diff --git a/doc/Section_python.html b/doc/Section_python.html index 07666e67fe..9a561cb74c 100644 --- a/doc/Section_python.html +++ b/doc/Section_python.html @@ -609,14 +609,14 @@ distribution. gui.py GUI go/stop/temperature-slider to control LAMMPS plot.py real-time temeperature plot with GnuPlot via Pizza.py viz_tool.py real-time viz via some viz package -vizplotgui_tool.py combination of viz.py and plot.py and gui.py +vizplotgui_tool.py combination of viz_tool.py and plot.py and gui.py

For the viz_tool.py and vizplotgui_tool.py commands, replace "tool" -with "gl" or "atomeye" or "pymol", depending on what visualization -package you have installed. We hope to add a VMD option soon. +with "gl" or "atomeye" or "pymol" or "vmd", depending on what +visualization package you have installed.

Note that for GL, you need to be able to run the Pizza.py GL tool, which is included in the pizza sub-directory. See the Pizza.py doc @@ -624,7 +624,7 @@ pages for more info:

-

Note that for AtomEye, you need version 3, and their is a line in the +

Note that for AtomEye, you need version 3, and there is a line in the scripts that specifies the path and name of the executable. See the AtomEye WWW pages here or here for more details:

@@ -652,6 +652,10 @@ http://sourceforge.net/scm/?type=svn&group_id=4546

The latter link is to the open-source version.

+

Note that for VMD, you need a fairly current version (1.8.7 works for +me) and there are some lines in the pizza/vmd.py script for 4 PIZZA +variables that have to match the VMD installation on your system. +


See the python/README file for instructions on how to run them and the @@ -666,4 +670,6 @@ different visualization package options. Click to see larger images: + + diff --git a/doc/Section_python.txt b/doc/Section_python.txt index 37d0121300..edb3141370 100644 --- a/doc/Section_python.txt +++ b/doc/Section_python.txt @@ -602,13 +602,13 @@ simple.py, mimic operation of couple/simple/simple.cpp in Python, gui.py, GUI go/stop/temperature-slider to control LAMMPS, plot.py, real-time temeperature plot with GnuPlot via Pizza.py, viz_tool.py, real-time viz via some viz package, -vizplotgui_tool.py, combination of viz.py and plot.py and gui.py :tb(c=2) +vizplotgui_tool.py, combination of viz_tool.py and plot.py and gui.py :tb(c=2) :line For the viz_tool.py and vizplotgui_tool.py commands, replace "tool" -with "gl" or "atomeye" or "pymol", depending on what visualization -package you have installed. We hope to add a VMD option soon. +with "gl" or "atomeye" or "pymol" or "vmd", depending on what +visualization package you have installed. Note that for GL, you need to be able to run the Pizza.py GL tool, which is included in the pizza sub-directory. See the "Pizza.py doc @@ -616,7 +616,7 @@ pages"_pizza for more info: :link(pizza,http://www.sandia.gov/~sjplimp/pizza.html) -Note that for AtomEye, you need version 3, and their is a line in the +Note that for AtomEye, you need version 3, and there is a line in the scripts that specifies the path and name of the executable. See the AtomEye WWW pages "here"_atomeye or "here"_atomeye3 for more details: @@ -642,6 +642,10 @@ http://sourceforge.net/scm/?type=svn&group_id=4546 :pre The latter link is to the open-source version. +Note that for VMD, you need a fairly current version (1.8.7 works for +me) and there are some lines in the pizza/vmd.py script for 4 PIZZA +variables that have to match the VMD installation on your system. + :line See the python/README file for instructions on how to run them and the @@ -653,4 +657,4 @@ different visualization package options. Click to see larger images: :image(JPG/screenshot_gl_small.jpg,JPG/screenshot_gl.jpg) :image(JPG/screenshot_atomeye_small.jpg,JPG/screenshot_atomeye.jpg) :image(JPG/screenshot_pymol_small.jpg,JPG/screenshot_pymol.jpg) - +:image(JPG/screenshot_vmd_small.jpg,JPG/screenshot_vmd.jpg)