ICODE-ADC/lammps
4
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6809 f3b2605a-c512-4ea7-a41b-209d697bcdaa

Browse Source
This commit is contained in:
sjplimp
2011-08-25 17:01:01 +00:00
parent a3add0b021
commit a8cf1de735
338 changed files with 1081 additions and 1063 deletions
Download Patch File Download Diff File Expand all files Collapse all files

14
doc/fix_ave_spatial.html
View File

@ -78,7 +78,7 @@ fix 1 flow ave/spatial 100 5 1000 z lower 1.0 y 0.0 2.5 density/mass ave running
<P>Use one or more per-atom vectors as inputs every few timesteps, bin
their values spatially into 1d, 2d, or 3d bins based on current atom
coordinates, and average the bin values over longer timescales. The
resulting bin averages can be used by other <A HREF = "Section_howto.html#4_15">output
resulting bin averages can be used by other <A HREF = "Section_howto.html#howto_15">output
commands</A> such as <A HREF = "thermo_style.html">thermo_style
custom</A>, and can also be written to a file.
</P>
@ -163,11 +163,11 @@ counted in the first/last bin in that dimension.
<P>For orthogonal simulation boxes, the bins are also layers, pencils, or
boxes aligned with the xyz coordinate axes. For triclinic
(non-orthogonal) simulation boxes, the bins are so that they are
parallel to the tilted faces of the simulation box. See <A HREF = "Section_howto.html#4_12">this
section</A> of the manual for a discussion of the
geometry of triclinic boxes in LAMMPS. As described there, a tilted
simulation box has edge vectors a,b,c. In that nomenclature, bins in
the x dimension have faces with normals in the "b" cross "c"
parallel to the tilted faces of the simulation box. See <A HREF = "Section_howto.html#howto_12">this
section</A> of the manual for a discussion of
the geometry of triclinic boxes in LAMMPS. As described there, a
tilted simulation box has edge vectors a,b,c. In that nomenclature,
bins in the x dimension have faces with normals in the "b" cross "c"
direction. Bins in y have faces normal to the "a" cross "c"
direction. And bins in z have faces normal to the "a" cross "b"
direction. Note that in order to define the size and position of
@ -321,7 +321,7 @@ files</A>. None of the <A HREF = "fix_modify.html">fix_modify</A> options
are relevant to this fix.
</P>
<P>This fix computes a global array of values which can be accessed by
various <A HREF = "Section_howto.html#4_15">output commands</A>. The values can
various <A HREF = "Section_howto.html#howto_15">output commands</A>. The values can
only be accessed on timesteps that are multiples of <I>Nfreq</I> since that
is when averaging is performed. The global array has # of rows =
Nbins and # of columns = Ndim+1+Nvalues, where Ndim = 1,2,3 for