diff --git a/doc/src/compute_damage_atom.rst b/doc/src/compute_damage_atom.rst index cecce56255..c4ccaca196 100644 --- a/doc/src/compute_damage_atom.rst +++ b/doc/src/compute_damage_atom.rst @@ -32,12 +32,10 @@ The "damage" of a Peridynamics particles is based on the bond breakage between the particle and its neighbors. If all the bonds are broken the particle is considered to be fully damaged. -.. TODO the link below is broken - See the `PDLAMMPS user guide -`_ for a formal -definition of "damage" and more details about Peridynamics as it is -implemented in LAMMPS. +`_ for a +formal definition of "damage" and more details about Peridynamics as it +is implemented in LAMMPS. This command can be used with all the Peridynamic pair styles. diff --git a/doc/src/compute_dilatation_atom.rst b/doc/src/compute_dilatation_atom.rst index a1037c6358..5eed50ed20 100644 --- a/doc/src/compute_dilatation_atom.rst +++ b/doc/src/compute_dilatation_atom.rst @@ -31,15 +31,13 @@ for an overview of LAMMPS commands for Peridynamics modeling. For small deformation, dilatation of is the measure of the volumetric strain. -.. TODO the link below is broken - The dilatation :math:`\theta` for each peridynamic particle :math:`i` is calculated as a sum over its neighbors with unbroken bonds, where the -contribution of the :math:`ij` pair is a function of the change in bond length -(versus the initial length in the reference state), the volume -fraction of the particles and an influence function. See the -`PDLAMMPS user guide `_ for -a formal definition of dilatation. +contribution of the :math:`ij` pair is a function of the change in bond +length (versus the initial length in the reference state), the volume +fraction of the particles and an influence function. See the `PDLAMMPS +user guide `_ +for a formal definition of dilatation. This command can only be used with a subset of the Peridynamic :doc:`pair styles `: peri/lps, peri/ves and peri/eps. diff --git a/doc/src/pair_cs.rst b/doc/src/pair_cs.rst index c021107fcc..745b14867b 100644 --- a/doc/src/pair_cs.rst +++ b/doc/src/pair_cs.rst @@ -114,7 +114,7 @@ Description """"""""""" These pair styles are designed to be used with the adiabatic -core/shell model of :ref:`(Mitchell and Fincham) `. See +core/shell model of :ref:`(Mitchell and Fincham) `. See the :doc:`Howto coreshell ` page for an overview of the model as implemented in LAMMPS. @@ -196,7 +196,7 @@ none ---------- -.. _MitchellFincham2: +.. _MitchellFincham3: **(Mitchell and Fincham)** Mitchell, Fincham, J Phys Condensed Matter, 5, 1031-1038 (1993). diff --git a/doc/src/pair_meam.rst b/doc/src/pair_meam.rst index 8227938581..ae8b96a47d 100644 --- a/doc/src/pair_meam.rst +++ b/doc/src/pair_meam.rst @@ -423,12 +423,8 @@ none .. _Gullet: -**(Gullet)** Gullet, Wagner, Slepoy, SANDIA Report 2003-8782 (2003). -This report may be accessed on-line via `this link `_. - -.. TODO the following URL is not accessible - -.. _sandreport: http://infoserve.sandia.gov/sand_doc/2003/038782.pdf +**(Gullet)** Gullet, Wagner, Slepoy, SANDIA Report 2003-8782 (2003). DOI:10.2172/918395 +This report may be accessed on-line via `this link `_. .. _Lee: diff --git a/doc/src/pair_peri.rst b/doc/src/pair_peri.rst index 22661d99d6..7c78c960e3 100644 --- a/doc/src/pair_peri.rst +++ b/doc/src/pair_peri.rst @@ -51,8 +51,9 @@ Description """"""""""" The peridynamic pair styles implement material models that can be used -at the mesoscopic and macroscopic scales. See `this document `_ for an overview of LAMMPS commands -for Peridynamics modeling. +at the mesoscopic and macroscopic scales. See `this document +`_ for an overview of LAMMPS commands for +Peridynamics modeling. Style *peri/pmb* implements the Peridynamic bond-based prototype microelastic brittle (PMB) model. @@ -66,14 +67,12 @@ peridynamic viscoelastic solid (VES) model. Style *peri/eps* implements the Peridynamic state-based elastic-plastic solid (EPS) model. -.. TODO the following URL is not valid - The canonical papers on Peridynamics are :ref:`(Silling 2000) ` and :ref:`(Silling 2007) `. The implementation of Peridynamics in LAMMPS is described in :ref:`(Parks) `. Also see the `PDLAMMPS user guide -`_ for more details -about its implementation. +`_ for more +details about its implementation. The peridynamic VES and EPS models in PDLAMMPS were implemented by R. Rahman and J. T. Foster at University of Texas at San Antonio. The @@ -169,8 +168,9 @@ shift option. The :doc:`pair_modify ` table and tail options are not relevant for these pair styles. -These pair styles write their information to :doc:`binary restart files `, so pair_style and pair_coeff commands do not need -to be specified in an input script that reads a restart file. +These pair styles write their information to :doc:`binary restart files +`, so pair_style and pair_coeff commands do not need to be +specified in an input script that reads a restart file. These pair styles can only be used via the *pair* keyword of the :doc:`run_style respa ` command. They do not support the @@ -181,8 +181,9 @@ These pair styles can only be used via the *pair* keyword of the Restrictions """""""""""" -All of these styles are part of the PERI package. They are only -enabled if LAMMPS was built with that package. See the :doc:`Build package ` page for more info. +All of these styles are part of the PERI package. They are only enabled +if LAMMPS was built with that package. See the :doc:`Build package +` page for more info. Related commands """"""""""""""""