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Processed the ERROR line in the output, increased max_np to 4 when no reference log file exists

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This commit is contained in:
Trung Nguyen
2024-08-13 15:01:29 -05:00
parent 700a22b7cd
commit a69356a02f
1 changed files with 27 additions and 18 deletions
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45
tools/regression-tests/run_tests.py
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@ -122,6 +122,9 @@ def iterate(lmp_binary, input_folder, input_list, config, results, progress_file
using_markers = False
EPSILON = np.float64(config['epsilon'])
nugget = float(config['nugget'])
use_valgrind = False
if 'valgrind' in config['mpiexec']:
use_valgrind = True
# iterate over the input scripts
for input in input_list:
@ -211,10 +214,9 @@ def iterate(lmp_binary, input_folder, input_list, config, results, progress_file
print(str_t)
# check if a reference log file exists in the current folder: log.DDMMMYY.basename.g++.[nprocs]
#basename = input_test.replace('in.','')
# assuming that input file names start with "in."
# assuming that input file names start with "in." (except in.disp, in.disp2 and in.dos in phonon/)
basename = input_test[3:]
logfile_exist = False
ref_logfile_exist = False
# if there are multiple log files for different number of procs, pick the maximum number
cmd_str = "ls log.*"
@ -232,30 +234,35 @@ def iterate(lmp_binary, input_folder, input_list, config, results, progress_file
if fnmatch.fnmatch(file, pattern):
p = file.rsplit('.', 1)
if p[1].isnumeric():
if 'valgrind' in config['mpiexec']:
if use_valgrind == True:
if int(p[1]) == 1:
max_np = int(p[1])
logfile_exist = True
ref_logfile_exist = True
thermo_ref_file = file
break
else:
if max_np < int(p[1]):
if max_np <= int(p[1]):
max_np = int(p[1])
logfile_exist = True
ref_logfile_exist = True
thermo_ref_file = file
nprocs = max_np
# if there is no ref log file and not running with valgrind
if ref_logfile_exist == False and use_valgrind == False:
max_np = 4
# if the maximum number of procs is different from the value in the configuration file
# then override the setting for this input script
saved_nprocs = config['nprocs']
if max_np != int(config['nprocs']):
config['nprocs'] = str(max_np)
# store the value of nprocs
nprocs = int(config['nprocs'])
# if valgrind is used for mem check, the run command will be
# mpirun valgrind --leak-check=full --show-leak-kinds=all --track-origin=yes /path/to/lmp_binary -in in.txt
# mpirun -np 1 valgrind --leak-check=full --show-leak-kinds=all --track-origins=yes /path/to/lmp_binary -in in.txt
# so both mpiexec_numproc_flag and nprocs are empty
if 'valgrind' in config['mpiexec']:
if use_valgrind == True:
config['nprocs'] = ""
config['mpiexec_numproc_flag'] = ""
nprocs = 1
@ -269,20 +276,21 @@ def iterate(lmp_binary, input_folder, input_list, config, results, progress_file
config['nprocs'] = saved_nprocs
# check if the output contains ERROR
# there might not be a log.lammps generated at this point, or only log.lammps contains only the date line
if "ERROR" in output:
error_line = ""
for line in output:
for line in output.split('\n'):
if "ERROR" in line:
error_line = line
break
logger.info(f" The run terminated with {input_test} gives the following output:")
logger.info(f" {error_line}")
if "Unrecognized" in output:
result.status = "error, unrecognized command, package not installed"
result.status = f"error, unrecognized command, package not installed, {error_line}"
elif "Unknown" in output:
result.status = "error, unknown command, package not installed"
result.status = f"error, unknown command, package not installed, {error_line}"
else:
result.status = f"error, see output."
result.status = f"error, {error_line}."
logger.info(f" Output:")
logger.info(f" {output}")
@ -296,7 +304,7 @@ def iterate(lmp_binary, input_folder, input_list, config, results, progress_file
test_id = test_id + 1
continue
# if there is no ERROR in the output, then there is something irregular in the run
# if there is no ERROR in the output, but there is no Total wall time printed out
if "Total wall time" not in output:
logger.info(f" ERROR: no Total wall time in the output.\n")
logger.info(f"\n{input_test}:")
@ -308,6 +316,7 @@ def iterate(lmp_binary, input_folder, input_list, config, results, progress_file
test_id = test_id + 1
continue
# if there is no Step or no Loop printed out
if "Step" not in output or "Loop" not in output:
logger.info(f" ERROR: no Step nor Loop in the output.\n")
logger.info(f"\n{input_test}:")
@ -363,7 +372,7 @@ def iterate(lmp_binary, input_folder, input_list, config, results, progress_file
# At this point, the run completed without trivial errors, proceed with numerical checks
# check if there is a reference log file for this input
if logfile_exist:
if ref_logfile_exist:
# parse the thermo output in reference log file
thermo_ref = extract_data_to_yaml(thermo_ref_file)
if thermo_ref:
@ -547,7 +556,7 @@ def iterate(lmp_binary, input_folder, input_list, config, results, progress_file
# check if memleak detects from valgrind run (need to replace "mpirun" -> valgrind --leak-check=yes mpirun")
msg = "completed"
if 'valgrind' in config['mpiexec']:
if use_valgrind == True:
if "All heap blocks were freed" in error:
msg += ", no memory leak"
else: