0], 0.0);
ASSERT_DOUBLE_EQ(v[3][1], 0.0);
ASSERT_DOUBLE_EQ(v[3][2], 0.0);
ASSERT_DOUBLE_EQ(lmp->atom->mass[1], 4.0);
ASSERT_DOUBLE_EQ(lmp->atom->mass[2], 2.4);
@ -521,6 +352,54 @@ TEST_F(AtomStyleTest, atomic)
ASSERT_EQ(lmp->atom->map_style, 1);
ASSERT_EQ(lmp->atom->map_user, 1);
ASSERT_EQ(lmp->atom->map_tag_max, 4);
ASSERT_EQ(lmp->atom->tag_consecutive(), 1);
if (!verbose) ::testing::internal::CaptureStdout();
lmp->input->one("pair_coeff * *");
lmp->input->one("group two id 2:4:2");
lmp->input->one("delete_atoms group two compress no");
lmp->input->one("write_restart test_atom_styles.restart");
lmp->input->one("clear");
lmp->input->one("read_restart test_atom_styles.restart");
if (!verbose) ::testing::internal::GetCapturedStdout();
ASSERT_THAT(std::string(lmp->atom->atom_style), Eq("atomic"));
ASSERT_NE(lmp->atom->avec, nullptr);
ASSERT_EQ(lmp->atom->natoms, 2);
ASSERT_EQ(lmp->atom->nlocal, 2);
ASSERT_EQ(lmp->atom->nghost, 0);
ASSERT_NE(lmp->atom->nmax, -1);
ASSERT_EQ(lmp->atom->tag_enable, 1);
ASSERT_EQ(lmp->atom->molecular, 0);
ASSERT_EQ(lmp->atom->ntypes, 2);
ASSERT_EQ(lmp->atom->tag_consecutive(), 0);
x = lmp->atom->x;
v = lmp->atom->v;
ASSERT_DOUBLE_EQ(x[0][0], -2.0);
ASSERT_DOUBLE_EQ(x[0][1], 2.0);
ASSERT_DOUBLE_EQ(x[0][2], 0.1);
ASSERT_DOUBLE_EQ(x[1][0], 2.0);
ASSERT_DOUBLE_EQ(x[1][1], 2.0);
ASSERT_DOUBLE_EQ(x[1][2], -0.1);
ASSERT_DOUBLE_EQ(v[0][0], 0.0);
ASSERT_DOUBLE_EQ(v[0][1], 0.0);
ASSERT_DOUBLE_EQ(v[0][2], 0.0);
ASSERT_DOUBLE_EQ(v[1][0], 0.0);
ASSERT_DOUBLE_EQ(v[1][1], 0.0);
ASSERT_DOUBLE_EQ(v[1][2], 0.0);
ASSERT_DOUBLE_EQ(lmp->atom->mass[1], 4.0);
ASSERT_DOUBLE_EQ(lmp->atom->mass[2], 2.4);
ASSERT_EQ(lmp->atom->mass_setflag[1], 1);
ASSERT_EQ(lmp->atom->mass_setflag[2], 1);
ASSERT_EQ(lmp->atom->map_style, 1);
ASSERT_EQ(lmp->atom->map_user, 1);
ASSERT_EQ(lmp->atom->map_tag_max, 3);
if (!verbose) ::testing::internal::CaptureStdout();
lmp->input->one("reset_ids");
if (!verbose) ::testing::internal::GetCapturedStdout();
ASSERT_EQ(lmp->atom->map_tag_max, 2);
ASSERT_EQ(lmp->atom->tag_consecutive(), 1);
}
TEST_F(AtomStyleTest, charge)