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Unify dump atom/gz and atom/zstd tests

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This commit is contained in:
Richard Berger
2021-03-10 15:48:20 -05:00
parent a548ea3bca
commit aa625eaf65
3 changed files with 154 additions and 392 deletions
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17
unittest/formats/CMakeLists.txt
View File

@ -40,11 +40,11 @@ set_tests_properties(DumpAtom PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS
if(PKG_COMPRESS) if(PKG_COMPRESS)
find_program(GZIP_BINARY NAMES gzip REQUIRED) find_program(GZIP_BINARY NAMES gzip REQUIRED)
add_executable(test_dump_atom_gz test_dump_atom_gz.cpp) add_executable(test_dump_atom_compressed test_dump_atom_compressed.cpp)
target_link_libraries(test_dump_atom_gz PRIVATE lammps GTest::GMock GTest::GTest) target_link_libraries(test_dump_atom_compressed PRIVATE lammps GTest::GMock GTest::GTest)
add_test(NAME DumpAtomGZ COMMAND test_dump_atom_gz WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpAtomGZ PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR}") add_test(NAME DumpAtomGZ COMMAND test_dump_atom_compressed gz WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpAtomGZ PROPERTIES ENVIRONMENT "GZIP_BINARY=${GZIP_BINARY}") set_tests_properties(DumpAtomGZ PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR};COMPRESS_BINARY=${GZIP_BINARY}")
add_executable(test_dump_custom_gz test_dump_custom_gz.cpp) add_executable(test_dump_custom_gz test_dump_custom_gz.cpp)
target_link_libraries(test_dump_custom_gz PRIVATE lammps GTest::GMock GTest::GTest) target_link_libraries(test_dump_custom_gz PRIVATE lammps GTest::GMock GTest::GTest)
@ -75,11 +75,8 @@ if(PKG_COMPRESS)
find_program(ZSTD_BINARY NAMES zstd) find_program(ZSTD_BINARY NAMES zstd)
if(Zstd_FOUND AND ZSTD_BINARY) if(Zstd_FOUND AND ZSTD_BINARY)
add_executable(test_dump_atom_zstd test_dump_atom_zstd.cpp) add_test(NAME DumpAtomZstd COMMAND test_dump_atom_compressed zstd WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
target_link_libraries(test_dump_atom_zstd PRIVATE lammps GTest::GMock GTest::GTest) set_tests_properties(DumpAtomZstd PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR};COMPRESS_BINARY=${ZSTD_BINARY}")
add_test(NAME DumpAtomZstd COMMAND test_dump_atom_zstd WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpAtomZstd PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR}")
set_tests_properties(DumpAtomZstd PROPERTIES ENVIRONMENT "ZSTD_BINARY=${ZSTD_BINARY}")
add_executable(test_dump_custom_zstd test_dump_custom_zstd.cpp) add_executable(test_dump_custom_zstd test_dump_custom_zstd.cpp)
target_link_libraries(test_dump_custom_zstd PRIVATE lammps GTest::GMock GTest::GTest) target_link_libraries(test_dump_custom_zstd PRIVATE lammps GTest::GMock GTest::GTest)

245
unittest/formats/test_dump_atom_gz.cpp → unittest/formats/test_dump_atom_compressed.cpp
View File

@ -21,14 +21,36 @@
#include <string> #include <string>
char *GZIP_BINARY = nullptr; const char * COMPRESS_SUFFIX = nullptr;
const char * COMPRESS_EXTENSION = nullptr;
char * COMPRESS_BINARY = nullptr;
using ::testing::Eq; using ::testing::Eq;
class DumpAtomGZTest : public MeltTest { class DumpAtomCompressTest : public MeltTest {
protected:
std::string dump_style = "atom"; std::string dump_style = "atom";
std::string compression_style = "";
public: public:
void SetUp() override
{
MeltTest::SetUp();
compression_style = fmt::format("{}/{}", dump_style, COMPRESS_SUFFIX);
}
std::string text_dump_filename(std::string ident) {
return fmt::format("dump_{}_text_{}", COMPRESS_SUFFIX, ident);
}
std::string compressed_dump_filename(std::string ident) {
return fmt::format("dump_{}_compressed_{}.{}", COMPRESS_SUFFIX, ident, COMPRESS_EXTENSION);
}
std::string converted_dump_filename(std::string ident) {
return fmt::format("dump_{}_compressed_{}", COMPRESS_SUFFIX, ident);
}
void enable_triclinic() void enable_triclinic()
{ {
if (!verbose) ::testing::internal::CaptureStdout(); if (!verbose) ::testing::internal::CaptureStdout();
@ -50,15 +72,13 @@ public:
} }
void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file, void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file,
std::string compression_style,
std::string dump_modify_options, int ntimesteps) std::string dump_modify_options, int ntimesteps)
{ {
generate_text_and_compressed_dump(text_file, compressed_file, compression_style, generate_text_and_compressed_dump(text_file, compressed_file,
dump_modify_options, dump_modify_options, ntimesteps); dump_modify_options, dump_modify_options, ntimesteps);
} }
void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file, void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file,
std::string compression_style,
std::string text_options, std::string compressed_options, int ntimesteps) std::string text_options, std::string compressed_options, int ntimesteps)
{ {
if (!verbose) ::testing::internal::CaptureStdout(); if (!verbose) ::testing::internal::CaptureStdout();
@ -82,7 +102,7 @@ public:
if (!verbose) ::testing::internal::CaptureStdout(); if (!verbose) ::testing::internal::CaptureStdout();
std::string converted_file = compressed_file.substr(0, compressed_file.find_last_of('.')); std::string converted_file = compressed_file.substr(0, compressed_file.find_last_of('.'));
std::string cmdline = std::string cmdline =
fmt::format("{} -d -c {} > {}", GZIP_BINARY, compressed_file, converted_file); fmt::format("{} -d -c {} > {}", COMPRESS_BINARY, compressed_file, converted_file);
system(cmdline.c_str()); system(cmdline.c_str());
if (!verbose) ::testing::internal::GetCapturedStdout(); if (!verbose) ::testing::internal::GetCapturedStdout();
return converted_file; return converted_file;
@ -90,17 +110,17 @@ public:
}; };
//------------------------------------------------------------------------------------------------- //-------------------------------------------------------------------------------------------------
// GZ compressed files // compressed files
//------------------------------------------------------------------------------------------------- //-------------------------------------------------------------------------------------------------
TEST_F(DumpAtomGZTest, compressed_run0) TEST_F(DumpAtomCompressTest, compressed_run0)
{ {
if (!GZIP_BINARY) GTEST_SKIP(); if (!COMPRESS_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_run0.melt"; auto text_file = text_dump_filename("run0.melt");
auto compressed_file = "dump_gz_compressed_run0.melt.gz"; auto compressed_file = compressed_dump_filename("run0.melt");
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "", 0); generate_text_and_compressed_dump(text_file, compressed_file, "", 0);
TearDown(); TearDown();
@ -109,7 +129,7 @@ TEST_F(DumpAtomGZTest, compressed_run0)
auto converted_file = convert_compressed_to_text(compressed_file); auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_THAT(converted_file, Eq("dump_gz_compressed_run0.melt")); ASSERT_THAT(converted_file, Eq(converted_dump_filename("run0.melt")));
ASSERT_FILE_EXISTS(converted_file); ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file); ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file); delete_file(text_file);
@ -117,31 +137,29 @@ TEST_F(DumpAtomGZTest, compressed_run0)
delete_file(converted_file); delete_file(converted_file);
} }
TEST_F(DumpAtomGZTest, compressed_multi_file_run1) TEST_F(DumpAtomCompressTest, compressed_multi_file_run1)
{ {
if (!GZIP_BINARY) GTEST_SKIP(); if (!COMPRESS_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_multi_file_run1_*.melt"; auto base_name = "multi_file_run1_*.melt";
auto compressed_file = "dump_gz_compressed_multi_file_run1_*.melt.gz"; auto base_name_0 = "multi_file_run1_0.melt";
auto text_file_0 = "dump_gz_text_multi_file_run1_0.melt"; auto base_name_1 = "multi_file_run1_1.melt";
auto text_file_1 = "dump_gz_text_multi_file_run1_1.melt"; auto text_file = text_dump_filename(base_name);
auto compressed_file_0 = "dump_gz_compressed_multi_file_run1_0.melt.gz"; auto text_file_0 = text_dump_filename(base_name_0);
auto compressed_file_1 = "dump_gz_compressed_multi_file_run1_1.melt.gz"; auto text_file_1 = text_dump_filename(base_name_1);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "", 1); generate_text_and_compressed_dump(text_file, compressed_file, "", 1);
TearDown(); TearDown();
ASSERT_FILE_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(text_file_1);
ASSERT_FILE_EXISTS(compressed_file_0);
ASSERT_FILE_EXISTS(compressed_file_1);
auto converted_file_0 = convert_compressed_to_text(compressed_file_0); auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1); auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
ASSERT_THAT(converted_file_0, Eq("dump_gz_compressed_multi_file_run1_0.melt")); ASSERT_THAT(converted_file_0, Eq(converted_dump_filename(base_name_0)));
ASSERT_THAT(converted_file_1, Eq("dump_gz_compressed_multi_file_run1_1.melt")); ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_FILE_EXISTS(converted_file_0); ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EXISTS(converted_file_1); ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0); ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
@ -155,18 +173,21 @@ TEST_F(DumpAtomGZTest, compressed_multi_file_run1)
delete_file(converted_file_1); delete_file(converted_file_1);
} }
TEST_F(DumpAtomGZTest, compressed_multi_file_with_pad_run1) TEST_F(DumpAtomCompressTest, compressed_multi_file_with_pad_run1)
{ {
if (!GZIP_BINARY) GTEST_SKIP(); if (!COMPRESS_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_multi_file_pad_run1_*.melt"; auto base_name = "multi_file_pad_run1_*.melt";
auto compressed_file = "dump_gz_compressed_multi_file_pad_run1_*.melt.gz"; auto base_name_0 = "multi_file_pad_run1_000.melt";
auto text_file_0 = "dump_gz_text_multi_file_pad_run1_000.melt"; auto base_name_1 = "multi_file_pad_run1_001.melt";
auto text_file_1 = "dump_gz_text_multi_file_pad_run1_001.melt"; auto text_file = text_dump_filename(base_name);
auto compressed_file_0 = "dump_gz_compressed_multi_file_pad_run1_000.melt.gz"; auto text_file_0 = text_dump_filename(base_name_0);
auto compressed_file_1 = "dump_gz_compressed_multi_file_pad_run1_001.melt.gz"; auto text_file_1 = text_dump_filename(base_name_1);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "pad 3", 1); generate_text_and_compressed_dump(text_file, compressed_file, "pad 3", 1);
TearDown(); TearDown();
@ -178,8 +199,8 @@ TEST_F(DumpAtomGZTest, compressed_multi_file_with_pad_run1)
auto converted_file_0 = convert_compressed_to_text(compressed_file_0); auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1); auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
ASSERT_THAT(converted_file_0, Eq("dump_gz_compressed_multi_file_pad_run1_000.melt")); ASSERT_THAT(converted_file_0, Eq(converted_dump_filename(base_name_0)));
ASSERT_THAT(converted_file_1, Eq("dump_gz_compressed_multi_file_pad_run1_001.melt")); ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_FILE_EXISTS(converted_file_0); ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EXISTS(converted_file_1); ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0); ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
@ -193,20 +214,24 @@ TEST_F(DumpAtomGZTest, compressed_multi_file_with_pad_run1)
delete_file(converted_file_1); delete_file(converted_file_1);
} }
TEST_F(DumpAtomGZTest, compressed_multi_file_with_maxfiles_run1) TEST_F(DumpAtomCompressTest, compressed_multi_file_with_maxfiles_run1)
{ {
if (!GZIP_BINARY) GTEST_SKIP(); if (!COMPRESS_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_multi_file_run1_*.melt"; auto base_name = "multi_file_maxfiles_run1_*.melt";
auto compressed_file = "dump_gz_compressed_multi_file_run1_*.melt.gz"; auto base_name_0 = "multi_file_maxfiles_run1_0.melt";
auto text_file_0 = "dump_gz_text_multi_file_run1_0.melt"; auto base_name_1 = "multi_file_maxfiles_run1_1.melt";
auto text_file_1 = "dump_gz_text_multi_file_run1_1.melt"; auto base_name_2 = "multi_file_maxfiles_run1_2.melt";
auto text_file_2 = "dump_gz_text_multi_file_run1_2.melt"; auto text_file = text_dump_filename(base_name);
auto compressed_file_0 = "dump_gz_compressed_multi_file_run1_0.melt.gz"; auto text_file_0 = text_dump_filename(base_name_0);
auto compressed_file_1 = "dump_gz_compressed_multi_file_run1_1.melt.gz"; auto text_file_1 = text_dump_filename(base_name_1);
auto compressed_file_2 = "dump_gz_compressed_multi_file_run1_2.melt.gz"; auto text_file_2 = text_dump_filename(base_name_2);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
auto compressed_file_2 = compressed_dump_filename(base_name_2);
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "maxfiles 2", 2); generate_text_and_compressed_dump(text_file, compressed_file, "maxfiles 2", 2);
TearDown(); TearDown();
@ -220,8 +245,8 @@ TEST_F(DumpAtomGZTest, compressed_multi_file_with_maxfiles_run1)
auto converted_file_1 = convert_compressed_to_text(compressed_file_1); auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
auto converted_file_2 = convert_compressed_to_text(compressed_file_2); auto converted_file_2 = convert_compressed_to_text(compressed_file_2);
ASSERT_THAT(converted_file_1, Eq("dump_gz_compressed_multi_file_run1_1.melt")); ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_THAT(converted_file_2, Eq("dump_gz_compressed_multi_file_run1_2.melt")); ASSERT_THAT(converted_file_2, Eq(converted_dump_filename(base_name_2)));
ASSERT_FILE_EXISTS(converted_file_1); ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EXISTS(converted_file_2); ASSERT_FILE_EXISTS(converted_file_2);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1); ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
@ -235,14 +260,15 @@ TEST_F(DumpAtomGZTest, compressed_multi_file_with_maxfiles_run1)
delete_file(converted_file_2); delete_file(converted_file_2);
} }
TEST_F(DumpAtomGZTest, compressed_with_units_run0) TEST_F(DumpAtomCompressTest, compressed_with_units_run0)
{ {
if (!GZIP_BINARY) GTEST_SKIP(); if (!COMPRESS_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_with_units_run0.melt"; auto base_name = "with_units_run0.melt";
auto compressed_file = "dump_gz_compressed_with_units_run0.melt.gz"; auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "scale no units yes", generate_text_and_compressed_dump(text_file, compressed_file, "scale no units yes",
0); 0);
TearDown(); TearDown();
@ -259,15 +285,15 @@ TEST_F(DumpAtomGZTest, compressed_with_units_run0)
delete_file(converted_file); delete_file(converted_file);
} }
TEST_F(DumpAtomGZTest, compressed_with_time_run0) TEST_F(DumpAtomCompressTest, compressed_with_time_run0)
{ {
if (!GZIP_BINARY) GTEST_SKIP(); if (!COMPRESS_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_with_time_run0.melt"; auto base_name = "with_time_run0.melt";
auto compressed_file = "dump_gz_compressed_with_time_run0.melt.gz"; auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "scale no time yes", generate_text_and_compressed_dump(text_file, compressed_file, "scale no time yes", 0);
0);
TearDown(); TearDown();
@ -283,15 +309,16 @@ TEST_F(DumpAtomGZTest, compressed_with_time_run0)
delete_file(converted_file); delete_file(converted_file);
} }
TEST_F(DumpAtomGZTest, compressed_triclinic_run0) TEST_F(DumpAtomCompressTest, compressed_triclinic_run0)
{ {
if (!GZIP_BINARY) GTEST_SKIP(); if (!COMPRESS_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_tri_run0.melt"; auto base_name = "tri_run0.melt";
auto compressed_file = "dump_gz_compressed_tri_run0.melt.gz"; auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
enable_triclinic(); enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "", 0); generate_text_and_compressed_dump(text_file, compressed_file, "", 0);
TearDown(); TearDown();
@ -307,16 +334,16 @@ TEST_F(DumpAtomGZTest, compressed_triclinic_run0)
delete_file(converted_file); delete_file(converted_file);
} }
TEST_F(DumpAtomGZTest, compressed_triclinic_with_units_run0) TEST_F(DumpAtomCompressTest, compressed_triclinic_with_units_run0)
{ {
if (!GZIP_BINARY) GTEST_SKIP(); if (!COMPRESS_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_tri_with_units_run0.melt"; auto base_name = "tri_with_units_run0.melt";
auto compressed_file = "dump_gz_compressed_tri_with_units_run0.melt.gz"; auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
enable_triclinic(); enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "scale no units yes", generate_text_and_compressed_dump(text_file, compressed_file, "scale no units yes", 0);
0);
TearDown(); TearDown();
@ -332,16 +359,16 @@ TEST_F(DumpAtomGZTest, compressed_triclinic_with_units_run0)
delete_file(converted_file); delete_file(converted_file);
} }
TEST_F(DumpAtomGZTest, compressed_triclinic_with_time_run0) TEST_F(DumpAtomCompressTest, compressed_triclinic_with_time_run0)
{ {
if (!GZIP_BINARY) GTEST_SKIP(); if (!COMPRESS_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_tri_with_time_run0.melt"; auto base_name = "tri_with_time_run0.melt";
auto compressed_file = "dump_gz_compressed_tri_with_time_run0.melt.gz"; auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
enable_triclinic(); enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "scale no time yes", generate_text_and_compressed_dump(text_file, compressed_file, "scale no time yes", 0);
0);
TearDown(); TearDown();
@ -357,15 +384,16 @@ TEST_F(DumpAtomGZTest, compressed_triclinic_with_time_run0)
delete_file(converted_file); delete_file(converted_file);
} }
TEST_F(DumpAtomGZTest, compressed_triclinic_with_image_run0) TEST_F(DumpAtomCompressTest, compressed_triclinic_with_image_run0)
{ {
if (!GZIP_BINARY) GTEST_SKIP(); if (!COMPRESS_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_tri_with_image_run0.melt"; auto base_name = "tri_with_image_run0.melt";
auto compressed_file = "dump_gz_compressed_tri_with_image_run0.melt.gz"; auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
enable_triclinic(); enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "image yes", 0); generate_text_and_compressed_dump(text_file, compressed_file, "image yes", 0);
TearDown(); TearDown();
@ -381,32 +409,37 @@ TEST_F(DumpAtomGZTest, compressed_triclinic_with_image_run0)
delete_file(converted_file); delete_file(converted_file);
} }
TEST_F(DumpAtomGZTest, compressed_modify_bad_param) TEST_F(DumpAtomCompressTest, compressed_modify_bad_param)
{ {
command("dump id1 all atom/gz 1 dump_gz_text_modify_bad_param_run0_*.melt.gz"); if (compression_style != "atom/gz") GTEST_SKIP();
command(fmt::format("dump id1 all {} 1 {}", compression_style, compressed_dump_filename("modify_bad_param_run0_*.melt")));
TEST_FAILURE(".*ERROR: Illegal dump_modify command: compression level must in the range of.*", TEST_FAILURE(".*ERROR: Illegal dump_modify command: compression level must in the range of.*",
command("dump_modify id1 compression_level 12"); command("dump_modify id1 compression_level 12");
); );
} }
TEST_F(DumpAtomGZTest, compressed_modify_multi_bad_param) TEST_F(DumpAtomCompressTest, compressed_modify_multi_bad_param)
{ {
command("dump id1 all atom/gz 1 dump_gz_text_modify_bad_param_run0_*.melt.gz"); if (compression_style != "atom/gz") GTEST_SKIP();
command(fmt::format("dump id1 all {} 1 {}", compression_style, compressed_dump_filename("modify_multi_bad_param_run0_*.melt")));
TEST_FAILURE(".*ERROR: Illegal dump_modify command: compression level must in the range of.*", TEST_FAILURE(".*ERROR: Illegal dump_modify command: compression level must in the range of.*",
command("dump_modify id1 pad 3 compression_level 12"); command("dump_modify id1 pad 3 compression_level 12");
); );
} }
TEST_F(DumpAtomGZTest, compressed_modify_clevel_run0) TEST_F(DumpAtomCompressTest, compressed_modify_clevel_run0)
{ {
if (!GZIP_BINARY) GTEST_SKIP(); if (!COMPRESS_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_modify_clevel_run0.melt"; auto base_name = "modify_clevel_run0.melt";
auto compressed_file = "dump_gz_compressed_modify_clevel_run0.melt.gz"; auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "", "compression_level 3", 0); generate_text_and_compressed_dump(text_file, compressed_file, "", "compression_level 3", 0);
TearDown(); TearDown();
@ -415,7 +448,7 @@ TEST_F(DumpAtomGZTest, compressed_modify_clevel_run0)
auto converted_file = convert_compressed_to_text(compressed_file); auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_THAT(converted_file, Eq("dump_gz_compressed_modify_clevel_run0.melt")); ASSERT_THAT(converted_file, Eq(converted_dump_filename(base_name)));
ASSERT_FILE_EXISTS(converted_file); ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file); ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file); delete_file(text_file);
@ -428,6 +461,24 @@ int main(int argc, char **argv)
MPI_Init(&argc, &argv); MPI_Init(&argc, &argv);
::testing::InitGoogleMock(&argc, argv); ::testing::InitGoogleMock(&argc, argv);
if (argc < 2) {
std::cerr << "usage: " << argv[0] << " (gz|zstd)\n\n" << std::endl;
return 1;
}
if(strcmp(argv[1], "gz") == 0) {
COMPRESS_SUFFIX = "gz";
COMPRESS_EXTENSION = "gz";
} else if(strcmp(argv[1], "zstd") == 0) {
COMPRESS_SUFFIX = "zstd";
COMPRESS_EXTENSION = "zst";
} else {
std::cerr << "usage: " << argv[0] << " (gz|zstd)\n\n" << std::endl;
return 1;
}
COMPRESS_BINARY = getenv("COMPRESS_BINARY");
// handle arguments passed via environment variable // handle arguments passed via environment variable
if (const char *var = getenv("TEST_ARGS")) { if (const char *var = getenv("TEST_ARGS")) {
std::vector<std::string> env = utils::split_words(var); std::vector<std::string> env = utils::split_words(var);
@ -438,8 +489,6 @@ int main(int argc, char **argv)
} }
} }
GZIP_BINARY = getenv("GZIP_BINARY");
if ((argc > 1) && (strcmp(argv[1], "-v") == 0)) verbose = true; if ((argc > 1) && (strcmp(argv[1], "-v") == 0)) verbose = true;
int rv = RUN_ALL_TESTS(); int rv = RUN_ALL_TESTS();

284
unittest/formats/test_dump_atom_zstd.cpp
View File

@ -1,284 +0,0 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/core.h"
#include "../testing/systems/melt.h"
#include "../testing/utils.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
#include <string>
char *ZSTD_BINARY = nullptr;
using ::testing::Eq;
class DumpAtomZSTDTest : public MeltTest {
std::string dump_style = "atom";
public:
void enable_triclinic()
{
if (!verbose) ::testing::internal::CaptureStdout();
command("change_box all triclinic");
if (!verbose) ::testing::internal::GetCapturedStdout();
}
void generate_dump(std::string dump_file, std::string dump_modify_options, int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id all {} 1 {}", dump_style, dump_file));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file,
std::string compression_style,
std::string dump_modify_options, int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id0 all {} 1 {}", dump_style, text_file));
command(fmt::format("dump id1 all {} 1 {}", compression_style, compressed_file));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id0 {}", dump_modify_options));
command(fmt::format("dump_modify id1 {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
std::string convert_compressed_to_text(std::string compressed_file)
{
if (!verbose) ::testing::internal::CaptureStdout();
std::string converted_file = compressed_file.substr(0, compressed_file.find_last_of('.'));
std::string cmdline =
fmt::format("{} -d -c {} > {}", ZSTD_BINARY, compressed_file, converted_file);
system(cmdline.c_str());
if (!verbose) ::testing::internal::GetCapturedStdout();
return converted_file;
}
};
//-------------------------------------------------------------------------------------------------
// ZSTD compressed files
//-------------------------------------------------------------------------------------------------
TEST_F(DumpAtomZSTDTest, compressed_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_zstd_text_run0.melt";
auto compressed_file = "dump_zstd_compressed_run0.melt.zst";
generate_text_and_compressed_dump(text_file, compressed_file, "atom/zstd", "", 0);
// make sure file is closed
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_THAT(converted_file, Eq("dump_zstd_compressed_run0.melt"));
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomZSTDTest, compressed_with_units_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_zstd_text_with_units_run0.melt";
auto compressed_file = "dump_zstd_compressed_with_units_run0.melt.zst";
generate_text_and_compressed_dump(text_file, compressed_file, "atom/zstd", "scale no units yes",
0);
// make sure file is closed
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomZSTDTest, compressed_with_time_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_zstd_text_with_time_run0.melt";
auto compressed_file = "dump_zstd_compressed_with_time_run0.melt.zst";
generate_text_and_compressed_dump(text_file, compressed_file, "atom/zstd", "scale no time yes",
0);
// make sure file is closed
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomZSTDTest, compressed_triclinic_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_zstd_text_tri_run0.melt";
auto compressed_file = "dump_zstd_compressed_tri_run0.melt.zst";
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/zstd", "", 0);
// make sure file is closed
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomZSTDTest, compressed_triclinic_with_units_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_zstd_text_tri_with_units_run0.melt";
auto compressed_file = "dump_zstd_compressed_tri_with_units_run0.melt.zst";
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/zstd", "scale no units yes",
0);
// make sure file is closed
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomZSTDTest, compressed_triclinic_with_time_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_zstd_text_tri_with_time_run0.melt";
auto compressed_file = "dump_zstd_compressed_tri_with_time_run0.melt.zst";
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/zstd", "scale no time yes",
0);
// make sure file is closed
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomZSTDTest, compressed_triclinic_with_image_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_zstd_text_tri_with_image_run0.melt";
auto compressed_file = "dump_zstd_compressed_tri_with_image_run0.melt.zst";
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/zstd", "image yes", 0);
// make sure file is closed
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
int main(int argc, char **argv)
{
MPI_Init(&argc, &argv);
::testing::InitGoogleMock(&argc, argv);
// handle arguments passed via environment variable
if (const char *var = getenv("TEST_ARGS")) {
std::vector<std::string> env = utils::split_words(var);
for (auto arg : env) {
if (arg == "-v") {
verbose = true;
}
}
}
ZSTD_BINARY = getenv("ZSTD_BINARY");
if ((argc > 1) && (strcmp(argv[1], "-v") == 0)) verbose = true;
int rv = RUN_ALL_TESTS();
MPI_Finalize();
return rv;
}