git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@2687 f3b2605a-c512-4ea7-a41b-209d697bcdaa

doc/Manual.html

@@ -54,6 +54,21 @@ it gives quick access to documentation for all LAMMPS commands.
 <P><A HREF = "Manual.pdf">PDF file</A> of the entire manual, generated by
 <A HREF = "http://www.easysw.com/htmldoc">htmldoc</A>
 </P>
+<P>IMPORTANT NOTE: If you are reading these HTML doc pages on the LAMMPS
+WWW site, then they describe the most current, fully-patched version
+of LAMMPS, which has changed after the date listed above.  These
+additions are described on <A HREF = "http://lammps.sandia.gov/bug.html">this
+page</A>.  If you are reading these
+HTML doc pages from the doc directory of the tarball you downloaded,
+then they will describe that tarball, whether it was the original
+version for the date listed above, or an upgraded tarball including
+features up to the date you downloaded it, again as described on <A HREF = "http://lammps.sandia.gov/bug.html">this
+page</A>.  When the tarball unpacks, it
+will contain the date that corresponds to which version you
+downloaded.  The PDF file described above is not regenerated for every
+patch, so it always corresponds to the original version with the date
+listed above.
+</P>
 <OL><LI><A HREF = "Section_intro.html">Introduction</A> 
 
 <UL>  1.1 <A HREF = "Section_intro.html#1_1">What is LAMMPS</A> 

doc/Manual.txt

@@ -51,6 +51,21 @@ it gives quick access to documentation for all LAMMPS commands.
 "PDF file"_Manual.pdf of the entire manual, generated by
 "htmldoc"_http://www.easysw.com/htmldoc
 
+IMPORTANT NOTE: If you are reading these HTML doc pages on the LAMMPS
+WWW site, then they describe the most current, fully-patched version
+of LAMMPS, which has changed after the date listed above.  These
+additions are described on "this
+page"_http://lammps.sandia.gov/bug.html.  If you are reading these
+HTML doc pages from the doc directory of the tarball you downloaded,
+then they will describe that tarball, whether it was the original
+version for the date listed above, or an upgraded tarball including
+features up to the date you downloaded it, again as described on "this
+page"_http://lammps.sandia.gov/bug.html.  When the tarball unpacks, it
+will contain the date that corresponds to which version you
+downloaded.  The PDF file described above is not regenerated for every
+patch, so it always corresponds to the original version with the date
+listed above.
+
 "Introduction"_Section_intro.html :olb,l
   1.1 "What is LAMMPS"_1_1 :ulb,b
   1.2 "LAMMPS features"_1_2 :b

doc/fix_rigid.html

@@ -56,9 +56,18 @@ means that each timestep the total force and torque on each rigid body
 is computed and the coordinates and velocities of the atoms in each
 body are updated so that they move as a rigid body.  This can be
 useful for freezing one or more portions of a large biomolecule, or
-for simulating a system of colloidal particles.  See the Restrictions
+for simulating a system of colloidal particles.
-section if you simply want to hold a group of atoms motionless or have
+</P>
-them move with constant velocity.
+<P>IMPORTANT NOTE: This fix is overkill if you just want to hold group of
+atoms stationary of have them move with a constant velocity.  A
+simpler way to hold atoms stationary is to not include those atoms in
+your time integration fix.  E.g. use "fix 1 mobile nve" instead of
+"fix 1 all nve", where "mobile" is the group of atoms that you want to
+move.  You can move atoms with a constant velocity by assigning them
+an initial velocity (via the <A HREF = "velocity.html">velocity</A> command),
+setting the force on them to 0.0 (via the <A HREF = "fix_setforce.html">fix
+setforce</A> command), and integrating them as usual
+(e.g. via the <A HREF = "fix_nve.html">fix nve</A> command).
 </P>
 <P>IMPORTANT NOTE: This fix updates the positions and velocities of the
 rigid atoms with a constant-energy time integration, so you should not
@@ -195,17 +204,6 @@ boundary, the input data file must define the image flags for each
 atom correctly, so that LAMMPS can "unwrap" the atoms into a valid
 rigid body.
 </P>
-<P>This fix is overkill if you just want to hold group of atoms
-stationary of have them move with a constant velocity.  A simpler way
-to hold atoms stationary is to not include those atoms in your time
-integration fix.  E.g. use "fix 1 mobile nve" instead of "fix 1 all
-nve", where "mobile" is the group of atoms that you want to move.  You
-can move atoms with a constant velocity by assigning them an initial
-velocity (via the <A HREF = "velocity.html">velocity</A> command), setting the force
-on them to 0.0 (via the <A HREF = "fix_setforce.html">fix setforce</A> command), and
-integrating them as usual (e.g. via the <A HREF = "fix_nve.html">fix nve</A>
-command).
-</P>
 <P><B>Related commands:</B>
 </P>
 <P><A HREF = "delete_bonds.html">delete_bonds</A>, <A HREF = "neigh_modify.html">neigh_modify</A>

doc/fix_rigid.txt

@@ -47,9 +47,18 @@ means that each timestep the total force and torque on each rigid body
 is computed and the coordinates and velocities of the atoms in each
 body are updated so that they move as a rigid body.  This can be
 useful for freezing one or more portions of a large biomolecule, or
-for simulating a system of colloidal particles.  See the Restrictions
+for simulating a system of colloidal particles.
-section if you simply want to hold a group of atoms motionless or have
+
-them move with constant velocity.
+IMPORTANT NOTE: This fix is overkill if you just want to hold group of
+atoms stationary of have them move with a constant velocity.  A
+simpler way to hold atoms stationary is to not include those atoms in
+your time integration fix.  E.g. use "fix 1 mobile nve" instead of
+"fix 1 all nve", where "mobile" is the group of atoms that you want to
+move.  You can move atoms with a constant velocity by assigning them
+an initial velocity (via the "velocity"_velocity.html command),
+setting the force on them to 0.0 (via the "fix
+setforce"_fix_setforce.html command), and integrating them as usual
+(e.g. via the "fix nve"_fix_nve.html command).
 
 IMPORTANT NOTE: This fix updates the positions and velocities of the
 rigid atoms with a constant-energy time integration, so you should not
@@ -186,17 +195,6 @@ boundary, the input data file must define the image flags for each
 atom correctly, so that LAMMPS can "unwrap" the atoms into a valid
 rigid body.
 
-This fix is overkill if you just want to hold group of atoms
-stationary of have them move with a constant velocity.  A simpler way
-to hold atoms stationary is to not include those atoms in your time
-integration fix.  E.g. use "fix 1 mobile nve" instead of "fix 1 all
-nve", where "mobile" is the group of atoms that you want to move.  You
-can move atoms with a constant velocity by assigning them an initial
-velocity (via the "velocity"_velocity.html command), setting the force
-on them to 0.0 (via the "fix setforce"_fix_setforce.html command), and
-integrating them as usual (e.g. via the "fix nve"_fix_nve.html
-command).
-
 [Related commands:]
 
 "delete_bonds"_delete_bonds.html, "neigh_modify"_neigh_modify.html