git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6809 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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sjplimp
2011-08-25 17:01:01 +00:00
parent a3add0b021
commit a8cf1de735
338 changed files with 1081 additions and 1063 deletions

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@ -682,9 +682,9 @@ build will likely fail.
<H4><A NAME = "start_4"></A>2.4 Building LAMMPS as a library
</H4>
<P>LAMMPS itself can be built as a library, which can then be called from
another application or a scripting language. See <A HREF = "Section_howto.html#4_10">this
section</A> for more info on coupling LAMMPS to
other codes. Building LAMMPS as a library is done by typing
another application or a scripting language. See <A HREF = "Section_howto.html#howto_10">this
section</A> for more info on coupling LAMMPS
to other codes. Building LAMMPS as a library is done by typing
</P>
<PRE>make makelib
make -f Makefile.lib foo
@ -710,15 +710,15 @@ src/library.cpp and src/library.h.
<P>See the sample codes couple/simple/simple.cpp and simple.c as examples
of C++ and C codes that invoke LAMMPS thru its library interface.
There are other examples as well in the couple directory which are
discussed in <A HREF = "Section_howto.html#4_10">this section</A> of the manual.
discussed in <A HREF = "Section_howto.html#howto_10">this section</A> of the manual.
See <A HREF = "Section_python.html">this section</A> of the manual for a description
of the Python wrapper provided with LAMMPS that operates through the
LAMMPS library interface.
</P>
<P>The files src/library.cpp and library.h contain the C-style interface
to LAMMPS. See <A HREF = "Section_howto.html#4_19">this section</A> of the manual
for a description of the interface and how to extend it for your
needs.
to LAMMPS. See <A HREF = "Section_howto.html#howto_19">this section</A> of the
manual for a description of the interface and how to extend it for
your needs.
</P>
<HR>
@ -925,13 +925,13 @@ processors.
</P>
<P>Note that with MPI installed on a machine (e.g. your desktop), you can
run on more (virtual) processors than you have physical processors.
This can be useful for running <A HREF = "Section_howto.html#4_5">multi-replica
This can be useful for running <A HREF = "Section_howto.html#howto_5">multi-replica
simulations</A>, on one or a few processors.
</P>
<P>The input script specifies what simulation is run on which partition;
see the <A HREF = "variable.html">variable</A> and <A HREF = "next.html">next</A> commands. This
<A HREF = "Section_howto.html#4_4">howto section</A> gives examples of how to use
these commands in this way. Simulations running on different
<A HREF = "Section_howto.html#howto_4">howto section</A> gives examples of how to
use these commands in this way. Simulations running on different
partitions can also communicate with each other; see the
<A HREF = "temper.html">temper</A> command.
</P>
@ -1016,9 +1016,9 @@ value2 ..." at the beginning of the input script. Defining an index
variable as a command-line argument overrides any setting for the same
index variable in the input script, since index variables cannot be
re-defined. See the <A HREF = "variable.html">variable</A> command for more info on
defining index and other kinds of variables and <A HREF = "Section_commands.html#3_2">this
section</A> for more info on using variables in
input scripts.
defining index and other kinds of variables and <A HREF = "Section_commands.html#cmd_2">this
section</A> for more info on using variables
in input scripts.
</P>
<HR>